KCC000791A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000791A_C01 KCC000791A_c01
ccctggccggcggcacgctgacgcactacgaccggccgcgcatcgcgcagctgtgcgaga
aggccggcctgtatatgcgcGCGCTGCAGCACTACACCGACCTGTCGGACATCAAGCGCT
GCATCATCAACACGCACGCGATCGACCCCCAGGCGCTGGTGGAGTACTTTGGCACGCTGT
CCAGCGACTGGGCGCTGGACTGCCTGAAGGAGCTGCTGGTGAGCAACATGGCGCAGAACC
TGCAGCTGGTGGTCAACATCGCCAAGGAGTACACGGAGCAGCTGACGGCCTCCAAGGTCA
TTGAGCTGTTCGAGGCCTACAACTCGTACCACGGCCTGTACTTCTACCTGGGCGCGCGCA
TCTCGTTCACCGAGGACCCCGAGGAGCACTTCAAGTACATCGAGGCGTGCTGCCTCGCAC
CGGCAACCTGAAGGAGGTGGAGCGCGTCACCCGCGAGTCGTCGCACTACCCGCCCGACAA
GGTCAAGGCCTTCCTGATGGAGGCCAAGCTGCCGGACGCCCGCCCGCTCATCAACGTGTG
CGACCGCTTCGACATGGTGGAGGACCTGACGCAGTACCTGTTCGCCAACAACATGCTGCG
CTACATCGAGGGCTACGTGCAGAAGGTGTCGCCGGCCAAGGCGCCCGCCGTGGTGGGCGC
GCTGCTGGACTGCGAGGCGCCCGACGAGTTCATCAACAACCTCATCCTGTCGGTGCGCTC
GCTGCTGCCGGTGGACAAGCTGGTGGAGGCGGTGGAGCGCCGCAACCGCCTCAAGCTGCT
GACGCCCTTCCTGGAGCACCTCATCAGCGAGGGCAGCCAGGACCCGCACGTGCACAACGC
GCTGGGCAAGATCATCATCGACACCAACAACAACCCGGAGCACTTCCTAACCACTAACCC
CTACTACGACTCGCTCGTGGTCGGCAAGCACGCGGAGAAGCGCGACCCCAACCTGGCCGT
CATTGCCTACAAGCGCGGCACCTGCGACGACGCGCTCATCGAGTGCACGTCCAAGAACGC
GCTGTTCAAGCCGCAGGCCCGGTACATTGTGGAGCGTGCTGACCCCGCGCTGTGGGCCAA
GGTGCTGGACGAGGCCAACGAGCACCGCGCCTCGCTCATTGAGCAGGTGGTGGGCACCGC
CCTGCCCGAGAGCCGCAACCCCGAGCAGGTCAGCGTCACAGTCAAGTCGTTCATGGCCCA
GGGCCTGCAGTCGGAGCTGATCGAGCTGCTGGAGAAGATTGTGCTGCAGAACAGCGCCTT
CTCCAACAACGCCAACCTGCAGAACCTGCTCATCCTCACCGCCATCAAGTCCGACAAGAC
CCGCGTCAAGGGCTACATCTAC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000791A_C01 KCC000791A_c01
         (1342 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||T06779 clathrin heavy chain - soybean gi|1335862|gb|AAC4929...   452  e-178
ref|NP_187466.3| clathrin heavy chain -related [Arabidopsis thal...   452  e-177
gb|AAG51341.1|AC012562_2 putative clathrin heavy chain, 3' parti...   452  e-176
gb|AAG50828.1|AC074395_2 clathrin heavy chain, putative [Arabido...   452  e-175
ref|NP_187724.2| clathrin heavy chain -related [Arabidopsis thal...   448  e-175

>pir||T06779 clathrin heavy chain - soybean gi|1335862|gb|AAC49294.1| clathrin
            heavy chain
          Length = 1700

 Score =  452 bits (1163), Expect(2) = e-178
 Identities = 229/308 (74%), Positives = 255/308 (82%)
 Frame = +2

Query: 416  RTGNLKEVERVTRESSHYPPDKVKAFLMEAKLPDARPLINVCDRFDMVEDLTQYLFANNM 595
            +TG +KEVERVTRESS Y P+K K FLMEAKLPDARPLINVCDRF  V DLT YL+ NNM
Sbjct: 750  KTGQIKEVERVTRESSFYDPEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNM 809

Query: 596  LRYIEGYVQKVSPAKAPAVVGALLDCEAPDEFINNLILSVRSLLPVDKLVEAVERRNRLK 775
            LRYIEGYVQKV+P  AP VVG LLD E P++FI  LILSVRSLLPV+ LVE  E+RNRL+
Sbjct: 810  LRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLR 869

Query: 776  LLTPFLEHLISEGSQDPHVHNALGKIIIDTNNNPEHFLTTNPYYDSLVVGKHAEKRDPNL 955
            LLT FLEHL+SEGSQD HVHNALGKIIID+NNNPEHFLTTNPYYDS VVGK+ EKRDP L
Sbjct: 870  LLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSRVVGKYCEKRDPTL 929

Query: 956  AVIAYKRGTCDDALIECTSKNALFKPQARYIVERADPALWAKVLDEANEHRASLIEQVVG 1135
            AV+AY+RG CDD LI  T+KN+LFK QARY+VER D  LW KVL+  N +R  LI+QVV 
Sbjct: 930  AVVAYRRGLCDDELINVTNKNSLFKLQARYVVERMDGDLWEKVLNPDNAYRRQLIDQVVS 989

Query: 1136 TALPESRNPEQVSVTVKSFMAQGLQSELIELLEKIVLQNSAFSNNANLQNLLILTAIKSD 1315
            TALPES++PEQVS  VK+FM   L  ELIELLEKIVLQNSAFS N NLQNLLILTAIK+D
Sbjct: 990  TALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKAD 1049

Query: 1316 KTRVKGYI 1339
             +RV  YI
Sbjct: 1050 PSRVMDYI 1057

 Score =  197 bits (500), Expect(2) = e-178
 Identities = 90/135 (66%), Positives = 113/135 (83%)
 Frame = +3

Query: 3    LAGGTLTHYDRPRIAQLCEKAGLYMRALQHYTDLSDIKRCIINTHAIDPQALVEYFGTLS 182
            LA G  +HYDRPRIAQLCEKAGLY+RALQHYT+L DIKR I+NTHAI+PQ+LVE+FGTLS
Sbjct: 613  LANGMFSHYDRPRIAQLCEKAGLYVRALQHYTELPDIKRVIVNTHAIEPQSLVEFFGTLS 672

Query: 183  SDWALDCLKELLVSNMAQNLQLVVNIAKEYTEQLTASKVIELFEAYNSYHGLYFYLGARI 362
             +WAL+C+K+LL+ N+  NLQ++V +AKEY EQL     I+LFE + SY GLYF+LG+ +
Sbjct: 673  REWALECMKDLLLVNLRGNLQIIVQVAKEYCEQLGVDACIKLFEQFRSYEGLYFFLGSYL 732

Query: 363  SFTEDPEEHFKYIEA 407
            S +EDP+ HFKYIEA
Sbjct: 733  SSSEDPDIHFKYIEA 747

>ref|NP_187466.3| clathrin heavy chain -related [Arabidopsis thaliana]
          Length = 1156

 Score =  452 bits (1162), Expect(2) = e-177
 Identities = 228/308 (74%), Positives = 256/308 (83%)
 Frame = +2

Query: 416  RTGNLKEVERVTRESSHYPPDKVKAFLMEAKLPDARPLINVCDRFDMVEDLTQYLFANNM 595
            +TG +KEVERVTRES+ Y  +K K FLMEAKLPDARPLINVCDRF  V DLT YL+ NNM
Sbjct: 204  KTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFSFVPDLTHYLYTNNM 263

Query: 596  LRYIEGYVQKVSPAKAPAVVGALLDCEAPDEFINNLILSVRSLLPVDKLVEAVERRNRLK 775
            LRYIEGYVQKV+P  AP VVG LLD E P++FI  LILSVRSLLPV+ LVE  E+RNRL+
Sbjct: 264  LRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLR 323

Query: 776  LLTPFLEHLISEGSQDPHVHNALGKIIIDTNNNPEHFLTTNPYYDSLVVGKHAEKRDPNL 955
            LLT FLEHL+SEGSQD HVHNALGKIIID+NNNPEHFLTTNPYYDS VVGK+ EKRDP L
Sbjct: 324  LLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSKVVGKYCEKRDPTL 383

Query: 956  AVIAYKRGTCDDALIECTSKNALFKPQARYIVERADPALWAKVLDEANEHRASLIEQVVG 1135
            AV+AY+RG CD+ LI  T+KN+LFK QARY+VER D  LW KVLDE N++R  LI+QVV 
Sbjct: 384  AVVAYRRGQCDEELINVTNKNSLFKLQARYVVERMDGDLWDKVLDENNDYRRQLIDQVVS 443

Query: 1136 TALPESRNPEQVSVTVKSFMAQGLQSELIELLEKIVLQNSAFSNNANLQNLLILTAIKSD 1315
            TALPES++PEQVS  VK+FM   L  ELIELLEKIVLQNSAFS N NLQNLLILTAIK+D
Sbjct: 444  TALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKAD 503

Query: 1316 KTRVKGYI 1339
             +RV  YI
Sbjct: 504  PSRVMDYI 511

 Score =  194 bits (492), Expect(2) = e-177
 Identities = 88/135 (65%), Positives = 112/135 (82%)
 Frame = +3

Query: 3   LAGGTLTHYDRPRIAQLCEKAGLYMRALQHYTDLSDIKRCIINTHAIDPQALVEYFGTLS 182
           LA G  THYDRPRIAQLCEKAGLY+++L+HY++L DIKR I+NTHAI+PQALVE+FGTLS
Sbjct: 67  LANGMFTHYDRPRIAQLCEKAGLYIQSLKHYSELPDIKRVIVNTHAIEPQALVEFFGTLS 126

Query: 183 SDWALDCLKELLVSNMAQNLQLVVNIAKEYTEQLTASKVIELFEAYNSYHGLYFYLGARI 362
           S+WA++C+K+LL+ N+  NLQ++V   KEY EQL     I+LFE + SY GLYF+LG+ +
Sbjct: 127 SEWAMECMKDLLLVNLRGNLQIIVQACKEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYL 186

Query: 363 SFTEDPEEHFKYIEA 407
           S +EDPE HFKYIEA
Sbjct: 187 SMSEDPEIHFKYIEA 201

>gb|AAG51341.1|AC012562_2 putative clathrin heavy chain, 3' partial; 6334-1 [Arabidopsis
            thaliana]
          Length = 1280

 Score =  452 bits (1162), Expect(2) = e-176
 Identities = 228/308 (74%), Positives = 256/308 (83%)
 Frame = +2

Query: 416  RTGNLKEVERVTRESSHYPPDKVKAFLMEAKLPDARPLINVCDRFDMVEDLTQYLFANNM 595
            +TG +KEVERVTRES+ Y  +K K FLMEAKLPDARPLINVCDRF  V DLT YL+ NNM
Sbjct: 751  KTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFSFVPDLTHYLYTNNM 810

Query: 596  LRYIEGYVQKVSPAKAPAVVGALLDCEAPDEFINNLILSVRSLLPVDKLVEAVERRNRLK 775
            LRYIEGYVQKV+P  AP VVG LLD E P++FI  LILSVRSLLPV+ LVE  E+RNRL+
Sbjct: 811  LRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLR 870

Query: 776  LLTPFLEHLISEGSQDPHVHNALGKIIIDTNNNPEHFLTTNPYYDSLVVGKHAEKRDPNL 955
            LLT FLEHL+SEGSQD HVHNALGKIIID+NNNPEHFLTTNPYYDS VVGK+ EKRDP L
Sbjct: 871  LLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSKVVGKYCEKRDPTL 930

Query: 956  AVIAYKRGTCDDALIECTSKNALFKPQARYIVERADPALWAKVLDEANEHRASLIEQVVG 1135
            AV+AY+RG CD+ LI  T+KN+LFK QARY+VER D  LW KVLDE N++R  LI+QVV 
Sbjct: 931  AVVAYRRGQCDEELINVTNKNSLFKLQARYVVERMDGDLWDKVLDENNDYRRQLIDQVVS 990

Query: 1136 TALPESRNPEQVSVTVKSFMAQGLQSELIELLEKIVLQNSAFSNNANLQNLLILTAIKSD 1315
            TALPES++PEQVS  VK+FM   L  ELIELLEKIVLQNSAFS N NLQNLLILTAIK+D
Sbjct: 991  TALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKAD 1050

Query: 1316 KTRVKGYI 1339
             +RV  YI
Sbjct: 1051 PSRVMDYI 1058

 Score =  191 bits (486), Expect(2) = e-176
 Identities = 87/135 (64%), Positives = 112/135 (82%)
 Frame = +3

Query: 3    LAGGTLTHYDRPRIAQLCEKAGLYMRALQHYTDLSDIKRCIINTHAIDPQALVEYFGTLS 182
            LA G  THYDRPRIAQLCEKAGLY+++L+HY++L DIKR I+NTHAI+PQALVE+FGTLS
Sbjct: 614  LANGMFTHYDRPRIAQLCEKAGLYIQSLKHYSELPDIKRVIVNTHAIEPQALVEFFGTLS 673

Query: 183  SDWALDCLKELLVSNMAQNLQLVVNIAKEYTEQLTASKVIELFEAYNSYHGLYFYLGARI 362
            S+WA++C+K+LL+ N+  NLQ++V  + EY EQL     I+LFE + SY GLYF+LG+ +
Sbjct: 674  SEWAMECMKDLLLVNLRGNLQIIVQASGEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYL 733

Query: 363  SFTEDPEEHFKYIEA 407
            S +EDPE HFKYIEA
Sbjct: 734  SMSEDPEIHFKYIEA 748

>gb|AAG50828.1|AC074395_2 clathrin heavy chain, putative [Arabidopsis thaliana]
          Length = 1516

 Score =  452 bits (1162), Expect(2) = e-175
 Identities = 228/308 (74%), Positives = 256/308 (83%)
 Frame = +2

Query: 416  RTGNLKEVERVTRESSHYPPDKVKAFLMEAKLPDARPLINVCDRFDMVEDLTQYLFANNM 595
            +TG +KEVERVTRES+ Y  +K K FLMEAKLPDARPLINVCDRF  V DLT YL+ NNM
Sbjct: 564  KTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFSFVPDLTHYLYTNNM 623

Query: 596  LRYIEGYVQKVSPAKAPAVVGALLDCEAPDEFINNLILSVRSLLPVDKLVEAVERRNRLK 775
            LRYIEGYVQKV+P  AP VVG LLD E P++FI  LILSVRSLLPV+ LVE  E+RNRL+
Sbjct: 624  LRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEECEKRNRLR 683

Query: 776  LLTPFLEHLISEGSQDPHVHNALGKIIIDTNNNPEHFLTTNPYYDSLVVGKHAEKRDPNL 955
            LLT FLEHL+SEGSQD HVHNALGKIIID+NNNPEHFLTTNPYYDS VVGK+ EKRDP L
Sbjct: 684  LLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSKVVGKYCEKRDPTL 743

Query: 956  AVIAYKRGTCDDALIECTSKNALFKPQARYIVERADPALWAKVLDEANEHRASLIEQVVG 1135
            AV+AY+RG CD+ LI  T+KN+LFK QARY+VER D  LW KVLDE N++R  LI+QVV 
Sbjct: 744  AVVAYRRGQCDEELINVTNKNSLFKLQARYVVERMDGDLWDKVLDENNDYRRQLIDQVVS 803

Query: 1136 TALPESRNPEQVSVTVKSFMAQGLQSELIELLEKIVLQNSAFSNNANLQNLLILTAIKSD 1315
            TALPES++PEQVS  VK+FM   L  ELIELLEKIVLQNSAFS N NLQNLLILTAIK+D
Sbjct: 804  TALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKAD 863

Query: 1316 KTRVKGYI 1339
             +RV  YI
Sbjct: 864  PSRVMDYI 871

 Score =  189 bits (479), Expect(2) = e-175
 Identities = 88/138 (63%), Positives = 113/138 (81%), Gaps = 3/138 (2%)
 Frame = +3

Query: 3   LAGGTLTHYDRPRIAQLCEKAGLYMRALQHYTDLSDIKRCIINTHAIDPQALVEYFGTLS 182
           LA G  THYDRPRIAQLCEKAGLY+++L+HY++L DIKR I+NTHAI+PQALVE+FGTLS
Sbjct: 424 LANGMFTHYDRPRIAQLCEKAGLYIQSLKHYSELPDIKRVIVNTHAIEPQALVEFFGTLS 483

Query: 183 SDWALDCLKELLVSNMAQNLQLVVNIA---KEYTEQLTASKVIELFEAYNSYHGLYFYLG 353
           S+WA++C+K+LL+ N+  NLQ++V  +   KEY EQL     I+LFE + SY GLYF+LG
Sbjct: 484 SEWAMECMKDLLLVNLRGNLQIIVQASGACKEYCEQLGVDACIKLFEQFKSYEGLYFFLG 543

Query: 354 ARISFTEDPEEHFKYIEA 407
           + +S +EDPE HFKYIEA
Sbjct: 544 SYLSMSEDPEIHFKYIEA 561

>ref|NP_187724.2| clathrin heavy chain -related [Arabidopsis thaliana]
          Length = 1705

 Score =  448 bits (1153), Expect(2) = e-175
 Identities = 227/308 (73%), Positives = 254/308 (81%)
 Frame = +2

Query: 416  RTGNLKEVERVTRESSHYPPDKVKAFLMEAKLPDARPLINVCDRFDMVEDLTQYLFANNM 595
            +TG +KEVERVTRES+ Y  +K K FLMEAKLPDARPLINVCDRF  V DLT YL+ NNM
Sbjct: 751  KTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARPLINVCDRFGFVPDLTHYLYTNNM 810

Query: 596  LRYIEGYVQKVSPAKAPAVVGALLDCEAPDEFINNLILSVRSLLPVDKLVEAVERRNRLK 775
            LRYIEGYVQKV+P  AP VVG LLD E P++FI  LILSVRSLLPV+ LV   E+RNRL+
Sbjct: 811  LRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVAECEKRNRLR 870

Query: 776  LLTPFLEHLISEGSQDPHVHNALGKIIIDTNNNPEHFLTTNPYYDSLVVGKHAEKRDPNL 955
            LLT FLEHL+SEGSQD HVHNALGKIIID+NNNPEHFLTTNPYYDS VVGK+ EKRDP L
Sbjct: 871  LLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHFLTTNPYYDSKVVGKYCEKRDPTL 930

Query: 956  AVIAYKRGTCDDALIECTSKNALFKPQARYIVERADPALWAKVLDEANEHRASLIEQVVG 1135
            AV+AY+RG CD+ LI  T+KN+LFK QARY+VER D  LW KVL E NE+R  LI+QVV 
Sbjct: 931  AVVAYRRGQCDEELINVTNKNSLFKLQARYVVERMDGDLWEKVLTEENEYRRQLIDQVVS 990

Query: 1136 TALPESRNPEQVSVTVKSFMAQGLQSELIELLEKIVLQNSAFSNNANLQNLLILTAIKSD 1315
            TALPES++PEQVS  VK+FM   L  ELIELLEKIVLQNSAFS N NLQNLLILTAIK+D
Sbjct: 991  TALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVLQNSAFSGNFNLQNLLILTAIKAD 1050

Query: 1316 KTRVKGYI 1339
             +RV  YI
Sbjct: 1051 PSRVMDYI 1058

 Score =  192 bits (487), Expect(2) = e-175
 Identities = 86/135 (63%), Positives = 112/135 (82%)
 Frame = +3

Query: 3    LAGGTLTHYDRPRIAQLCEKAGLYMRALQHYTDLSDIKRCIINTHAIDPQALVEYFGTLS 182
            LA G  +HYDRPR+AQLCEKAGLY+++L+HY++L DIKR I+NTHAI+PQALVE+FGTLS
Sbjct: 614  LANGMFSHYDRPRVAQLCEKAGLYIQSLKHYSELPDIKRVIVNTHAIEPQALVEFFGTLS 673

Query: 183  SDWALDCLKELLVSNMAQNLQLVVNIAKEYTEQLTASKVIELFEAYNSYHGLYFYLGARI 362
            S+WA++C+K+LL+ N+  NLQ++V   KEY EQL     I+LFE + SY GLYF+LG+ +
Sbjct: 674  SEWAMECMKDLLLVNLRGNLQIIVQACKEYCEQLGVDACIKLFEQFKSYEGLYFFLGSYL 733

Query: 363  SFTEDPEEHFKYIEA 407
            S +EDPE HFKYIEA
Sbjct: 734  SMSEDPEIHFKYIEA 748



EST assemble image


clone accession position
1 MXL093d08_r BP098444 1 364
2 MXL005h09_r BP093270 172 616
3 MXL054a09_r BP096174 213 647
4 MXL034e05_r BP095017 216 513
5 MXL010a04_r BP093550 217 525
6 HCL072e09_r AV643601 232 764
7 MXL070c01_r BP097109 265 658
8 CL66a12_r AV396768 357 864
9 MXL034g02_r BP095031 501 889
10 LCL068a01_r AV629867 551 1030
11 MXL054f09_r BP096212 650 935
12 MXL039h02_r BP095316 843 1245
13 MXL003e03_r BP093109 891 1362




Chlamydomonas reinhardtii
Kazusa DNA Research Institute