KCC000777A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000777A_C01 KCC000777A_c01
cCGGATACATAGCATTTGCTCCTCTTCACTACGCCGTGCACTTGTGGACAAGATCAATTG
CTACCTCCAAAGACACGACCCGCGAGCCATCAAACCATGCAGTCTAGACGCTAGACCAAC
ATAACTGTCTATAGTCAAGCCTAAAATGTCAACTCGCGACAAGCGGCCAGCGCCCGGCCA
GCCACGCCGGTCATCGGGCGTGGCGCTGGGCGTCCTTGGCATTATGCTGCTGGCGTTCTT
TGCTATCGTTTTCATGCTCGGGAGGCCGAGCTACCGGCATCAGTTTGAGGAGTTCATTCA
TCACCCGTTCGACCCGCATCCCATTGGAATCGACAAGCGGCACAAGGACACGACCCTGAC
TGATATCGACATCGGCGCGGGGACAAAAGCAGTAACCTCGTCTACCACTACGGAGACGGA
AAAGAAGTCCAGCGTGGGGACAGCTGCCAACCCCTCCCCCTCGCCATCGCCATCGCCGAA
GGCGGAGGAGAAGAAGGTGGAGGAGA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000777A_C01 KCC000777A_c01
         (506 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_309405.1| ENSANGP00000014893 [Anopheles gambiae] gi|21293...    36  0.24
dbj|BAB63505.1| P0002B05.25 [Oryza sativa (japonica cultivar-gro...    36  0.31
ref|XP_205740.1| hypothetical protein XP_205740 [Mus musculus]         36  0.31
ref|ZP_00009502.1| COG0204: 1-acyl-sn-glycerol-3-phosphate acylt...    36  0.31
dbj|BAB19320.1| ORF1 [TT virus]                                        35  0.41

>ref|XP_309405.1| ENSANGP00000014893 [Anopheles gambiae] gi|21293182|gb|EAA05327.1|
           ENSANGP00000014893 [Anopheles gambiae str. PEST]
          Length = 319

 Score = 36.2 bits (82), Expect = 0.24
 Identities = 37/115 (32%), Positives = 44/115 (38%), Gaps = 4/115 (3%)
 Frame = +3

Query: 168 QRPASHAGHRAWRWASLALCCWRSLLSFSCSGGRATGISLRSSFITRSTRIPLESTSGTR 347
           QRPA     R+WR +  ALC  RS +  S SGG A      +  +    R        TR
Sbjct: 208 QRPA-----RSWRMSIRALCN-RSAMRRSGSGGPARAARRAARTVPHPVRAATRPARPTR 261

Query: 348 ----TRP*LISTSARGQKQ*PRLPLRRRKRSPAWGQLPTPPPRHRHRRRRRRRRW 500
                RP    T  R   +  R    RRKR   W    + P R  H  R   RRW
Sbjct: 262 LALRARP---RTRIRSTIRTKRRTTPRRKRKRRWSS--SRPNRKSHAHRPTGRRW 311

>dbj|BAB63505.1| P0002B05.25 [Oryza sativa (japonica cultivar-group)]
          Length = 1352

 Score = 35.8 bits (81), Expect = 0.31
 Identities = 20/45 (44%), Positives = 21/45 (46%)
 Frame = +3

Query: 363  ISTSARGQKQ*PRLPLRRRKRSPAWGQLPTPPPRHRHRRRRRRRR 497
            IS + R     PR  LRRR   P       PPP  R RR RRR R
Sbjct: 1163 ISGTPRHDDDAPRRRLRRRATPPPHANATPPPPSPRRRRHRRRAR 1207

>ref|XP_205740.1| hypothetical protein XP_205740 [Mus musculus]
          Length = 117

 Score = 35.8 bits (81), Expect = 0.31
 Identities = 15/27 (55%), Positives = 15/27 (55%)
 Frame = +3

Query: 186 AGHRAWRWASLALCCWRSLLSFSCSGG 266
           AG   W W  LALC W SL S  C GG
Sbjct: 69  AGVTVWNWMELALCLWTSLGSVPCWGG 95

>ref|ZP_00009502.1| COG0204: 1-acyl-sn-glycerol-3-phosphate acyltransferase
           [Rhodopseudomonas palustris]
          Length = 269

 Score = 35.8 bits (81), Expect = 0.31
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = +2

Query: 311 DPHPIGIDKRHKDTTLTDIDIGAGTKAVTSSTTTETEKKSSVGTAANPSPSPSPSPKAEE 490
           DP P G+D+R     L+D+   A  + V  +   + E    V +A  P   P+P P++E+
Sbjct: 208 DPLPAGLDRREFLRQLSDVVETATNRLVAEARQEQAELFGRVPSAVPPQVEPAPKPESEQ 267

>dbj|BAB19320.1| ORF1 [TT virus]
          Length = 720

 Score = 35.4 bits (80), Expect = 0.41
 Identities = 17/31 (54%), Positives = 19/31 (60%)
 Frame = +3

Query: 414 RRKRSPAWGQLPTPPPRHRHRRRRRRRRWRR 506
           RR+R P W        R R+RR RRRRRWRR
Sbjct: 9   RRRRRPVW--------RRRYRRWRRRRRWRR 31



EST assemble image


clone accession position
1 MXL050d09_r BP095979 1 388
2 CL64e12_r AV396649 2 506
3 LCL052h03_r AV629136 18 455
4 LCL017e01_r AV626889 18 275




Chlamydomonas reinhardtii
Kazusa DNA Research Institute