KCC000802A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000802A_C01 KCC000802A_c01
acgataccttgatacttcataAGACACCTTACTTTCAGAGCTCCAGCACGTTGCATTTGT
GTGCGAAATGACGAAGCGTTCTCGTCGTCGCGACATTGATGACGAGATTGCGAACGAGAT
TGCAAACTTAAATTTGCAGCTTGCCGATCTTGAAGAGATTATCAAGGAGAAAGCGGCGGA
AGAGAAGGAAATTGCGCCCCAAGCGCGGAAGACGCGCCAGGAGCTTAGCAAGTTGCAGGC
CCAGCTCGCCAAAGCAGTCCTTAGTGATGAGGAGAAAGCTTTTCTCCAAGCCAAGCAGCA
GGAAGCTGAATTCCAGAGCCATGACCTGACGGCAGTGCGCACCGCGTTGGAGCAGCTCCG
CAAGAAAGAGGAGCAGCTGCGGGATGATAAGAAGGCGCTGCGAGAGCAGCTGCAGAAGCA
AGTCCAAGTCCAACCTCTGAGCGGGCTGCAGCAACAGCTCCAGACGCTGCCAAACCCGTC
GGACATGGTTAACAGCAACATCTGGTCGCTCGAAACGAACCACGGCTTCTTTCGGTGCTT
GCGGCCAACCGCGGGCGTGGGCGCCACCAGGGCTCTGCCGGTAGCGCTGTACGACGCTGT
TCTGGACAAGGCGGCGGGGCTGTTCCGTGAGGCGCTGCTGTGCAAGTGGATCCGCGAGGA
CGACAGCCGCAGCGGTAGCAGCAGCAGCGGTTGTGCTGGTGTCGGCGGCAGTAGCAGCAG
CGGCAGCAGTGGCGGTGGCTGCGGAGCTGGTGGCGTTCCCCCATCAGACGCCGACTGCTT
TGTGGCGACCAGCCTGTGCGCGGCCATGGCCAAGAGCTTCCCCAGCGAGGCCGACCGCAT
GGTGGCGTTCGTCAAGATACTCAGT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000802A_C01 KCC000802A_c01
         (865 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_236385.2| similar to KIAA1749 protein [Rattus norvegicus]       52  2e-05
gb|AAH08345.1|AAH08345 Unknown (protein for IMAGE:3531356) [Homo...    50  5e-05
gb|AAH13023.1| Unknown (protein for MGC:4620) [Homo sapiens]           50  5e-05
gb|AAM12868.1|AF494098_1 periplakin [Canis familiaris]                 50  5e-05
ref|NP_571600.1| spectrin, beta, erythrocytic; beta-spectrin [Da...    50  6e-05

>ref|XP_236385.2| similar to KIAA1749 protein [Rattus norvegicus]
          Length = 1294

 Score = 51.6 bits (122), Expect = 2e-05
 Identities = 45/161 (27%), Positives = 78/161 (47%), Gaps = 9/161 (5%)
 Frame = +2

Query: 29   LLSELQHVAFVCEMTKRSRRRDIDDEIANE-------IANLNLQLADLEEIIKEKAAE-E 184
            LL +LQ      E+ ++ + R + +E+ +E       I  L  ++AD+ E  +  + E +
Sbjct: 875  LLEKLQE-----EVEQKEQLRKLKNEMESERWHLDKTIEKLQKEMADIAEASRTSSLELQ 929

Query: 185  KEIAPQARKTRQELSKLQAQLAKAVLSDEEKAFLQAKQQEAEFQSHDLTAVRTALEQLRK 364
            K++     K R+EL+++Q QL +  L  E+     +K Q+                +LR 
Sbjct: 930  KQLDEYKEKNRRELAEMQTQLKEKSLEVEKARLAASKMQD----------------ELRL 973

Query: 365  KEEQLRDDKKALREQLQK-QVQVQPLSGLQQQLQTLPNPSD 484
            KEE+LRD ++A  E L K Q+  Q L  L+ QL+   +  D
Sbjct: 974  KEEELRDYQRAEEEALTKRQLLEQSLKDLEYQLEAKSHLKD 1014

 Score = 41.6 bits (96), Expect = 0.017
 Identities = 33/142 (23%), Positives = 67/142 (46%)
 Frame = +2

Query: 89   RDIDDEIANEIANLNLQLADLEEIIKEKAAEEKEIAPQARKTRQELSKLQAQLAKAVLSD 268
            ++ ++++   I  L  + A L+  +++   +E +     RK   E+ +L+  L  A   +
Sbjct: 785  KEENEKLQGRIVELERRAAQLQRQMEDVKGDEAQAKETLRKCESEVQQLEEALVCARNEE 844

Query: 269  EEKAFLQAKQQEAEFQSHDLTAVRTALEQLRKKEEQLRDDKKALREQLQKQVQVQPLSGL 448
            +E A  +             TAV   LEQ +++  Q+  ++K L E+LQ++V+       
Sbjct: 845  KEAACAR-------------TAVERELEQAQRELSQISQEQKELLEKLQEEVE------Q 885

Query: 449  QQQLQTLPNPSDMVNSNIWSLE 514
            ++QL+ L N    + S  W L+
Sbjct: 886  KEQLRKLKNE---MESERWHLD 904

>gb|AAH08345.1|AAH08345 Unknown (protein for IMAGE:3531356) [Homo sapiens]
          Length = 963

 Score = 50.1 bits (118), Expect = 5e-05
 Identities = 35/128 (27%), Positives = 70/128 (54%), Gaps = 11/128 (8%)
 Frame = +2

Query: 68  MTKRSRRRDIDDEIANEIANLNLQLADLEEIIKEKAAEEKEIAPQARKTRQELSKLQAQL 247
           + +R R ++   ++  ++  L+ +LAD ++  K +  + K +  Q  +++QE  +LQAQL
Sbjct: 364 LEERQRFQEERQKLTAQVEELSKKLADSDQASKVQQQKLKAVQAQGGESQQEAQRLQAQL 423

Query: 248 --AKAVLSDEEKAFLQAKQQEAEFQSH---------DLTAVRTALEQLRKKEEQLRDDKK 394
              +A LS +E+A    K Q  + ++H         +L     +LEQL+K+ ++LR + +
Sbjct: 424 NELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQELQEQLRSLEQLQKENKELRAEAE 483

Query: 395 ALREQLQK 418
            L  +LQ+
Sbjct: 484 RLGHELQQ 491

>gb|AAH13023.1| Unknown (protein for MGC:4620) [Homo sapiens]
          Length = 1193

 Score = 50.1 bits (118), Expect = 5e-05
 Identities = 35/128 (27%), Positives = 70/128 (54%), Gaps = 11/128 (8%)
 Frame = +2

Query: 68  MTKRSRRRDIDDEIANEIANLNLQLADLEEIIKEKAAEEKEIAPQARKTRQELSKLQAQL 247
           + +R R ++   ++  ++  L+ +LAD ++  K +  + K +  Q  +++QE  +LQAQL
Sbjct: 612 LEERQRFQEERQKLTAQVEELSKKLADSDQASKVQQQKLKAVQAQGGESQQEAQRLQAQL 671

Query: 248 --AKAVLSDEEKAFLQAKQQEAEFQSH---------DLTAVRTALEQLRKKEEQLRDDKK 394
              +A LS +E+A    K Q  + ++H         +L     +LEQL+K+ ++LR + +
Sbjct: 672 NELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQELQEQLRSLEQLQKENKELRAEAE 731

Query: 395 ALREQLQK 418
            L  +LQ+
Sbjct: 732 RLGHELQQ 739

>gb|AAM12868.1|AF494098_1 periplakin [Canis familiaris]
          Length = 681

 Score = 50.1 bits (118), Expect = 5e-05
 Identities = 40/165 (24%), Positives = 82/165 (49%), Gaps = 8/165 (4%)
 Frame = +2

Query: 44  QHVAFVCEMTKRSRRRDIDDEIANEIANLNLQLADLEEI-IKEKAAEEKEIAPQARKTRQ 220
           +H     ++ +   RR +   + +E+  L  +L +LE++ +KEK    + +  +   T Q
Sbjct: 393 EHALLKVQLEEERHRRQV---LESELETLRKKLVNLEKMEVKEKVVFSESVQVEKGDTEQ 449

Query: 221 ELSKLQAQLAKAVLS----DEEKAFLQAKQQEAEFQSHDLTAVRTALEQLRKKEEQLRDD 388
           E+ KL++ L +   S    D E + L+AK  E EF +   +     L+ LR++  +L  +
Sbjct: 450 EIQKLKSSLEEESRSKRELDAEVSRLEAKLSELEFCNSKSSK---ELDFLREENHRLDLE 506

Query: 389 KKALREQ---LQKQVQVQPLSGLQQQLQTLPNPSDMVNSNIWSLE 514
           +++L+ +   LQ ++++        +  T  +    +NS +WSLE
Sbjct: 507 RQSLQSETRRLQSEIEMAATETRDLRNVTAVDSGTNLNSRLWSLE 551

>ref|NP_571600.1| spectrin, beta, erythrocytic; beta-spectrin [Danio rerio]
            gi|9944861|gb|AAG03012.1|AF262336_1 beta-spectrin [Danio
            rerio]
          Length = 2357

 Score = 49.7 bits (117), Expect = 6e-05
 Identities = 54/204 (26%), Positives = 91/204 (44%), Gaps = 20/204 (9%)
 Frame = +2

Query: 44   QHVAFVCEMTKRSRRRDIDDEIANEIANLNLQLADLEEIIKEKAAEEKEIAPQARKTRQE 223
            +H AF+ E+      +D    I  E   L     + E I+K++ A+  E+  +   T QE
Sbjct: 1323 KHQAFMAELASN---KDWLHNIDKEGQELMESKPEFEPIVKDRLAKLHELWDKLESTTQE 1379

Query: 224  LSKL-----QAQLAKAVLSDEEKAFLQAKQQ---EAEFQSHDLTAVRTALEQLRKKEEQL 379
             ++L     +++L    L+D +K   + +QQ   + E +  DLT+    L++ +  E Q+
Sbjct: 1380 KARLLFDANRSELFDQSLADLKKWLAELQQQLQGDVEEEVKDLTSANILLKKHQITENQV 1439

Query: 380  RDDKKALREQLQKQVQV-------QP-----LSGLQQQLQTLPNPSDMVNSNIWSLETNH 523
            RD  + L E+LQ+ VQ        QP        LQ+  Q L  P       + + +  H
Sbjct: 1440 RDRAREL-EELQEAVQQHGSLREDQPELEIEQQNLQRDFQKLLTPLSQRKGKLEAAKAVH 1498

Query: 524  GFFRCLRPTAGVGATRALPVALYD 595
             FFR L     +     LP+A+ D
Sbjct: 1499 QFFRDLADEI-LWVNERLPMAMSD 1521



EST assemble image


clone accession position
1 LCL023g11_r AV627254 1 270
2 HCL004e12_r AV639762 22 429
3 LCL016c01_r AV626831 23 512
4 CL67f01_r AV396685 60 591
5 HCL043a03_r AV641952 306 865
6 LCL003f07_r AV626176 448 767




Chlamydomonas reinhardtii
Kazusa DNA Research Institute