KCC000761A_c01
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC000761A_C01 KCC000761A_c01
tccggcagtaccTAAAATAGTTATCCACTTCTATAATTGAACCACAGCCCTTTGGACTGA
GCTCCTTGTGCATTTTGAACTCCGCCTAACGCTCTTTAGCGAGTCACCTCCCGAAAAATG
GCCGCGAACACCGAGCAGCTGACCGAGGAGCAGATCGCTGAGTTCAAGGAGGCCTTCGCC
CTCTTCGATAAGGACGGCGATGGCACGATTACCACCAAGGAGCTGGGGACGGTCATGCGC
TCGCTGGGCCAGAACCCCACCGAGGCTGAGCTGCAAGACATGATCAGCGAGGTGGACGCC
GACGGCAACGGCACCATTGATTTCCCTGAGTTCCTGATGCTCATGGCCCGCAAGATGAAG
GAGACTGACCACGAGGATGAGCTGCGGGAAGCCTTCAAGGTGTTCGATAAGGATGGCAAC
GGCTTCATCTCGGCCGCTGAGCTTCGGCACGTGATGACCAACCTGGGCGAGAAGCTGTCC
GAGGAGGAGGTCGATGAGATGATCCGGGAGGCCGACGTGGACGGTGATGGCCAGGTCAAC
TACGAGGAGTTCGTGCGCATGATGACGTCTGGCGCCACTGACGACAAGACAAGAAGGGCA
CAGTTAGCCTTCCTGTCTGAGCGACGGCTGG
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000761A_C01 KCC000761A_c01
(631 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P04352|CALM_CHLRE Calmodulin gi|71688|pir||MCKM calmodulin - ... 313 2e-84
prf||1206346A calmodulin 311 6e-84
dbj|BAB89359.1| calmodulin [Strongylocentrotus intermedius] gi|2... 275 3e-73
dbj|BAB61794.1| calmodulin [Metridium senile] gi|14588599|dbj|BA... 271 4e-72
emb|CAD79597.1| calcium-sensing GFP analog [synthetic construct] 271 7e-72
>sp|P04352|CALM_CHLRE Calmodulin gi|71688|pir||MCKM calmodulin - Chlamydomonas
reinhardtii gi|167411|gb|AAA33083.1| calmodulin
Length = 163
Score = 313 bits (801), Expect = 2e-84
Identities = 157/160 (98%), Positives = 159/160 (99%)
Frame = +1
Query: 118 MAANTEQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMISEVD 297
MAANTEQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMISEVD
Sbjct: 1 MAANTEQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMISEVD 60
Query: 298 ADGNGTIDFPEFLMLMARKMKETDHEDELREAFKVFDKDGNGFISAAELRHVMTNLGEKL 477
ADGNGTIDFPEFLMLMARKMKETDHEDELREAFKVFDKDGNGFISAAELRHVMTNLGEKL
Sbjct: 61 ADGNGTIDFPEFLMLMARKMKETDHEDELREAFKVFDKDGNGFISAAELRHVMTNLGEKL 120
Query: 478 SEEEVDEMIREADVDGDGQVNYEEFVRMMTSGATDDKTRR 597
SEEEVDEMIREADVDGDGQVNYEEFVRMMTSGATDDK ++
Sbjct: 121 SEEEVDEMIREADVDGDGQVNYEEFVRMMTSGATDDKDKK 160
>prf||1206346A calmodulin
Length = 162
Score = 311 bits (796), Expect = 6e-84
Identities = 156/159 (98%), Positives = 158/159 (99%)
Frame = +1
Query: 121 AANTEQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMISEVDA 300
AANTEQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMISEVDA
Sbjct: 1 AANTEQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMISEVDA 60
Query: 301 DGNGTIDFPEFLMLMARKMKETDHEDELREAFKVFDKDGNGFISAAELRHVMTNLGEKLS 480
DGNGTIDFPEFLMLMARKMKETDHEDELREAFKVFDKDGNGFISAAELRHVMTNLGEKLS
Sbjct: 61 DGNGTIDFPEFLMLMARKMKETDHEDELREAFKVFDKDGNGFISAAELRHVMTNLGEKLS 120
Query: 481 EEEVDEMIREADVDGDGQVNYEEFVRMMTSGATDDKTRR 597
EEEVDEMIREADVDGDGQVNYEEFVRMMTSGATDDK ++
Sbjct: 121 EEEVDEMIREADVDGDGQVNYEEFVRMMTSGATDDKDKK 159
>dbj|BAB89359.1| calmodulin [Strongylocentrotus intermedius]
gi|20152223|dbj|BAB89361.1| calmodulin
[Strongylocentrotus intermedius]
Length = 156
Score = 275 bits (704), Expect = 3e-73
Identities = 134/154 (87%), Positives = 148/154 (96%)
Frame = +1
Query: 109 SRKMAANTEQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIS 288
S+++ N +QLTEEQIAEFKEAF+LFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI+
Sbjct: 2 SQELTINADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN 61
Query: 289 EVDADGNGTIDFPEFLMLMARKMKETDHEDELREAFKVFDKDGNGFISAAELRHVMTNLG 468
EVDADGNGTIDFPEFL +MARKMK+TD E+E+REAF+VFDKDGNGFISAAELRHVMTNLG
Sbjct: 62 EVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLG 121
Query: 469 EKLSEEEVDEMIREADVDGDGQVNYEEFVRMMTS 570
EKL++EEVDEMIREAD+DGDGQVNYEEFV MMTS
Sbjct: 122 EKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTS 155
Score = 67.4 bits (163), Expect = 2e-10
Identities = 31/68 (45%), Positives = 45/68 (65%)
Frame = +1
Query: 379 ELREAFKVFDKDGNGFISAAELRHVMTNLGEKLSEEEVDEMIREADVDGDGQVNYEEFVR 558
E +EAF +FDKDG+G I+ EL VM +LG+ +E E+ +MI E D DG+G +++ EF+
Sbjct: 19 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 78
Query: 559 MMTSGATD 582
MM D
Sbjct: 79 MMARKMKD 86
Score = 66.6 bits (161), Expect = 3e-10
Identities = 30/65 (46%), Positives = 45/65 (69%)
Frame = +1
Query: 160 EFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMISEVDADGNGTIDFPEFLM 339
E +EAF +FDKDG+G I+ EL VM +LG+ T+ E+ +MI E D DG+G +++ EF+
Sbjct: 92 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVT 151
Query: 340 LMARK 354
+M K
Sbjct: 152 MMTSK 156
>dbj|BAB61794.1| calmodulin [Metridium senile] gi|14588599|dbj|BAB61796.1|
calmodulin [Metridium senile]
Length = 149
Score = 271 bits (694), Expect = 4e-72
Identities = 132/146 (90%), Positives = 144/146 (98%)
Frame = +1
Query: 133 EQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMISEVDADGNG 312
+QLTEEQIAEFKEAF+LFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI+EVDADGNG
Sbjct: 3 DQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNG 62
Query: 313 TIDFPEFLMLMARKMKETDHEDELREAFKVFDKDGNGFISAAELRHVMTNLGEKLSEEEV 492
TIDFPEFL +MARKMK+TD E+E+REAF+VFDKDGNGFISAAELRHVMTNLGEKL++EEV
Sbjct: 63 TIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEV 122
Query: 493 DEMIREADVDGDGQVNYEEFVRMMTS 570
DEMIREAD+DGDGQVNYEEFV+MMTS
Sbjct: 123 DEMIREADIDGDGQVNYEEFVKMMTS 148
Score = 67.4 bits (163), Expect = 2e-10
Identities = 31/68 (45%), Positives = 45/68 (65%)
Frame = +1
Query: 379 ELREAFKVFDKDGNGFISAAELRHVMTNLGEKLSEEEVDEMIREADVDGDGQVNYEEFVR 558
E +EAF +FDKDG+G I+ EL VM +LG+ +E E+ +MI E D DG+G +++ EF+
Sbjct: 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLT 71
Query: 559 MMTSGATD 582
MM D
Sbjct: 72 MMARKMKD 79
Score = 66.6 bits (161), Expect = 3e-10
Identities = 30/65 (46%), Positives = 45/65 (69%)
Frame = +1
Query: 160 EFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMISEVDADGNGTIDFPEFLM 339
E +EAF +FDKDG+G I+ EL VM +LG+ T+ E+ +MI E D DG+G +++ EF+
Sbjct: 85 EIREAFRVFDKDGNGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVK 144
Query: 340 LMARK 354
+M K
Sbjct: 145 MMTSK 149
>emb|CAD79597.1| calcium-sensing GFP analog [synthetic construct]
Length = 416
Score = 271 bits (692), Expect = 7e-72
Identities = 133/157 (84%), Positives = 149/157 (94%), Gaps = 1/157 (0%)
Frame = +1
Query: 103 VTSRKMAANT-EQLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQD 279
+ K+ NT +QLTEEQIAEFKEAF+LFDKDGDGTITTKELGTVMRSLGQNPTEAELQD
Sbjct: 259 ILGHKLEYNTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQD 318
Query: 280 MISEVDADGNGTIDFPEFLMLMARKMKETDHEDELREAFKVFDKDGNGFISAAELRHVMT 459
MI+EVDADGNGTIDFPEFL +MARKMK+TD E+E+REAF+VFDKDGNG+ISAAELRHVMT
Sbjct: 319 MINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMT 378
Query: 460 NLGEKLSEEEVDEMIREADVDGDGQVNYEEFVRMMTS 570
NLGEKL++EEVDEMIREAD+DGDGQVNYEEFV+MMT+
Sbjct: 379 NLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 415
Score = 70.5 bits (171), Expect = 2e-11
Identities = 41/123 (33%), Positives = 67/123 (54%), Gaps = 11/123 (8%)
Frame = +1
Query: 247 GQNPTEAELQ----DMISEVDADGNGTIDFPEFLMLMARKMKETDHED-------ELREA 393
G T AE++ +++ ++ G IDF E ++ K++ + E +EA
Sbjct: 227 GNYKTRAEVKFEGDTLVNRIELKG---IDFKEDGNILGHKLEYNTRDQLTEEQIAEFKEA 283
Query: 394 FKVFDKDGNGFISAAELRHVMTNLGEKLSEEEVDEMIREADVDGDGQVNYEEFVRMMTSG 573
F +FDKDG+G I+ EL VM +LG+ +E E+ +MI E D DG+G +++ EF+ MM
Sbjct: 284 FSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARK 343
Query: 574 ATD 582
D
Sbjct: 344 MKD 346
Score = 67.0 bits (162), Expect = 2e-10
Identities = 30/65 (46%), Positives = 45/65 (69%)
Frame = +1
Query: 160 EFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMISEVDADGNGTIDFPEFLM 339
E +EAF +FDKDG+G I+ EL VM +LG+ T+ E+ +MI E D DG+G +++ EF+
Sbjct: 352 EIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQ 411
Query: 340 LMARK 354
+M K
Sbjct: 412 MMTAK 416
EST assemble image
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|
|
clone |
accession |
position |
1 |
LC084c08_r |
AV624900 |
1 |
481 |
2 |
LC079f08_r |
AV624579 |
13 |
471 |
3 |
HC078c02_r |
AV637836 |
15 |
447 |
4 |
MX256g08_r |
BP092621 |
15 |
499 |
5 |
LC056b06_r |
AV622890 |
15 |
536 |
6 |
LC069c05_r |
AV623831 |
16 |
556 |
7 |
CM001g06_r |
AV386506 |
16 |
561 |
8 |
CM060d06_r |
AV390801 |
16 |
601 |
9 |
CM067g03_r |
AV390918 |
17 |
633 |
10 |
CL62f10_r |
AV396442 |
31 |
527 |
11 |
CM049b06_r |
AV389624 |
202 |
509 |
|
Chlamydomonas reinhardtii
Kazusa DNA Research Institute