KCC000786A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000786A_C01 KCC000786A_c01
agttgcgtATCAGTCGTGGGCAATTGTAGAAGACGCCCTGACTGTGCGATAGGACACATT
TGCTTAGGCTTCTTCTTCAGCCGGAAATTGTGGTCGCCACCGACTTGCGCTTTCTCACAC
CAGCAAACATGGCGCTTCCAGGCTCCACAATGAACCTTACAACCCGCTGCTCTACTACAC
CGCGGTCGGCTGTGGTTGCGCGCGCGGTGGCTGCGCCCACGCGACCCACCACCAAGTCTG
CGGTGCCAGAGCTGCTGGATAGCCGGCCAGGCGAGCGCAATCTCAACTTCATGGAGTATG
CTCAGGCGACTCAGATGCTGGACCGGCTCAAGGGCCAGGCCTCTGACCTGGAATTGCTGC
TGGACCAGCTCAACGCGCTGGAGGCCAGCCTCGACGAGAGCGTTCTGGCGCCGCCCACGG
TGGACGACCCCAAGGAGCGGGCTGCGCGACAAGCACGGCGCGCTGCCAAGCGTGCAGAGC
GTAGGGCCCAGGCGACATCCGCAACAGTCGCGGCCGCGGCTGGGCCGGCAATGTCAGCAG
TGGTCTCGCATTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000786A_C01 KCC000786A_c01
         (553 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAM88387.1|AF525691_1 RNA polymerase sigma factor [Chlamydomo...   269  2e-71
dbj|BAC85130.1| FLJ00279 protein [Homo sapiens]                        44  0.002
gb|AAG53717.2| circumsporozoite protein [Plasmodium vivax]             42  0.006
gb|AAG53715.2| circumsporozoite protein [Plasmodium vivax]             42  0.006
emb|CAA60698.1| HP8 peptide [Homo sapiens]                             41  0.012

>gb|AAM88387.1|AF525691_1 RNA polymerase sigma factor [Chlamydomonas reinhardtii]
          Length = 752

 Score =  269 bits (687), Expect = 2e-71
 Identities = 141/141 (100%), Positives = 141/141 (100%)
 Frame = +3

Query: 129 MALPGSTMNLTTRCSTTPRSAVVARAVAAPTRPTTKSAVPELLDSRPGERNLNFMEYAQA 308
           MALPGSTMNLTTRCSTTPRSAVVARAVAAPTRPTTKSAVPELLDSRPGERNLNFMEYAQA
Sbjct: 1   MALPGSTMNLTTRCSTTPRSAVVARAVAAPTRPTTKSAVPELLDSRPGERNLNFMEYAQA 60

Query: 309 TQMLDRLKGQASDLELLLDQLNALEASLDESVLAPPTVDDPKERAARQARRAAKRAERRA 488
           TQMLDRLKGQASDLELLLDQLNALEASLDESVLAPPTVDDPKERAARQARRAAKRAERRA
Sbjct: 61  TQMLDRLKGQASDLELLLDQLNALEASLDESVLAPPTVDDPKERAARQARRAAKRAERRA 120

Query: 489 QATSATVAAAAGPAMSAVVSH 551
           QATSATVAAAAGPAMSAVVSH
Sbjct: 121 QATSATVAAAAGPAMSAVVSH 141

>dbj|BAC85130.1| FLJ00279 protein [Homo sapiens]
          Length = 563

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 34/86 (39%), Positives = 43/86 (49%), Gaps = 4/86 (4%)
 Frame = +1

Query: 283 STSWSMLRR--LRCWTGSRARPLTWNCCWTSSTRWRPASTRAFWRRPRWTTPRSGLRDKH 456
           +TSW   RR   R WT          C WT +T    A  RA WRR R +   S  R + 
Sbjct: 11  TTSWRRPRRGCSRSWT---------TCWWTWTTS---ARARATWRRSRRSLT-SSWRRRR 57

Query: 457 GALPSVQ--SVGPRRHPQQSRPRLGR 528
            +LPS+Q  + G RR P++ RPRL R
Sbjct: 58  PSLPSMQRSATGLRRRPERRRPRLCR 83

>gb|AAG53717.2| circumsporozoite protein [Plasmodium vivax]
          Length = 370

 Score = 42.0 bits (97), Expect = 0.006
 Identities = 45/128 (35%), Positives = 52/128 (40%), Gaps = 7/128 (5%)
 Frame = +2

Query: 188 GCGCARGGCAHATHHQVCGARAAG*PARRAQSQLHGVCSGDSDAGPAQGPGL*PGIAAG- 364
           G G A          Q  G RAAG PA     +  G  +GD  AG A G G   G AAG 
Sbjct: 136 GDGAAGQPAGDRADGQPAGDRAAGQPAG---DRADGQPAGDRAAGQAAGNGA-GGQAAGN 191

Query: 365 -----PA-QRAGGQPRRERSGAAHGGRPQGAGCATSTARCQACRA*GPGDIRNSRGRGWA 526
                PA  RAGGQP  +R+     G   G   A + A  QA    G G    + G G  
Sbjct: 192 GAGGQPAGDRAGGQPAGDRAAGQAAGNGAGGQAAGNGAGGQAA---GNGAGGQAAGNGAG 248

Query: 527 GNVSSGLA 550
           G  + G A
Sbjct: 249 GQAAGGNA 256

>gb|AAG53715.2| circumsporozoite protein [Plasmodium vivax]
          Length = 370

 Score = 42.0 bits (97), Expect = 0.006
 Identities = 45/128 (35%), Positives = 52/128 (40%), Gaps = 7/128 (5%)
 Frame = +2

Query: 188 GCGCARGGCAHATHHQVCGARAAG*PARRAQSQLHGVCSGDSDAGPAQGPGL*PGIAAG- 364
           G G A          Q  G RAAG PA     +  G  +GD  AG A G G   G AAG 
Sbjct: 136 GDGAAGQPAGDRADGQPAGDRAAGQPAG---DRADGQPAGDRAAGQAAGNGA-GGQAAGN 191

Query: 365 -----PA-QRAGGQPRRERSGAAHGGRPQGAGCATSTARCQACRA*GPGDIRNSRGRGWA 526
                PA  RAGGQP  +R+     G   G   A + A  QA    G G    + G G  
Sbjct: 192 GAGGQPAGDRAGGQPAGDRAAGQAAGNGAGGQAAGNGAGGQAA---GNGAGGQAAGNGAG 248

Query: 527 GNVSSGLA 550
           G  + G A
Sbjct: 249 GQAAGGNA 256

>emb|CAA60698.1| HP8 peptide [Homo sapiens]
          Length = 341

 Score = 40.8 bits (94), Expect = 0.012
 Identities = 41/123 (33%), Positives = 52/123 (41%), Gaps = 15/123 (12%)
 Frame = +1

Query: 226 PPPSLRCQSC-WIAGQASAI-STSWSMLRRLRCWTGSRAR--PLTWN---CCWTSSTRWR 384
           PPP   C +  ++ G+   + S S   LR L      R R  P +W    C  TS  R R
Sbjct: 114 PPPGYGCAAAGYLDGRLEPLYSASGPGLRPLVIKQEPRGRMKPSSWRWPACSLTSRRRRR 173

Query: 385 PASTRAFWRRPRWTTPRS-GLRDKHGALP--SVQSVGPRRHP-----QQSRPRLGRQCQQ 540
              TR   RRPR   PR+   R +  A P  +   V PRR P     +  RPR    C+ 
Sbjct: 174 RPRTRTRTRRPRTWPPRTCSSRSRTAARPPCTCSPVTPRRRPRPCPARTPRPRSVPACRP 233

Query: 541 WSR 549
           W R
Sbjct: 234 WQR 236



EST assemble image


clone accession position
1 HCL030h04_r AV641273 1 457
2 LCL056a05_r AV629292 9 477
3 HCL041f12_r AV641875 11 326
4 LCL031d11_r AV627748 11 303
5 LCL030a09_r AV627651 11 357
6 HCL043b09_r AV641965 11 553
7 LCL098f12_r AV631721 15 550
8 HCL033c05_r AV641417 16 385
9 HCL083a04_r AV644154 18 455
10 HCL098b08_r AV645096 21 383
11 CL65e01_r AV396555 25 510
12 HCL033f12_r AV641444 29 464
13 HCL070c02_r AV643470 30 511
14 HCL013h07_r AV640301 34 443
15 LCL050c01_r AV629004 62 303
16 LCL024g06_r AV627310 100 278




Chlamydomonas reinhardtii
Kazusa DNA Research Institute