Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000786A_C01 KCC000786A_c01
(553 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM88387.1|AF525691_1 RNA polymerase sigma factor [Chlamydomo... 269 2e-71
dbj|BAC85130.1| FLJ00279 protein [Homo sapiens] 44 0.002
gb|AAG53717.2| circumsporozoite protein [Plasmodium vivax] 42 0.006
gb|AAG53715.2| circumsporozoite protein [Plasmodium vivax] 42 0.006
emb|CAA60698.1| HP8 peptide [Homo sapiens] 41 0.012
>gb|AAM88387.1|AF525691_1 RNA polymerase sigma factor [Chlamydomonas reinhardtii]
Length = 752
Score = 269 bits (687), Expect = 2e-71
Identities = 141/141 (100%), Positives = 141/141 (100%)
Frame = +3
Query: 129 MALPGSTMNLTTRCSTTPRSAVVARAVAAPTRPTTKSAVPELLDSRPGERNLNFMEYAQA 308
MALPGSTMNLTTRCSTTPRSAVVARAVAAPTRPTTKSAVPELLDSRPGERNLNFMEYAQA
Sbjct: 1 MALPGSTMNLTTRCSTTPRSAVVARAVAAPTRPTTKSAVPELLDSRPGERNLNFMEYAQA 60
Query: 309 TQMLDRLKGQASDLELLLDQLNALEASLDESVLAPPTVDDPKERAARQARRAAKRAERRA 488
TQMLDRLKGQASDLELLLDQLNALEASLDESVLAPPTVDDPKERAARQARRAAKRAERRA
Sbjct: 61 TQMLDRLKGQASDLELLLDQLNALEASLDESVLAPPTVDDPKERAARQARRAAKRAERRA 120
Query: 489 QATSATVAAAAGPAMSAVVSH 551
QATSATVAAAAGPAMSAVVSH
Sbjct: 121 QATSATVAAAAGPAMSAVVSH 141
>dbj|BAC85130.1| FLJ00279 protein [Homo sapiens]
Length = 563
Score = 43.5 bits (101), Expect = 0.002
Identities = 34/86 (39%), Positives = 43/86 (49%), Gaps = 4/86 (4%)
Frame = +1
Query: 283 STSWSMLRR--LRCWTGSRARPLTWNCCWTSSTRWRPASTRAFWRRPRWTTPRSGLRDKH 456
+TSW RR R WT C WT +T A RA WRR R + S R +
Sbjct: 11 TTSWRRPRRGCSRSWT---------TCWWTWTTS---ARARATWRRSRRSLT-SSWRRRR 57
Query: 457 GALPSVQ--SVGPRRHPQQSRPRLGR 528
+LPS+Q + G RR P++ RPRL R
Sbjct: 58 PSLPSMQRSATGLRRRPERRRPRLCR 83
>gb|AAG53717.2| circumsporozoite protein [Plasmodium vivax]
Length = 370
Score = 42.0 bits (97), Expect = 0.006
Identities = 45/128 (35%), Positives = 52/128 (40%), Gaps = 7/128 (5%)
Frame = +2
Query: 188 GCGCARGGCAHATHHQVCGARAAG*PARRAQSQLHGVCSGDSDAGPAQGPGL*PGIAAG- 364
G G A Q G RAAG PA + G +GD AG A G G G AAG
Sbjct: 136 GDGAAGQPAGDRADGQPAGDRAAGQPAG---DRADGQPAGDRAAGQAAGNGA-GGQAAGN 191
Query: 365 -----PA-QRAGGQPRRERSGAAHGGRPQGAGCATSTARCQACRA*GPGDIRNSRGRGWA 526
PA RAGGQP +R+ G G A + A QA G G + G G
Sbjct: 192 GAGGQPAGDRAGGQPAGDRAAGQAAGNGAGGQAAGNGAGGQAA---GNGAGGQAAGNGAG 248
Query: 527 GNVSSGLA 550
G + G A
Sbjct: 249 GQAAGGNA 256
>gb|AAG53715.2| circumsporozoite protein [Plasmodium vivax]
Length = 370
Score = 42.0 bits (97), Expect = 0.006
Identities = 45/128 (35%), Positives = 52/128 (40%), Gaps = 7/128 (5%)
Frame = +2
Query: 188 GCGCARGGCAHATHHQVCGARAAG*PARRAQSQLHGVCSGDSDAGPAQGPGL*PGIAAG- 364
G G A Q G RAAG PA + G +GD AG A G G G AAG
Sbjct: 136 GDGAAGQPAGDRADGQPAGDRAAGQPAG---DRADGQPAGDRAAGQAAGNGA-GGQAAGN 191
Query: 365 -----PA-QRAGGQPRRERSGAAHGGRPQGAGCATSTARCQACRA*GPGDIRNSRGRGWA 526
PA RAGGQP +R+ G G A + A QA G G + G G
Sbjct: 192 GAGGQPAGDRAGGQPAGDRAAGQAAGNGAGGQAAGNGAGGQAA---GNGAGGQAAGNGAG 248
Query: 527 GNVSSGLA 550
G + G A
Sbjct: 249 GQAAGGNA 256
>emb|CAA60698.1| HP8 peptide [Homo sapiens]
Length = 341
Score = 40.8 bits (94), Expect = 0.012
Identities = 41/123 (33%), Positives = 52/123 (41%), Gaps = 15/123 (12%)
Frame = +1
Query: 226 PPPSLRCQSC-WIAGQASAI-STSWSMLRRLRCWTGSRAR--PLTWN---CCWTSSTRWR 384
PPP C + ++ G+ + S S LR L R R P +W C TS R R
Sbjct: 114 PPPGYGCAAAGYLDGRLEPLYSASGPGLRPLVIKQEPRGRMKPSSWRWPACSLTSRRRRR 173
Query: 385 PASTRAFWRRPRWTTPRS-GLRDKHGALP--SVQSVGPRRHP-----QQSRPRLGRQCQQ 540
TR RRPR PR+ R + A P + V PRR P + RPR C+
Sbjct: 174 RPRTRTRTRRPRTWPPRTCSSRSRTAARPPCTCSPVTPRRRPRPCPARTPRPRSVPACRP 233
Query: 541 WSR 549
W R
Sbjct: 234 WQR 236