Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000790A_C01 KCC000790A_c01
(634 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00006033.1| COG1172: Ribose/xylose/arabinose/galactoside ... 42 0.010
gb|AAK31375.1|AC084329_1 ppg3 [Leishmania major] 41 0.013
ref|NP_460024.1| Gifsy-2 prophage; probable tail fiber protein [... 40 0.022
ref|NP_461524.1| Gifsy-1 prophage: similar to tail fiber-like pr... 40 0.028
ref|XP_300853.1| hypothetical protein XP_300853 [Homo sapiens] 40 0.037
>ref|ZP_00006033.1| COG1172: Ribose/xylose/arabinose/galactoside ABC-type transport
systems, permease components [Rhodobacter sphaeroides]
Length = 605
Score = 41.6 bits (96), Expect = 0.010
Identities = 43/134 (32%), Positives = 47/134 (34%), Gaps = 4/134 (2%)
Frame = +2
Query: 167 SDCALGHGAADSGSQTCRHPLREV*QGCRVDADRRQRACRSHNRRARGHFRQFARSPAVA 346
S+ G G AD+G HP R + R H R RG R A PA
Sbjct: 141 SEADAGRGRADAGRARDPHPAPH-----RQGREALGRPAAGHRHRPRGELR--AEGPADG 193
Query: 347 SGWTCPHLARYRGAAPTRWQHRRARRGARAR-PARGGYGDSAPSRT*RGS---GSAGGTD 514
CP R RG A A RG RAR P G S P RG G GG
Sbjct: 194 RAHLCPRRGRGRGGAGPHQPGEGAGRGRRARHPPDAG---SVPRLRPRGGHVRGHQGGRA 250
Query: 515 GSPQAQVLLKRRQH 556
+ Q RR H
Sbjct: 251 RHRRHQPAGTRRSH 264
>gb|AAK31375.1|AC084329_1 ppg3 [Leishmania major]
Length = 1325
Score = 41.2 bits (95), Expect = 0.013
Identities = 48/164 (29%), Positives = 74/164 (44%)
Frame = -1
Query: 634 SCSSSSKTALPSTSSTFRSPRNRNASMLPTLEKHLGLRGAVCASSTARASSRATWR*VAI 455
S +SSS ++ PS SS+ + +A + A ASS++ SS ++ A
Sbjct: 676 SSASSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSS----AP 731
Query: 454 SAPCWSRPCSASGAPVLPPRRCSAPIACEVRTSPSRSNSWRSCELAKMTSRSPVVAPASA 275
SA S P S+S AP SAP + S S S+S S + S S AP+S+
Sbjct: 732 SASSSSAPSSSSSAP--SASSSSAPSSSSSAPSAS-SSSAPSSSSSSAPSASSSSAPSSS 788
Query: 274 LAAVSVHTASLLNFSERMATSLAP*IGCSMSKCAVADSAVACPA 143
+A S ++S + S A S + S S A + S+ + P+
Sbjct: 789 SSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPS 832
Score = 39.3 bits (90), Expect = 0.048
Identities = 44/166 (26%), Positives = 73/166 (43%), Gaps = 5/166 (3%)
Frame = -1
Query: 625 SSSKTALPSTSSTFRSPRNRNASMLPTLEKHLGLRGAVCASSTARASSRATWR*VAISAP 446
+ S ++ PS SS+ S + +A + A ASS++ SS ++ A SA
Sbjct: 664 TESSSSAPSASSSSASSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSS----APSAS 719
Query: 445 CWSRPCSASGAP-----VLPPRRCSAPIACEVRTSPSRSNSWRSCELAKMTSRSPVVAPA 281
S P S+S AP P SAP A ++PS S+S S + S S AP+
Sbjct: 720 SSSAPSSSSSAPSASSSSAPSSSSSAPSASS-SSAPSSSSSAPSASSSSAPSSSSSSAPS 778
Query: 280 SALAAVSVHTASLLNFSERMATSLAP*IGCSMSKCAVADSAVACPA 143
++ ++ ++S + S A S + S S + S+ + P+
Sbjct: 779 ASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPS 824
Score = 38.9 bits (89), Expect = 0.063
Identities = 39/164 (23%), Positives = 73/164 (43%)
Frame = -1
Query: 634 SCSSSSKTALPSTSSTFRSPRNRNASMLPTLEKHLGLRGAVCASSTARASSRATWR*VAI 455
S S+S ++ PS+SS+ S + +A + A +SS+A ++S ++ +
Sbjct: 684 SAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSS 743
Query: 454 SAPCWSRPCSASGAPVLPPRRCSAPIACEVRTSPSRSNSWRSCELAKMTSRSPVVAPASA 275
SAP S + S + P S+ + ++PS S+S + S S AP+S+
Sbjct: 744 SAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSS 803
Query: 274 LAAVSVHTASLLNFSERMATSLAP*IGCSMSKCAVADSAVACPA 143
++ ++S S A S + S S A + S+ + P+
Sbjct: 804 SSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPS 847
Score = 38.9 bits (89), Expect = 0.063
Identities = 47/164 (28%), Positives = 76/164 (45%)
Frame = -1
Query: 634 SCSSSSKTALPSTSSTFRSPRNRNASMLPTLEKHLGLRGAVCASSTARASSRATWR*VAI 455
S S+S ++ PS+SS+ S + +A + A ASS++ SS ++ A
Sbjct: 945 SAPSASSSSAPSSSSSAPSASSSSAPSSSS--------SAPSASSSSAPSSSSS---SAP 993
Query: 454 SAPCWSRPCSASGAPVLPPRRCSAPIACEVRTSPSRSNSWRSCELAKMTSRSPVVAPASA 275
SA S P S+S AP SAP + ++PS S+S + S S AP+S+
Sbjct: 994 SASSSSAPSSSSSAP--SASSSSAPSSSS--SAPSASSSSAPSSSSSAPSASSSSAPSSS 1049
Query: 274 LAAVSVHTASLLNFSERMATSLAP*IGCSMSKCAVADSAVACPA 143
+A S ++S + S A S + S S A + S+ + P+
Sbjct: 1050 SSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPS 1093
Score = 38.5 bits (88), Expect = 0.082
Identities = 41/164 (25%), Positives = 75/164 (45%)
Frame = -1
Query: 634 SCSSSSKTALPSTSSTFRSPRNRNASMLPTLEKHLGLRGAVCASSTARASSRATWR*VAI 455
S SSS ++ PS SS+ S + ++S P+ A +SS+A ++S ++ +
Sbjct: 921 SAPSSSSSSAPSASSS--SAPSSSSSSAPSASSS----SAPSSSSSAPSASSSSAPSSSS 974
Query: 454 SAPCWSRPCSASGAPVLPPRRCSAPIACEVRTSPSRSNSWRSCELAKMTSRSPVVAPASA 275
SAP S + S + P S+ ++PS S+S + S S AP+S+
Sbjct: 975 SAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSS 1034
Query: 274 LAAVSVHTASLLNFSERMATSLAP*IGCSMSKCAVADSAVACPA 143
+A S ++S + S ++ + S S A + S+ + P+
Sbjct: 1035 SSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPS 1078
Score = 38.1 bits (87), Expect = 0.11
Identities = 43/165 (26%), Positives = 71/165 (42%), Gaps = 1/165 (0%)
Frame = -1
Query: 634 SCSSSSKTALPSTSSTFRSPRNRNASMLPTLEKHLGLRGAVCASSTARASSRATWR*VAI 455
S S+S ++ PS+SS+ S + +A + A +SS+A ++S +
Sbjct: 806 SAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSS------- 858
Query: 454 SAPCWSRPCSASGAPVLPPRRCSAPIACEVRTSPSRSNSWRSCELAKMTSRSPVVAP-AS 278
SAP S ++ + P SAP A S S+S S + S S AP AS
Sbjct: 859 SAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSAS 918
Query: 277 ALAAVSVHTASLLNFSERMATSLAP*IGCSMSKCAVADSAVACPA 143
+ +A S ++S + S A S + S S + S+ + P+
Sbjct: 919 SSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPS 963
Score = 37.4 bits (85), Expect = 0.18
Identities = 48/174 (27%), Positives = 76/174 (43%), Gaps = 15/174 (8%)
Frame = -1
Query: 634 SCSSSSKTALPSTSSTFRSPRNRNASMLPTLEKHLGLRGAVCASSTARASSRATWR*VAI 455
S + SS ++ PS SS+ S + ++S P+ + A S + +S+ ++ A
Sbjct: 751 SSAPSSSSSAPSASSS--SAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAP 808
Query: 454 SAPCWSRPCSASGAPVL-----PPRRCSAPIA------CEVRTSPSRSNSWRSCELAKMT 308
SA S P S+S AP P SAP A ++PS S+S +
Sbjct: 809 SASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAP 868
Query: 307 SRSPVVAPASALAAVSVHTASLLNFSERMA----TSLAP*IGCSMSKCAVADSA 158
S S AP+S+ +A S ++S + S A +S AP S + A + SA
Sbjct: 869 SASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSA 922
Score = 37.0 bits (84), Expect = 0.24
Identities = 41/162 (25%), Positives = 71/162 (43%), Gaps = 1/162 (0%)
Frame = -1
Query: 634 SCSSSSKTALPSTSSTFRSPRNRNASMLPTLEKHLGLRGAVCASSTA-RASSRATWR*VA 458
S S+S ++ PS+SS+ S + +A + A +SS+A ASS + +
Sbjct: 714 SAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSS 773
Query: 457 ISAPCWSRPCSASGAPVLPPRRCSAPIACEVRTSPSRSNSWRSCELAKMTSRSPVVAPAS 278
SAP S + S + P S+ + ++PS S+S + S S AP+S
Sbjct: 774 SSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSS 833
Query: 277 ALAAVSVHTASLLNFSERMATSLAP*IGCSMSKCAVADSAVA 152
+ +A S ++S + S ++ + S S A S+ A
Sbjct: 834 SSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSA 875
Score = 37.0 bits (84), Expect = 0.24
Identities = 51/170 (30%), Positives = 76/170 (44%), Gaps = 6/170 (3%)
Frame = -1
Query: 634 SCSSSSKTALPSTSSTFRSPRNRNASMLPTLEKHLGLRGAVCASSTARASSRATWR*VAI 455
S SSS +A ++SS+ S + +A + A ASS++ SS ++ A
Sbjct: 783 SAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSS----AP 838
Query: 454 SAPCWSRPCSASGAP-----VLPPRRCSAPIACEVRTSPSRSNSWRSCELAKMTSRSPVV 290
SA S P S+S AP P SAP A ++PS S+S S + S S
Sbjct: 839 SASSSSAPSSSSSAPSASSSSAPSSSSSAPSASS-SSAPSSSSSAPSASSSSAPSSSSSS 897
Query: 289 AP-ASALAAVSVHTASLLNFSERMATSLAP*IGCSMSKCAVADSAVACPA 143
AP AS+ +A S ++S + S A S S S A + S+ + P+
Sbjct: 898 APSASSSSAPSSSSSSAPSASSSSAPS-------SSSSSAPSASSSSAPS 940
Score = 37.0 bits (84), Expect = 0.24
Identities = 44/164 (26%), Positives = 75/164 (44%)
Frame = -1
Query: 634 SCSSSSKTALPSTSSTFRSPRNRNASMLPTLEKHLGLRGAVCASSTARASSRATWR*VAI 455
S S+S ++ PS+SS+ S + +A + A ASS++ SS ++ A
Sbjct: 866 SAPSASSSSAPSSSSSAPSASSSSAPSSSS-------SSAPSASSSSAPSSSSS---SAP 915
Query: 454 SAPCWSRPCSASGAPVLPPRRCSAPIACEVRTSPSRSNSWRSCELAKMTSRSPVVAPASA 275
SA S P S+S + P S+ + ++PS S+S + S S AP+S+
Sbjct: 916 SASSSSAPSSSSSS--APSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSS 973
Query: 274 LAAVSVHTASLLNFSERMATSLAP*IGCSMSKCAVADSAVACPA 143
+A S ++S + S A S + S S A + S+ + P+
Sbjct: 974 SSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPS 1017
Score = 35.0 bits (79), Expect = 0.90
Identities = 41/165 (24%), Positives = 72/165 (42%), Gaps = 4/165 (2%)
Frame = -1
Query: 634 SCSSSSKTALPSTSSTFRSPRNRNA----SMLPTLEKHLGLRGAVCASSTARASSRATWR 467
S S+S ++ PS+SS+ S + +A S P+ + ++ +A +SS +
Sbjct: 729 SAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSS 788
Query: 466 *VAISAPCWSRPCSASGAPVLPPRRCSAPIACEVRTSPSRSNSWRSCELAKMTSRSPVVA 287
A SA S P S+S + P S+ ++PS S+S + S S A
Sbjct: 789 SSAPSASSSSAPSSSSSSA---PSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSA 845
Query: 286 PASALAAVSVHTASLLNFSERMATSLAP*IGCSMSKCAVADSAVA 152
P+S+ +A S ++S + S ++ + S S A S+ A
Sbjct: 846 PSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSA 890
Score = 34.7 bits (78), Expect = 1.2
Identities = 43/148 (29%), Positives = 65/148 (43%)
Frame = -1
Query: 634 SCSSSSKTALPSTSSTFRSPRNRNASMLPTLEKHLGLRGAVCASSTARASSRATWR*VAI 455
S SSS +A ++SS+ S + +A + A ASS++ SS ++ A
Sbjct: 968 SAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSS----AP 1023
Query: 454 SAPCWSRPCSASGAPVLPPRRCSAPIACEVRTSPSRSNSWRSCELAKMTSRSPVVAPASA 275
SA S P S+S AP SAP + S S S+S S + S S AP+S+
Sbjct: 1024 SASSSSAPSSSSSAP--SASSSSAPSSSSSAPSAS-SSSAPSSSSSSAPSASSSSAPSSS 1080
Query: 274 LAAVSVHTASLLNFSERMATSLAP*IGC 191
+A S ++S + S + GC
Sbjct: 1081 SSAPSASSSSAPSSSSSFLSGSGSDGGC 1108
Score = 33.5 bits (75), Expect = 2.6
Identities = 40/164 (24%), Positives = 70/164 (42%)
Frame = -1
Query: 634 SCSSSSKTALPSTSSTFRSPRNRNASMLPTLEKHLGLRGAVCASSTARASSRATWR*VAI 455
S + SS ++ PS SS+ S + ++S P+ + +SS ASS + +
Sbjct: 873 SSAPSSSSSAPSASSS--SAPSSSSSSAPSASSSSAPSSS--SSSAPSASSSSAPSSSSS 928
Query: 454 SAPCWSRPCSASGAPVLPPRRCSAPIACEVRTSPSRSNSWRSCELAKMTSRSPVVAPASA 275
SAP S + S + P S+ ++PS S+S + S S AP+S+
Sbjct: 929 SAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSS 988
Query: 274 LAAVSVHTASLLNFSERMATSLAP*IGCSMSKCAVADSAVACPA 143
++ ++S S A S + S S A + S+ + P+
Sbjct: 989 SSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPS 1032
Score = 33.1 bits (74), Expect = 3.4
Identities = 39/161 (24%), Positives = 72/161 (44%)
Frame = -1
Query: 634 SCSSSSKTALPSTSSTFRSPRNRNASMLPTLEKHLGLRGAVCASSTARASSRATWR*VAI 455
S SSS ++ PS SS+ S + ++S P+ A +SS++ S+ ++
Sbjct: 889 SAPSSSSSSAPSASSS--SAPSSSSSSAPSASSS----SAPSSSSSSAPSASSS------ 936
Query: 454 SAPCWSRPCSASGAPVLPPRRCSAPIACEVRTSPSRSNSWRSCELAKMTSRSPVVAPASA 275
SAP S + S + P S+ + ++PS S+S S + S S AP+++
Sbjct: 937 SAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSAS 996
Query: 274 LAAVSVHTASLLNFSERMATSLAP*IGCSMSKCAVADSAVA 152
++ ++S + S A S + + S A + S+ A
Sbjct: 997 SSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSA 1037
>ref|NP_460024.1| Gifsy-2 prophage; probable tail fiber protein [Salmonella
typhimurium LT2] gi|16419564|gb|AAL19983.1| Gifsy-2
prophage probable tail fiber protein [phage Gifsy-2]
Length = 812
Score = 40.4 bits (93), Expect = 0.022
Identities = 41/130 (31%), Positives = 59/130 (44%), Gaps = 2/130 (1%)
Frame = -1
Query: 520 GAVCASSTARASSRATWR*VAISAPCWSRPCSASGAPVLPPRRCSAPIACEVRTSPSRSN 341
GA AS+T ASS A+ A +A + SAS A R +A A +TS + ++
Sbjct: 153 GAAEASATQAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANAD 212
Query: 340 SWRSC--ELAKMTSRSPVVAPASALAAVSVHTASLLNFSERMATSLAP*IGCSMSKCAVA 167
+ R+ + A + S A SA A + TA+ SE A S A G S + A +
Sbjct: 213 ASRTAAGDSAAAAAASATAAQTSAERAGASETAA--KTSETQAASSAGDAGASATAAAAS 270
Query: 166 DSAVACPALA 137
+ A A A A
Sbjct: 271 EKAAAASAAA 280
>ref|NP_461524.1| Gifsy-1 prophage: similar to tail fiber-like protein [Salmonella
typhimurium LT2] gi|16421137|gb|AAL21483.1| Gifsy-1
prophage protein [Salmonella typhimurium LT2]
Length = 790
Score = 40.0 bits (92), Expect = 0.028
Identities = 41/130 (31%), Positives = 58/130 (44%), Gaps = 2/130 (1%)
Frame = -1
Query: 520 GAVCASSTARASSRATWR*VAISAPCWSRPCSASGAPVLPPRRCSAPIACEVRTSPSRSN 341
GA AS+T ASS A+ A +A + SAS A R +A A +TS + ++
Sbjct: 153 GAAEASATQAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANAD 212
Query: 340 SWRSC--ELAKMTSRSPVVAPASALAAVSVHTASLLNFSERMATSLAP*IGCSMSKCAVA 167
R+ + A + S A SA A + TA+ SE A S A G S + A +
Sbjct: 213 VSRTAAGDSAAAAAASATAAQTSAARAGASETAA--KTSETQAASSAGDAGASATAAAAS 270
Query: 166 DSAVACPALA 137
+ A A A A
Sbjct: 271 EKAAAASAAA 280
>ref|XP_300853.1| hypothetical protein XP_300853 [Homo sapiens]
Length = 252
Score = 39.7 bits (91), Expect = 0.037
Identities = 37/139 (26%), Positives = 66/139 (46%)
Frame = -1
Query: 628 SSSSKTALPSTSSTFRSPRNRNASMLPTLEKHLGLRGAVCASSTARASSRATWR*VAISA 449
SSSS ++ PS+S + SP + ++S P+ + +SS++ SS + + S+
Sbjct: 57 SSSSSSSSPSSSPSSSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSS 116
Query: 448 PCWSRPCSASGAPVLPPRRCSAPIACEVRTSPSRSNSWRSCELAKMTSRSPVVAPASALA 269
P S S+S P S+P + +S S S+S S + +S S +P+S+
Sbjct: 117 PSSSSSSSSSS----PSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSSPSSSSP 172
Query: 268 AVSVHTASLLNFSERMATS 212
+ S + S N S ++S
Sbjct: 173 SSSGSSPSSSNSSPSSSSS 191
Score = 36.6 bits (83), Expect = 0.31
Identities = 42/174 (24%), Positives = 81/174 (46%), Gaps = 6/174 (3%)
Frame = -1
Query: 634 SCSSSSKTALPSTSSTFRSPRNRNASMLPTLEKHLGLRGAVCASSTARASSRATWR*VAI 455
S SSS ++ PS+SS+ SP + ++S + + +S ++ +SS ++ +
Sbjct: 73 SPSSSHSSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSS 132
Query: 454 SAP------CWSRPCSASGAPVLPPRRCSAPIACEVRTSPSRSNSWRSCELAKMTSRSPV 293
S+P S P S+S +P S+ + +SPS S S S + +S S
Sbjct: 133 SSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSS- 191
Query: 292 VAPASALAAVSVHTASLLNFSERMATSLAP*IGCSMSKCAVADSAVACPALALG 131
+P+S+ ++ S ++S + S ++ S S + + + +CP+ ALG
Sbjct: 192 -SPSSSSSSPSPRSSSPSSSSSSTSSP-------SSSSPSSSSPSSSCPSAALG 237
