KCC000801A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000801A_C01 KCC000801A_c01
CCTTAGTTGGACTATACTGACCTACCACGTGCTTTACCTGTTGCTCCTGAGCCGCGTACT
GAGCTGTCCCGGCCAAATGGCCCAGGCCGGGTAAATTAGCGCCCCTTACCGCGCCCTTTA
GGAGCTCCACTTCGCATGCTGCGCCCTCCAGGAGCATAGCGGCGGTGGGGCGTAGGAGCT
AGGCAGGTGCACGCTGTGAGCGAGCAGCCCAGCAAATATGTTGAAGAGCATGAAGCAGAA
GTTCAGCGGAAAGAAGGACGCCAGCAAGAACAAGGACGACTCGCAGCCCTCGACCAGCGC
TAAGGCGGGAGCTCCCGCTGCAAGCAGCAAGGCTCCTGCCCCACGGCCAATCTCAGCCAT
CCGGGAGAAGCCGCCGCTCCCAGCCATCAACGAGCAGACTCTGCAGCAGTACTACGCGGA
GCCCCTGCCCAGCTTCCGGGATGTCTCGCCAGCGGAGAAGCAGTATCTCTTCGTGCAGAA
GCTGCACCTGTGCAGCTTCGGGTTCGACTTCGCGGACCCCACGAAGCACGTCCGCGAGAA
GGAAATCAAGCGGCAGACGCTATTAGAGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000801A_C01 KCC000801A_c01
         (570 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_172803.1| B regulatory subunit of protein phosphatase 2A ...    80  2e-14
gb|AAM61625.1| B  regulatory subunit of protein phosphatase 2A, ...    80  3e-14
pir||F71418 hypothetical protein - Arabidopsis thaliana gi|22448...    77  2e-13
ref|NP_195967.1| B' regulatory subunit of PP2A (AtB'alpha) [Arab...    76  4e-13
emb|CAC09487.1| putative protein phosphatase 2A regulatory subun...    74  2e-12

>ref|NP_172803.1| B regulatory subunit of protein phosphatase 2A -related
           [Arabidopsis thaliana]
           gi|9958073|gb|AAG09562.1|AC011810_21 Putative protein
           phosphatase 2A regulatory subunit B [Arabidopsis
           thaliana]
          Length = 492

 Score = 80.1 bits (196), Expect = 2e-14
 Identities = 52/112 (46%), Positives = 63/112 (55%), Gaps = 6/112 (5%)
 Frame = +2

Query: 251 KKDASKNKDDSQPSTSAKAGAPAASS------KAPAPRPISAIREKPPLPAINEQTLQQY 412
           KK +SKN   S  STS  +   A+ S       AP  +P +    K      N      Y
Sbjct: 11  KKSSSKNHSSSSSSTSKSSDNGASKSGNSQTQNAPPVKPSADSGFKEGNLKGNGNGFTPY 70

Query: 413 YAEPLPSFRDVSPAEKQYLFVQKLHLCSFGFDFADPTKHVREKEIKRQTLLE 568
             E LP F+DV  AEKQ LFV+KL LC   FDF+DPTK+V+EK+IKRQTLLE
Sbjct: 71  --EALPGFKDVPNAEKQNLFVRKLSLCCVVFDFSDPTKNVKEKDIKRQTLLE 120

>gb|AAM61625.1| B  regulatory subunit of protein phosphatase 2A, putative
           [Arabidopsis thaliana]
          Length = 492

 Score = 79.7 bits (195), Expect = 3e-14
 Identities = 52/112 (46%), Positives = 62/112 (54%), Gaps = 6/112 (5%)
 Frame = +2

Query: 251 KKDASKNKDDSQPSTSAKAGAPAASS------KAPAPRPISAIREKPPLPAINEQTLQQY 412
           KK +SKN   S  STS  +   A  S       AP  +P +    K      N      Y
Sbjct: 11  KKSSSKNHSSSSSSTSKSSDNGAGKSGNSQTKNAPPVKPSADSGFKEGNLKGNGNGFTPY 70

Query: 413 YAEPLPSFRDVSPAEKQYLFVQKLHLCSFGFDFADPTKHVREKEIKRQTLLE 568
             E LP F+DV  AEKQ LFV+KL LC   FDF+DPTK+V+EK+IKRQTLLE
Sbjct: 71  --EALPGFKDVPNAEKQNLFVRKLSLCCVVFDFSDPTKNVKEKDIKRQTLLE 120

>pir||F71418 hypothetical protein - Arabidopsis thaliana
           gi|2244898|emb|CAB10320.1| phosphatase like protein
           [Arabidopsis thaliana] gi|7268288|emb|CAB78583.1|
           phosphatase like protein [Arabidopsis thaliana]
          Length = 969

 Score = 76.6 bits (187), Expect = 2e-13
 Identities = 48/121 (39%), Positives = 62/121 (50%)
 Frame = +2

Query: 206 SPANMLKSMKQKFSGKKDASKNKDDSQPSTSAKAGAPAASSKAPAPRPISAIREKPPLPA 385
           SP   +  +KQ F GK     +K     S     G P++ S A      +     P   +
Sbjct: 457 SPKVSVIMIKQIF-GKLPRKPSKSSHNDSNPNGEGGPSSKSSASNSNGANGTVIAPSSTS 515

Query: 386 INEQTLQQYYAEPLPSFRDVSPAEKQYLFVQKLHLCSFGFDFADPTKHVREKEIKRQTLL 565
            N         E LPSFRDV  +EK  LF++KL +C   FDF DP+K++REKEIKRQTLL
Sbjct: 516 SNRTNQVNGVYEALPSFRDVPTSEKPNLFIKKLSMCCVVFDFNDPSKNLREKEIKRQTLL 575

Query: 566 E 568
           E
Sbjct: 576 E 576

>ref|NP_195967.1| B' regulatory subunit of PP2A (AtB'alpha) [Arabidopsis thaliana]
           gi|11291677|pir||T48372 AtB'alpha regulatory subunit of
           PP2A - Arabidopsis thaliana gi|2160690|gb|AAB58900.1| B'
           regulatory subunit of PP2A [Arabidopsis thaliana]
           gi|7378631|emb|CAB83307.1| AtB'alpha regulatory subunit
           of PP2A [Arabidopsis thaliana]
           gi|27754602|gb|AAO22747.1| unknown protein [Arabidopsis
           thaliana]
          Length = 495

 Score = 75.9 bits (185), Expect = 4e-13
 Identities = 43/97 (44%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
 Frame = +2

Query: 281 SQPSTSAKAGAPAASSKAPA-PRPISAIREKPPLPAINEQTLQQYYAEPLPSFRDVSPAE 457
           S P ++      +  S  P+ P  ++A   +PP           Y  EPLP FRDVS +E
Sbjct: 32  SGPGSNMIVNHASRGSLVPSSPNSMAAATTQPP---------PMYSVEPLPLFRDVSVSE 82

Query: 458 KQYLFVQKLHLCSFGFDFADPTKHVREKEIKRQTLLE 568
           +Q LF++KL +C F FDF D  K+ REKEIKRQTLLE
Sbjct: 83  RQSLFLRKLQICCFQFDFTDTLKNAREKEIKRQTLLE 119

>emb|CAC09487.1| putative protein phosphatase 2A regulatory subunit B [Oryza sativa
           (indica cultivar-group)]
          Length = 193

 Score = 73.6 bits (179), Expect = 2e-12
 Identities = 36/65 (55%), Positives = 50/65 (76%)
 Frame = +2

Query: 374 PLPAINEQTLQQYYAEPLPSFRDVSPAEKQYLFVQKLHLCSFGFDFADPTKHVREKEIKR 553
           P P +N  T+  +  EPLP+F+DV  +EKQ LFV+K++LC   +DFADPTK+++EKE KR
Sbjct: 60  PNPMMNG-TVVYHSNEPLPAFKDVPASEKQNLFVKKVNLCCVVYDFADPTKNLKEKETKR 118

Query: 554 QTLLE 568
           QTL+E
Sbjct: 119 QTLME 123



EST assemble image


clone accession position
1 HCL069c12_r AV643417 1 616
2 LCL051g03_r AV629082 94 559
3 LCL040d05_r AV628346 95 414
4 HCL083g03_r AV644197 97 564
5 LCL042c12_r AV628467 97 532
6 CL67e04_r AV396691 113 671
7 LCL026b12_r AV627400 129 607




Chlamydomonas reinhardtii
Kazusa DNA Research Institute