KCC000767A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000767A_C01 KCC000767A_c01
cagCTGCTCTAATATACATGTCGTTTTGCTTACAGCGTTTAGCGGTGCCCTAAGGCCTTT
GCACATTGGCCCGCAAGAACATCGCCAGTCTTATTTCATGGCTTTCTTTCAGCAGCCCGC
GAGGCCAATCGCGGAAGGCCAGTACACGCAGACAATCTATACGCTCATAAAGGAGCAAAA
GTTCGCGGAGGCTATTCAGCACTTGCAATATCAGCTTCAGAACGTCCCGGAGAGCCGCGC
AGCTCTATCCCTGCTAGGATATTGCTACTACTACACAGGGCAATATGACATGGCATCGCA
AATGTACGAACAGCTGGTGACTTTGTATCCCAGCAATGAGGACTACAAGCTGTACTATGC
CCAGAGTCTCTACAAGGGCGGCATGTACCCGGAGGCCAGTAAAGCAGTGGTCAAGGTGGA
GGGCCACCAAAAGGCTGTCACGACGCTGCTGGTGGCGTGCTCGTACGAGCAGGATGACCT
GACTGGCTGCCGGCGGCAGCTGGACAAGTGCGCGCCGGAGGACCCGGACACGATGGTCAA
CACCGGCTGCATCATGTTCAnggagggcaagtttga


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000767A_C01 KCC000767A_c01
         (576 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_230018.1| similar to RIKEN cDNA 4930506L13 [Rattus norveg...   127  1e-28
ref|NP_084464.2| RIKEN cDNA 4930506L13 [Mus musculus] gi|2632549...   124  9e-28
gb|AAH04773.1| RIKEN cDNA 4930506L13 [Mus musculus] gi|26337073|...   124  9e-28
ref|XP_230017.1| similar to RIKEN cDNA 4930506L13 [Rattus norveg...   123  2e-27
ref|XP_140990.1| similar to RIKEN cDNA 4930506L13 [Mus musculus]      120  1e-26

>ref|XP_230018.1| similar to RIKEN cDNA 4930506L13 [Rattus norvegicus]
          Length = 664

 Score =  127 bits (319), Expect = 1e-28
 Identities = 62/166 (37%), Positives = 98/166 (58%), Gaps = 12/166 (7%)
 Frame = +2

Query: 113 QPARPIAEGQYTQTIYTLIKEQKFAEAIQHLQYQLQNVPESRAALSLLGYCYYYTGQYDM 292
           Q +  + +G++T  +Y LI++ +++EA+Q L  +LQ  P SRA LSLL YCYY   ++++
Sbjct: 4   QSSSKVPDGEFTAVVYRLIRDSRYSEAVQLLSAELQGSPRSRAGLSLLAYCYYRLQEFEL 63

Query: 293 ASQMYEQLVTLYPSNEDYKLYYAQSLYKGGMYPEASKAVVKVEG--HQKAVTTLLVACSY 466
           A++ YEQL  ++P  E Y+LY AQ+LYK  +YPEA++    ++   +Q  V  L  A  Y
Sbjct: 64  AAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRVAFLLDNPTYQTRVLRLQAAIKY 123

Query: 467 EQDDLTGCRRQL----------DKCAPEDPDTMVNTGCIMFXEGKF 574
            + DL G R  +          D     DPD +VN GC+++ EG +
Sbjct: 124 SEGDLPGARSLVEQLLSGEAGEDSGGENDPDGLVNMGCLLYKEGHY 169

>ref|NP_084464.2| RIKEN cDNA 4930506L13 [Mus musculus] gi|26325496|dbj|BAC26502.1|
           unnamed protein product [Mus musculus]
          Length = 664

 Score =  124 bits (311), Expect = 9e-28
 Identities = 61/166 (36%), Positives = 97/166 (57%), Gaps = 12/166 (7%)
 Frame = +2

Query: 113 QPARPIAEGQYTQTIYTLIKEQKFAEAIQHLQYQLQNVPESRAALSLLGYCYYYTGQYDM 292
           Q +  + +G++T  +Y LI++ +++EA+Q L  +LQ    SRA LSLL YCYY   ++++
Sbjct: 4   QSSSKVPDGEFTAVVYRLIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFEL 63

Query: 293 ASQMYEQLVTLYPSNEDYKLYYAQSLYKGGMYPEASKAVVKVE--GHQKAVTTLLVACSY 466
           A++ YEQL  ++P  E Y+LY AQ+LYK  +YPEA++    ++   +Q  V  L  A  Y
Sbjct: 64  AAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRVTFLLDNPAYQTRVLRLQAAIKY 123

Query: 467 EQDDLTGCRRQL----------DKCAPEDPDTMVNTGCIMFXEGKF 574
            + DL G R  +          D     DPD +VN GC+++ EG +
Sbjct: 124 SEGDLPGARSLVEQLLSGEAGEDSGGENDPDGLVNMGCLLYKEGHY 169

>gb|AAH04773.1| RIKEN cDNA 4930506L13 [Mus musculus] gi|26337073|dbj|BAC32220.1|
           unnamed protein product [Mus musculus]
          Length = 664

 Score =  124 bits (311), Expect = 9e-28
 Identities = 61/166 (36%), Positives = 97/166 (57%), Gaps = 12/166 (7%)
 Frame = +2

Query: 113 QPARPIAEGQYTQTIYTLIKEQKFAEAIQHLQYQLQNVPESRAALSLLGYCYYYTGQYDM 292
           Q +  + +G++T  +Y LI++ +++EA+Q L  +LQ    SRA LSLL YCYY   ++++
Sbjct: 4   QSSSKVPDGEFTAVVYRLIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFEL 63

Query: 293 ASQMYEQLVTLYPSNEDYKLYYAQSLYKGGMYPEASKAVVKVE--GHQKAVTTLLVACSY 466
           A++ YEQL  ++P  E Y+LY AQ+LYK  +YPEA++    ++   +Q  V  L  A  Y
Sbjct: 64  AAECYEQLSQMHPELEQYRLYQAQALYKACLYPEATRVTFLLDNPAYQTRVLRLQAAIKY 123

Query: 467 EQDDLTGCRRQL----------DKCAPEDPDTMVNTGCIMFXEGKF 574
            + DL G R  +          D     DPD +VN GC+++ EG +
Sbjct: 124 SEGDLPGARSLVEQLLSGEAGEDSGGENDPDGLVNMGCLLYKEGHY 169

>ref|XP_230017.1| similar to RIKEN cDNA 4930506L13 [Rattus norvegicus]
          Length = 664

 Score =  123 bits (309), Expect = 2e-27
 Identities = 61/161 (37%), Positives = 94/161 (57%), Gaps = 12/161 (7%)
 Frame = +2

Query: 128 IAEGQYTQTIYTLIKEQKFAEAIQHLQYQLQNVPESRAALSLLGYCYYYTGQYDMASQMY 307
           I +G++T  +Y LI++ +++EA+Q L  +LQ  P SRA LSLL YCYY   ++++A++ Y
Sbjct: 9   IPDGEFTAVVYRLIRDSRYSEAVQLLSAELQRSPRSRAGLSLLAYCYYRLQEFELAAECY 68

Query: 308 EQLVTLYPSNEDYKLYYAQSLYKGGMYPEASKAVVKVE--GHQKAVTTLLVACSYEQDDL 481
           EQL  ++P  E Y+LY AQ+LYK  +YPEA++    ++       V  L  A  Y + DL
Sbjct: 69  EQLSQMHPELEQYRLYQAQALYKACLYPEATRVAFLLDNPSFYSRVLRLQAAIKYSEGDL 128

Query: 482 TGCRRQL----------DKCAPEDPDTMVNTGCIMFXEGKF 574
            G R  +          D     DPD +VN GC+++ EG +
Sbjct: 129 PGARSLVEQLLSGEAGEDSGGENDPDGLVNMGCLLYKEGHY 169

>ref|XP_140990.1| similar to RIKEN cDNA 4930506L13 [Mus musculus]
          Length = 664

 Score =  120 bits (301), Expect = 1e-26
 Identities = 60/161 (37%), Positives = 93/161 (57%), Gaps = 12/161 (7%)
 Frame = +2

Query: 128 IAEGQYTQTIYTLIKEQKFAEAIQHLQYQLQNVPESRAALSLLGYCYYYTGQYDMASQMY 307
           I +G++T  +Y LI++ +++EA+Q L  +LQ    SRA LSLL YCYY   ++++A++ Y
Sbjct: 9   IPDGEFTAVVYRLIRDSRYSEAVQLLSAELQRSSRSRAGLSLLAYCYYRLQEFELAAECY 68

Query: 308 EQLVTLYPSNEDYKLYYAQSLYKGGMYPEASKAVVKVEG--HQKAVTTLLVACSYEQDDL 481
           EQL  ++P  E Y+LY AQ+LYK  +YPEA++    ++       V  L  A  Y + DL
Sbjct: 69  EQLSQMHPELEQYRLYQAQALYKACLYPEATRVAFLLDNPTFYSRVLRLQAAIKYSEGDL 128

Query: 482 TGCRRQL----------DKCAPEDPDTMVNTGCIMFXEGKF 574
            G R  +          D     DPD +VN GC+++ EG +
Sbjct: 129 PGARSLVEQLLSGEAGEDSGGENDPDGLVNMGCLLYKEGHY 169



EST assemble image


clone accession position
1 LCL041h09_r AV628442 1 467
2 LCL044d02_r AV628600 4 308
3 MX202h01_r BP089209 4 360
4 CL63d05_r AV396546 28 576




Chlamydomonas reinhardtii
Kazusa DNA Research Institute