Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000797A_C01 KCC000797A_c01
(506 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00083711.1| COG0810: Periplasmic protein TonB, links inne... 39 0.049
ref|NP_200906.2| NTF2-containing RNA-binding protein, putative [... 37 0.11
gb|AAM62628.1| ras-GTPase-activating protein SH3-domain binding ... 37 0.11
ref|NP_851235.1| NTF2-containing RNA-binding protein, putative [... 37 0.11
pir||T16484 hypothetical protein F56D2.7 - Caenorhabditis elegans 37 0.14
>ref|ZP_00083711.1| COG0810: Periplasmic protein TonB, links inner and outer membranes
[Pseudomonas fluorescens PfO-1]
Length = 291
Score = 38.5 bits (88), Expect = 0.049
Identities = 15/48 (31%), Positives = 27/48 (56%)
Frame = +3
Query: 24 DTQLSQLQPPRPQPTGRPRPICQREARESPKARDHAPTPCNTETPVLA 167
+ +L+ PP+P+P +P+P+ + + +PKA + P P PV A
Sbjct: 140 EDELATKPPPKPKPIPKPKPVAKPVPKPAPKAVEQPPAPPQPAAPVAA 187
>ref|NP_200906.2| NTF2-containing RNA-binding protein, putative [Arabidopsis
thaliana] gi|10177321|dbj|BAB10647.1| contains
similarity to RNA-binding protein~gene_id:MSL3.12
[Arabidopsis thaliana] gi|17063173|gb|AAL32982.1|
AT5g60980/MSL3_100 [Arabidopsis thaliana]
gi|27764908|gb|AAO23575.1| At5g60980/MSL3_100
[Arabidopsis thaliana]
Length = 460
Score = 37.4 bits (85), Expect = 0.11
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +1
Query: 7 PQGTAPTHSYRSCSRRGRSPRVVPAPSVNAKRASRPRPAIMPQ----PPATP 150
PQG AP HSY S ++ +S PAP+ + R ++PRPA + Q PPA P
Sbjct: 221 PQGDAPKHSYASILKQMKSS---PAPTTHVAR-NKPRPAPVNQKLTAPPAEP 268
>gb|AAM62628.1| ras-GTPase-activating protein SH3-domain binding protein-like
[Arabidopsis thaliana]
Length = 459
Score = 37.4 bits (85), Expect = 0.11
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +1
Query: 7 PQGTAPTHSYRSCSRRGRSPRVVPAPSVNAKRASRPRPAIMPQ----PPATP 150
PQG AP HSY S ++ +S PAP+ + R ++PRPA + Q PPA P
Sbjct: 221 PQGDAPKHSYASILKQMKSS---PAPTTHVAR-NKPRPAPVNQKLTAPPAEP 268
>ref|NP_851235.1| NTF2-containing RNA-binding protein, putative [Arabidopsis
thaliana]
Length = 459
Score = 37.4 bits (85), Expect = 0.11
Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Frame = +1
Query: 7 PQGTAPTHSYRSCSRRGRSPRVVPAPSVNAKRASRPRPAIMPQ----PPATP 150
PQG AP HSY S ++ +S PAP+ + R ++PRPA + Q PPA P
Sbjct: 221 PQGDAPKHSYASILKQMKSS---PAPTTHVAR-NKPRPAPVNQKLTAPPAEP 268
>pir||T16484 hypothetical protein F56D2.7 - Caenorhabditis elegans
Length = 481
Score = 37.0 bits (84), Expect = 0.14
Identities = 25/54 (46%), Positives = 26/54 (47%), Gaps = 4/54 (7%)
Frame = +1
Query: 7 PQGTAPTHSYRSCSRRGRSPRVVPA---PSVNAKRASRPRP-AIMPQPPATPRR 156
P APT S S G SP V PA PS A PRP A+ P PP PRR
Sbjct: 272 PTEMAPTLPQISTSSNGASPSVSPASTSPSGPAPSIPPPRPPALAPPPPVAPRR 325
