KCC000773A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000773A_C01 KCC000773A_c01
gctatgagtgactGGGTACTCGGTTAGTACTTGCGTTATGGGTATGTATGCTTACGTGCA
CCATTAATTGGTGAACGATACAAACCAGCCTGCTGAACATAATGCGCGGAGGTCCTGAAA
CAGAATGGTTTGAAAGCACATGGATTGCAGTGCAACGTGAGCCCGGGCAGTATCCTGCCA
TGAAGGACGTGGTTGAGCTTGCGCATGTTGCTGCAGTCCGACTGCTGTGATTTTACTTGC
ATCGACTTGATTAATGCGTGCATCCAGCCGCAAAGTCATGCCAAAGATTTACAAACTCTT
ATCTTTTAATAGCATTGCTGCATATCCCAGACTGGCTGGCTGACATTCAAAGCAGTTTGT
TCGAATCCAGTGGAGGGACTTGACTAGGGACGTGTCAGCGTTGCGGTCTTTGTCGATGGG
GGTTGTGTGGACAACGCGGGAGTTGGTGAGTTTGCGTGTGCGCTGCGCAGTTTAAGTTCC
AGCGACAGTCAATTAAGGGTGAACAGTGTTGCAAAGATATAGGGGGTATTGCCGGTTATG
CGAGCGGGAGCATGCTCCTGGTTTCAAGCTTGGCCATCACTCTTCAGTGCGGCACCACAC
TGCTGCGAGGGATGGTGCTCTGCAAATTTGGGGAGACGTACACCCGTCAGGCGCACGCCT
TGCACCTTTTGTTGGGCGCTCAAGTTTGATGCAAGATATATGCCGTACACGGGACCCGGG
AGTTGAGCCTTCACGGGGCACAACTTGTCGAGACGTGGTGCCGTGGGACCTGAAGCGGTT
TGAGCAGTTGCTCGAGGCAACAGGGGCCCTCTTTTGTCGGTGTGCACGATACTGTAGACC
TGTAGTGCTTCAAGTATTGGATTATGCTATGTACGGTGTGGCACGCGCACTTGCggcaaa
ctgaaagtctccttaccaaacgcagtagctgactgtaatggcctgaagggaaaaaaaaaa
aaaaaaaactcgag


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000773A_C01 KCC000773A_c01
         (974 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_310365.1| ENSANGP00000018888 [Anopheles gambiae] gi|30178...    37  0.51
ref|XP_307017.1| ENSANGP00000016443 [Anopheles gambiae] gi|30179...    35  2.5
ref|ZP_00006349.1| COG1215: Glycosyltransferases, probably invol...    34  4.3
ref|XP_318131.1| ENSANGP00000017542 [Anopheles gambiae] gi|30175...    33  5.6
ref|XP_317932.1| ENSANGP00000011364 [Anopheles gambiae] gi|30175...    33  5.6

>ref|XP_310365.1| ENSANGP00000018888 [Anopheles gambiae] gi|30178154|gb|EAA06080.2|
           ENSANGP00000018888 [Anopheles gambiae str. PEST]
          Length = 399

 Score = 37.0 bits (84), Expect = 0.51
 Identities = 26/78 (33%), Positives = 35/78 (44%)
 Frame = -2

Query: 931 QLLRLVRRLSVCRKCACHTVHSIIQYLKHYRSTVSCTPTKEGPCCLEQLLKPLQVPRHHV 752
           Q L+ + RL +CRKC  +  HSI Q    YR  V+     +    L Q++ P  V + H 
Sbjct: 194 QRLQTIERLKLCRKCLSN--HSIEQCKSRYRCYVNGCNKDDHHTLLHQVVVPQAVIQFHE 251

Query: 751 STSCAP*RLNSRVPCTAY 698
               A   L   VP T Y
Sbjct: 252 KNKPAKSTLFKVVPVTLY 269

>ref|XP_307017.1| ENSANGP00000016443 [Anopheles gambiae] gi|30179409|gb|EAA02816.2|
           ENSANGP00000016443 [Anopheles gambiae str. PEST]
          Length = 427

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 25/78 (32%), Positives = 35/78 (44%)
 Frame = -2

Query: 931 QLLRLVRRLSVCRKCACHTVHSIIQYLKHYRSTVSCTPTKEGPCCLEQLLKPLQVPRHHV 752
           Q L+ V RL +CRKC  +  HSI Q    YR  ++     +    L Q+  P  + + H 
Sbjct: 152 QRLQTVERLKLCRKCLSN--HSIEQCKTRYRCYINGCHKDDHHTLLHQVDVPQAIIQFHE 209

Query: 751 STSCAP*RLNSRVPCTAY 698
            +  A   L   VP T Y
Sbjct: 210 KSKPAKSTLFKVVPVTLY 227

>ref|ZP_00006349.1| COG1215: Glycosyltransferases, probably involved in cell wall
           biogenesis [Rhodobacter sphaeroides]
          Length = 788

 Score = 33.9 bits (76), Expect = 4.3
 Identities = 22/71 (30%), Positives = 33/71 (45%)
 Frame = -1

Query: 794 RATAQTASGPTAPRLDKLCPVKAQLPGPVYGIYLASNLSAQQKVQGVRLTGVRLPKFAEH 615
           RA A+      APR+    P +AQ+  P +G    +         GVRL  VRLP   + 
Sbjct: 571 RAVAEKQQRRAAPRVQMEVPAEAQI--PAFGNRSLTATVLDASTSGVRLL-VRLPGVGDP 627

Query: 614 HPSQQCGAALK 582
           HP+ + G  ++
Sbjct: 628 HPALEAGGLIQ 638

>ref|XP_318131.1| ENSANGP00000017542 [Anopheles gambiae] gi|30175098|gb|EAA13166.2|
           ENSANGP00000017542 [Anopheles gambiae str. PEST]
          Length = 427

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 25/78 (32%), Positives = 34/78 (43%)
 Frame = -2

Query: 931 QLLRLVRRLSVCRKCACHTVHSIIQYLKHYRSTVSCTPTKEGPCCLEQLLKPLQVPRHHV 752
           Q L+ V RL +CRKC  +  HSI Q    YR  ++     +    L Q+  P  + + H 
Sbjct: 152 QRLQTVERLKLCRKCLNN--HSIEQCKTRYRCYINGCHKDDHHTLLHQVDVPQAIIQFHE 209

Query: 751 STSCAP*RLNSRVPCTAY 698
               A   L   VP T Y
Sbjct: 210 KNKPAKSTLFKVVPVTLY 227

>ref|XP_317932.1| ENSANGP00000011364 [Anopheles gambiae] gi|30175206|gb|EAA12984.2|
           ENSANGP00000011364 [Anopheles gambiae str. PEST]
          Length = 427

 Score = 33.5 bits (75), Expect = 5.6
 Identities = 25/78 (32%), Positives = 34/78 (43%)
 Frame = -2

Query: 931 QLLRLVRRLSVCRKCACHTVHSIIQYLKHYRSTVSCTPTKEGPCCLEQLLKPLQVPRHHV 752
           Q L+ V RL +CRKC  +  HSI Q    YR  ++     +    L Q+  P  + + H 
Sbjct: 152 QRLQTVERLKLCRKCLNN--HSIEQCKTRYRCYINGCHKDDHHTLLHQVDVPQAIIQFHE 209

Query: 751 STSCAP*RLNSRVPCTAY 698
               A   L   VP T Y
Sbjct: 210 KNKPAKSTLFKVVPVTLY 227



EST assemble image


clone accession position
1 MXL027f01_r BP094693 1 308
2 CM096a07_r AV392733 14 518
3 CL64c04_r AV396628 386 974




Chlamydomonas reinhardtii
Kazusa DNA Research Institute