KCC000769A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000769A_C01 KCC000769A_c01
gcgcgtgatggacatGAAGATCTCCGACCAGGAGCTGGCCGCGCGCAAGGCTGCCTGGAA
GGCGCCCCCGCTGAAGGCCACCAGCGGCACCCTGTACAAGTACATCAAGAACGTGTCGTC
GGCGTCCACTGGCTGCGTCACCGACTCGTAAACAGCGCATCATCATAGATGCGAGGTTAT
CAGAAGGGACAGGCGGACCACGATTAGCATGGCAGCCTGTATGGACTGTCGCGGGCTGAA
ACGCTGAGCAGGACGTGACACGCGGCGTGGGAGGCTGCGCAGGAGGAGGAGGCACGCGTG
GCGCATCGCGCTCGGAAGCTTTGTCCGTTTGCTGCGTCTGTTCTGTAGCAGAGCACCTTT
GTTCCCCTGTGTGTATGTGTGTTGTGTGTGAAACGGCTTATAGCAGGCGAGGATTAGAAG
GCGCGTGTGAGCTGCGCTGCCGTTGCGAAGCCTCTGCCCTGCCGGAATGGCTGGTGACTT
GACGGTTATTGACTGCTGGGGTGTTGCGTGCCGTGCGCCCCTGCAACTAACTAGCAGCAG
ACTGACCCATGACCGAATAACTAGATGACCTTGAACCTCGGGAGCGATCCCTTCTCTAAA
GATTCCTCTTGCATATAGAGATCGGATTAATCTGATGTGTAAGCGTCTAGCAAATATGGT
GGACGTGGATTGTTGGATGCGTGCTGACGTGCGCTACAGGACCTATATGCGAGAGTCCTG
GATGCAGCTAGATTCAAAGGCAGCACTGCTGTAAGGTACGCATGTTGTGTTGGCCTGTTG
GCCAGGACAAGGTACTGCAGTAATGCTCAGCCCCTGGGCCCAGTTGTGTCGGTCGaatgg
tcgatgactcaaacccgaagagaggggttgcagaggggagggttacggcctggttacggg
ccgatgtgtcgccga


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000769A_C01 KCC000769A_c01
         (915 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_870314.1| dihydroxy-acid dehydratase [Pirellula sp.] gi|3...    66  7e-10
ref|ZP_00119642.1| COG0129: Dihydroxyacid dehydratase/phosphoglu...    66  9e-10
ref|NP_593729.1| putative dihydroxy-acid dehydratase precursor [...    61  2e-08
pir||T43179 probable dehydratase (EC 4.2.1.-) - fission yeast  (...    61  3e-08
ref|NP_012550.1| catalyzes third step in common pathway leading ...    57  3e-07

>ref|NP_870314.1| dihydroxy-acid dehydratase [Pirellula sp.]
           gi|32447871|emb|CAD77389.1| dihydroxy-acid dehydratase
           [Pirellula sp.]
          Length = 587

 Score = 66.2 bits (160), Expect = 7e-10
 Identities = 30/46 (65%), Positives = 36/46 (78%)
 Frame = +2

Query: 8   MDMKISDQELAARKAAWKAPPLKATSGTLYKYIKNVSSASTGCVTD 145
           +D+++   EL AR++ W APPLKAT GTLYKYIK V SAS GCVTD
Sbjct: 541 LDLEVDAAELEARRSKWTAPPLKATRGTLYKYIKCVKSASEGCVTD 586

>ref|ZP_00119642.1| COG0129: Dihydroxyacid dehydratase/phosphogluconate dehydratase
           [Cytophaga hutchinsonii]
          Length = 559

 Score = 65.9 bits (159), Expect = 9e-10
 Identities = 30/49 (61%), Positives = 40/49 (81%)
 Frame = +2

Query: 2   RVMDMKISDQELAARKAAWKAPPLKATSGTLYKYIKNVSSASTGCVTDS 148
           RV+++KIS++E+  R+AAW  P  +ATSG LYKY+K VSSAS GCVTD+
Sbjct: 511 RVLEVKISEEEVTKRRAAWVKPAPRATSGVLYKYMKLVSSASEGCVTDN 559

>ref|NP_593729.1| putative dihydroxy-acid dehydratase precursor [Schizosaccharomyces
           pombe] gi|1708464|sp|Q10318|ILV3_SCHPO Putative
           dihydroxy-acid dehydratase, mitochondrial precursor
           (DAD) (2,3-dihydroxy acid hydrolyase)
           gi|7492518|pir||T37858 probable dihydroxy-acid
           dehydratase precursor - fission yeast
           (Schizosaccharomyces pombe) gi|1213255|emb|CAA93689.1|
           SPAC17G8.06c [Schizosaccharomyces pombe]
          Length = 598

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 26/47 (55%), Positives = 36/47 (76%)
 Frame = +2

Query: 8   MDMKISDQELAARKAAWKAPPLKATSGTLYKYIKNVSSASTGCVTDS 148
           +D+ + ++E+A R++ WKAPPLK   GTL KY +NVS+AS G VTDS
Sbjct: 550 LDLMVDEKEMARRRSVWKAPPLKYQQGTLLKYARNVSTASKGAVTDS 596

>pir||T43179 probable dehydratase (EC 4.2.1.-) - fission yeast
           (Schizosaccharomyces pombe) (fragment)
           gi|1749716|dbj|BAA13915.1| similar to Saccharomyces
           cerevisiae dihydroxy-acid dehydratase precursor,
           SWISS-PROT Accession Number P39522 [Schizosaccharomyces
           pombe]
          Length = 513

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 26/47 (55%), Positives = 36/47 (76%)
 Frame = +2

Query: 8   MDMKISDQELAARKAAWKAPPLKATSGTLYKYIKNVSSASTGCVTDS 148
           +D+ + ++E+A R++ WKAPPLK   GTL KY +NVS+AS G VTDS
Sbjct: 465 LDVMVDEKEMARRRSVWKAPPLKYQQGTLLKYARNVSTASKGAVTDS 511

>ref|NP_012550.1| catalyzes third step in common pathway leading to biosynthesis of
           branched-chain amino acids; Ilv3p [Saccharomyces
           cerevisiae] gi|1170543|sp|P39522|ILV3_YEAST
           Dihydroxy-acid dehydratase, mitochondrial precursor
           (DAD) (2,3-dihydroxy acid hydrolyase)
           gi|1077091|pir||S55205 dihydroxy-acid dehydratase (EC
           4.2.1.9) - yeast  (Saccharomyces cerevisiae)
           gi|854590|emb|CAA60939.1| dihydroxyacid dehydratase
           [Saccharomyces cerevisiae] gi|1015650|emb|CAA89540.1|
           ILV3 [Saccharomyces cerevisiae]
          Length = 585

 Score = 57.4 bits (137), Expect = 3e-07
 Identities = 26/47 (55%), Positives = 35/47 (74%)
 Frame = +2

Query: 8   MDMKISDQELAARKAAWKAPPLKATSGTLYKYIKNVSSASTGCVTDS 148
           +D+ +SD+E+A RK +W APP + T GTL KY K VS+AS GCV D+
Sbjct: 539 IDLLVSDKEMAQRKQSWVAPPPRYTRGTLSKYAKLVSNASNGCVLDA 585



EST assemble image


clone accession position
1 HCL083g08_r AV644200 1 516
2 CM047c03_r AV388536 10 275
3 CL63f10_r AV396510 291 769
4 MXL007g08_r BP093392 373 915




Chlamydomonas reinhardtii
Kazusa DNA Research Institute