KCC000794A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000794A_C01 KCC000794A_c01
cggcagtgccagcagcaatgcaggtctgCGGGCAGCGTGGGGGCCTGCGTGCAGCGCGCA
CGTGGCTGCGGTGTGTCGGACGGGTCACGGTTGGGTTGCCCTCCAGCCGTGCCGTCCGGT
CCCCTCTCGGGCTGGCAACAGCAGCAGCAATGCGATGCTCGGGTATCATGCAGTTCACCC
CGCCTTGCTATCTCGCCTGGCAGCCCTGCATCAGCGGACAATGCGCGCAGTGGCGAGCCC
GCGGCGGCTGGTGCTACCCGCTGCACCTCACGTCGACACCCAGCGGGCCAGCTAACCACA
GCAAAGCGGAAAGCAATGGGCCTGGGAGAAGAGGACGCTGGG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000794A_C01 KCC000794A_c01
         (342 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAG17263.1|AF218021_1 unknown [Homo sapiens]                        37  0.094
emb|CAD83024.1| bM257P7.1.2 (novel protein, variant 2) [Mus musc...    37  0.094
emb|CAD83023.1| bM257P7.1.1 (novel protein, variant 1 (2810031P1...    37  0.094
ref|ZP_00059228.1| COG1240: Mg-chelatase subunit ChlD [Thermobif...    36  0.16
dbj|BAB85538.1| KIAA1952 protein [Homo sapiens]                        36  0.16

>gb|AAG17263.1|AF218021_1 unknown [Homo sapiens]
          Length = 156

 Score = 36.6 bits (83), Expect = 0.094
 Identities = 23/58 (39%), Positives = 29/58 (49%), Gaps = 6/58 (10%)
 Frame = +1

Query: 175 SPRLAISPGSPASADNARSGEPAA--AGATRCTSRRHPAGQLTTAK----RKAMGLGE 330
           +P L   PG P +A N   GEP A    +TRC +   P G+LT  +    R  MG GE
Sbjct: 58  APALRSDPGQPLAACNGPPGEPRADPGVSTRCAATMIPQGKLTGGRSCGSRPRMGRGE 115

>emb|CAD83024.1| bM257P7.1.2 (novel protein, variant 2) [Mus musculus]
          Length = 358

 Score = 36.6 bits (83), Expect = 0.094
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +1

Query: 112 PSGPLSGWQQQQQCDARVSCSSPRLAISPG-SPASADNARSGEPAAAGATRCTSRRH--- 279
           P     GW+  +  D    CS P +  SP    A   + +SG+ A A   RCTS  H   
Sbjct: 223 PISTAPGWEPPEDPDTGSECSHPEVTPSPRFVAAKTQSNQSGKKAPASVVRCTSLLHRTP 282

Query: 280 PAGQLTTAKRKAMG 321
           PA Q  T +    G
Sbjct: 283 PATQTQTFRAPNSG 296

>emb|CAD83023.1| bM257P7.1.1 (novel protein, variant 1 (2810031P15Rik)) [Mus
           musculus]
          Length = 374

 Score = 36.6 bits (83), Expect = 0.094
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 4/74 (5%)
 Frame = +1

Query: 112 PSGPLSGWQQQQQCDARVSCSSPRLAISPG-SPASADNARSGEPAAAGATRCTSRRH--- 279
           P     GW+  +  D    CS P +  SP    A   + +SG+ A A   RCTS  H   
Sbjct: 223 PISTAPGWEPPEDPDTGSECSHPEVTPSPRFVAAKTQSNQSGKKAPASVVRCTSLLHRTP 282

Query: 280 PAGQLTTAKRKAMG 321
           PA Q  T +    G
Sbjct: 283 PATQTQTFRAPNSG 296

>ref|ZP_00059228.1| COG1240: Mg-chelatase subunit ChlD [Thermobifida fusca]
          Length = 740

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 35/101 (34%), Positives = 42/101 (40%), Gaps = 13/101 (12%)
 Frame = -2

Query: 302 AVVSWPAGC-RREVQRVAPAAAG----------SPLRALSADAGLPGEIARRGELHDTRA 156
           A V+  A C R +V R    AA           +P  +   D GL  EI   GE HD   
Sbjct: 354 AAVAHAAWCGRTDVTRADVRAAARLALPHRRRRTPFDSPGMDEGLLDEIL--GEDHD--- 408

Query: 155 SHCCCCCQPERGPDGTAG--GQPNRDPSDTPQPRARCTQAP 39
                   P+ GPDG+ G  G P+   SDTP P A  T  P
Sbjct: 409 --------PDPGPDGSGGPGGPPSDSGSDTPPPTAGSTPDP 441

>dbj|BAB85538.1| KIAA1952 protein [Homo sapiens]
          Length = 735

 Score = 35.8 bits (81), Expect = 0.16
 Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
 Frame = +1

Query: 88  RLGCPPAVPSGPLSG----WQQQQQCDARVSCSSPRLAISPG-SPASADNARSGEPAAAG 252
           RLG P    S  LSG    W+     D    CS P ++ SP    A     +SG+ A A 
Sbjct: 34  RLGGPSGTESVTLSGTAPGWEPPDDPDTGSECSHPEVSPSPRFVAAKTQTNQSGKKAPAS 93

Query: 253 ATRCTSRRH---PAGQLTTAKRKAMG 321
             RC +  H   PA Q  T +    G
Sbjct: 94  VVRCATLLHRTPPATQTQTFRTPNSG 119



EST assemble image


clone accession position
1 CL66d09_r AV396744 1 342
2 LCL008a09_r AV626374 29 324




Chlamydomonas reinhardtii
Kazusa DNA Research Institute