KCC000799A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000799A_C01 KCC000799A_c01
GTTGTACCCTGTAAGTTACCAACTTGATTAGACTTTTGGCGTGTTGACGGTTTGGGGACA
CAGAGTGCAGCAAACAACTTACGCAGCTGAGCCCTAGAGGCAGCCGCGCAAATGGCTCAA
GCACAAGCTACTGCTCAGCAACGCACAGAGCTGCTTGCCCGGCAACTTCTTGCTGCGGAG
CAAGCGAATGGACTTGTCATGGCCCCGACAGCGGGGCACCAGCACGCTAGCCAGGTTGAG
ATTCCAACCTTCAGCATCGCGCTGCCTGAGAAGCTGACGCCCGACGGGCCATGGAGCGTG
TACCGCTCCGCCACGTCGCCCTTCCAGCTGGTGTCCACCTACCCGCCCCCCGCCGACCAT
GTGCGCACGCTACACGACAACCTGGAGTATGCGGCCTCCAAGTTTCCGCACATGCCGTAC
CTGGGCTGGCGCAAGCGGGACGACAAGGGGCGGCTGGGCGCCTACACGTGGATGACCTAC
GCGCAGGCTAGCGACGTGCGCACGGCTCTGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000799A_C01 KCC000799A_c01
         (512 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF23219.1|AC013454_6 putative long-chain-fatty-acid--CoA lig...    91  7e-18
ref|NP_566265.1| AMP-binding protein, putative [Arabidopsis thal...    91  7e-18
gb|AAM28873.1|AF503756_1 long chain acyl-CoA synthetase 6 [Arabi...    91  7e-18
dbj|BAB40450.1| long-chain acyl-CoA synthetase [Arabidopsis thal...    91  9e-18
pir||T07944 probable long-chain-fatty-acid-CoA ligase (EC 6.2.1....    90  1e-17

>gb|AAF23219.1|AC013454_6 putative long-chain-fatty-acid--CoA ligase [Arabidopsis thaliana]
          Length = 657

 Score = 91.3 bits (225), Expect = 7e-18
 Identities = 56/133 (42%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
 Frame = +1

Query: 115 AQAQATAQQRTELLARQLLAAEQANGLVMA-PTAGHQHASQVEIPTFSIALPEKLTPDGP 291
           + + A A++R   +   L+ + +++ L+ + PTAG           +S+ LPEKL   G 
Sbjct: 6   SSSSAAARRRINAIHSHLVTSSRSSPLLRSNPTAGEFCLDN----GYSVVLPEKLNT-GS 60

Query: 292 WSVYRSATSPFQLVSTYPPPADHVRTLHDNLEYAASKFPHMPYLGWRKRDDKGRLGAYTW 471
           W+VYRSA SPF+LVS +P   D + TLHDN E+A   F    YLG R R D G +G Y W
Sbjct: 61  WNVYRSAKSPFKLVSRFPDHPD-IATLHDNFEHAVHDFRDYKYLGTRVRVD-GTVGDYKW 118

Query: 472 MTYAQASDVRTAL 510
           MTY +A   RTAL
Sbjct: 119 MTYGEAGTARTAL 131

>ref|NP_566265.1| AMP-binding protein, putative [Arabidopsis thaliana]
           gi|20453099|gb|AAM19792.1| AT3g05970/F2O10_9
           [Arabidopsis thaliana] gi|24796992|gb|AAN64508.1|
           At3g05970/F2O10_9 [Arabidopsis thaliana]
          Length = 701

 Score = 91.3 bits (225), Expect = 7e-18
 Identities = 56/133 (42%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
 Frame = +1

Query: 115 AQAQATAQQRTELLARQLLAAEQANGLVMA-PTAGHQHASQVEIPTFSIALPEKLTPDGP 291
           + + A A++R   +   L+ + +++ L+ + PTAG           +S+ LPEKL   G 
Sbjct: 6   SSSSAAARRRINAIHSHLVTSSRSSPLLRSNPTAGEFCLDN----GYSVVLPEKLNT-GS 60

Query: 292 WSVYRSATSPFQLVSTYPPPADHVRTLHDNLEYAASKFPHMPYLGWRKRDDKGRLGAYTW 471
           W+VYRSA SPF+LVS +P   D + TLHDN E+A   F    YLG R R D G +G Y W
Sbjct: 61  WNVYRSAKSPFKLVSRFPDHPD-IATLHDNFEHAVHDFRDYKYLGTRVRVD-GTVGDYKW 118

Query: 472 MTYAQASDVRTAL 510
           MTY +A   RTAL
Sbjct: 119 MTYGEAGTARTAL 131

>gb|AAM28873.1|AF503756_1 long chain acyl-CoA synthetase 6 [Arabidopsis thaliana]
          Length = 701

 Score = 91.3 bits (225), Expect = 7e-18
 Identities = 56/133 (42%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
 Frame = +1

Query: 115 AQAQATAQQRTELLARQLLAAEQANGLVMA-PTAGHQHASQVEIPTFSIALPEKLTPDGP 291
           + + A A++R   +   L+ + +++ L+ + PTAG           +S+ LPEKL   G 
Sbjct: 6   SSSSAAARRRINAIHSHLVTSSRSSPLLRSNPTAGEFCLDN----GYSVVLPEKLNT-GS 60

Query: 292 WSVYRSATSPFQLVSTYPPPADHVRTLHDNLEYAASKFPHMPYLGWRKRDDKGRLGAYTW 471
           W+VYRSA SPF+LVS +P   D + TLHDN E+A   F    YLG R R D G +G Y W
Sbjct: 61  WNVYRSAKSPFKLVSRFPDHPD-IATLHDNFEHAVHDFRDYKYLGTRVRVD-GTVGDYKW 118

Query: 472 MTYAQASDVRTAL 510
           MTY +A   RTAL
Sbjct: 119 MTYGEAGTARTAL 131

>dbj|BAB40450.1| long-chain acyl-CoA synthetase [Arabidopsis thaliana]
          Length = 701

 Score = 90.9 bits (224), Expect = 9e-18
 Identities = 56/133 (42%), Positives = 77/133 (57%), Gaps = 1/133 (0%)
 Frame = +1

Query: 115 AQAQATAQQRTELLARQLLAAEQANGLVMA-PTAGHQHASQVEIPTFSIALPEKLTPDGP 291
           + + A A++R   +   L+ + +++ L+ + PTAG           +S+ LPEKL   G 
Sbjct: 6   SSSSAAARRRINAIHSHLVTSSRSSPLLRSNPTAGEFCLDN----GYSVVLPEKLNT-GN 60

Query: 292 WSVYRSATSPFQLVSTYPPPADHVRTLHDNLEYAASKFPHMPYLGWRKRDDKGRLGAYTW 471
           W+VYRSA SPF+LVS +P   D + TLHDN E+A   F    YLG R R D G +G Y W
Sbjct: 61  WNVYRSAKSPFKLVSRFPDHPD-IATLHDNFEHAVHDFRDYKYLGTRVRVD-GTVGDYKW 118

Query: 472 MTYAQASDVRTAL 510
           MTY +A   RTAL
Sbjct: 119 MTYGEAGTARTAL 131

>pir||T07944 probable long-chain-fatty-acid-CoA ligase (EC 6.2.1.3) - rape
           gi|1617274|emb|CAA96522.1| AMP-binding protein [Brassica
           napus]
          Length = 677

 Score = 90.1 bits (222), Expect = 1e-17
 Identities = 54/130 (41%), Positives = 76/130 (57%), Gaps = 2/130 (1%)
 Frame = +1

Query: 127 ATAQQRTELLARQLLAAEQANGLVMA--PTAGHQHASQVEIPTFSIALPEKLTPDGPWSV 300
           + A++R   +   L+ + +++ L+++  PTAG  +        +S+ LPEKL+  G W V
Sbjct: 5   SAARRRINAIHSHLVTSSRSSPLLLSSNPTAGEFYLDN----GYSVVLPEKLST-GKWHV 59

Query: 301 YRSATSPFQLVSTYPPPADHVRTLHDNLEYAASKFPHMPYLGWRKRDDKGRLGAYTWMTY 480
           YRSA SPF+LVS +P   D + TLHDN E+A   F    YLG R R D G +G Y WMTY
Sbjct: 60  YRSARSPFKLVSRFPDHPD-IATLHDNFEHAVHDFRDYKYLGTRVRVD-GTVGDYKWMTY 117

Query: 481 AQASDVRTAL 510
            +    RTAL
Sbjct: 118 GEVGTARTAL 127



EST assemble image


clone accession position
1 HCL055f04_r AV642661 1 606
2 HCL070g10_r AV643504 37 615
3 LCL086b08_r AV630908 111 606
4 HCL003b02_r AV639686 114 395
5 CL67d03_r AV396699 131 577




Chlamydomonas reinhardtii
Kazusa DNA Research Institute