KCC000754A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000754A_C01 KCC000754A_c01
cactgctcgaaggctccttattataattcaagttgcccaacaattgcaCTCAGTCAGCCC
GTCACACGAAGCAAAGCCTGCTGCGTTCACGCCCAGCACTCAGACACGTCTCGCTTATGA
CCGGACGCAAGTCCGCAGAGGGCGGCCGTTCTGGCCGCCCGCGTACCCACGCGAAGCGGT
CATCCAGCTTTAGGGAGGACGACCTCGACGCGCAGGGCGAGAAACGAGGACCCTGGACCC
CGGAGGAGGACAAGCAGCTGACGGACCTGGTGCTCAGCTGCGGTGCCCAGCGTTGGAGCA
CAATAGCCGAGTCCATTCCAGGCCGTTCCGGAAAGTCGTGCCGCCTCAGGTGGTGGAATC
ACCTGAGCCCGCAAGTGAAAAAGGGTCCTTTCAGCGATTTCGAGGACGCCGTCATCGTGC
GGTCGCACGAGAAGTATGGGAACAAGTGGTCCGTTATCGCCAAGCTGCTTCCAGGCCGGA
CAGACAACGCAGTCAAGAACCGCTGGAACTCCACGCTAAAACGGAAGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000754A_C01 KCC000754A_c01
         (528 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||S71284 myb-related protein, 33.3K - Arabidopsis thaliana gi...   148  5e-35
ref|NP_201531.1| myb family transcription factor [Arabidopsis th...   148  5e-35
gb|AAM64847.1| myb-related protein, 33.3K [Arabidopsis thaliana]      148  5e-35
gb|AAK96490.1| AT5g67300/K8K14_2 [Arabidopsis thaliana] gi|16974...   148  5e-35
dbj|BAC53938.1| Myb-like protein [Nicotiana tabacum]                  144  9e-34

>pir||S71284 myb-related protein, 33.3K - Arabidopsis thaliana
           gi|1263095|emb|CAA90809.1| MYB-related protein
           [Arabidopsis thaliana]
          Length = 305

 Score =  148 bits (373), Expect = 5e-35
 Identities = 67/101 (66%), Positives = 81/101 (79%)
 Frame = +3

Query: 225 RGPWTPEEDKQLTDLVLSCGAQRWSTIAESIPGRSGKSCRLRWWNHLSPQVKKGPFSDFE 404
           +GPW+PEED+QL  LV+  G + W+ I++SIPGRSGKSCRLRW N LSPQV+  PFS  E
Sbjct: 6   KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 405 DAVIVRSHEKYGNKWSVIAKLLPGRTDNAVKNRWNSTLKRK 527
           D  I R+H ++GNKW+ IA+LL GRTDNAVKN WNSTLKRK
Sbjct: 66  DETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

>ref|NP_201531.1| myb family transcription factor [Arabidopsis thaliana]
           gi|9758429|dbj|BAB09015.1| myb-related protein, 33.3K
           [Arabidopsis thaliana]
           gi|11908060|gb|AAG41459.1|AF326877_1 putative
           myb-related protein, 33.3K [Arabidopsis thaliana]
           gi|12642876|gb|AAK00380.1|AF339698_1 putative
           myb-related protein, 33.3K [Arabidopsis thaliana]
          Length = 305

 Score =  148 bits (373), Expect = 5e-35
 Identities = 67/101 (66%), Positives = 81/101 (79%)
 Frame = +3

Query: 225 RGPWTPEEDKQLTDLVLSCGAQRWSTIAESIPGRSGKSCRLRWWNHLSPQVKKGPFSDFE 404
           +GPW+PEED+QL  LV+  G + W+ I++SIPGRSGKSCRLRW N LSPQV+  PFS  E
Sbjct: 6   KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 405 DAVIVRSHEKYGNKWSVIAKLLPGRTDNAVKNRWNSTLKRK 527
           D  I R+H ++GNKW+ IA+LL GRTDNAVKN WNSTLKRK
Sbjct: 66  DETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

>gb|AAM64847.1| myb-related protein, 33.3K [Arabidopsis thaliana]
          Length = 305

 Score =  148 bits (373), Expect = 5e-35
 Identities = 67/101 (66%), Positives = 81/101 (79%)
 Frame = +3

Query: 225 RGPWTPEEDKQLTDLVLSCGAQRWSTIAESIPGRSGKSCRLRWWNHLSPQVKKGPFSDFE 404
           +GPW+PEED+QL  LV+  G + W+ I++SIPGRSGKSCRLRW N LSPQV+  PFS  E
Sbjct: 6   KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 405 DAVIVRSHEKYGNKWSVIAKLLPGRTDNAVKNRWNSTLKRK 527
           D  I R+H ++GNKW+ IA+LL GRTDNAVKN WNSTLKRK
Sbjct: 66  DETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

>gb|AAK96490.1| AT5g67300/K8K14_2 [Arabidopsis thaliana] gi|16974493|gb|AAL31250.1|
           AT5g67300/K8K14_2 [Arabidopsis thaliana]
          Length = 305

 Score =  148 bits (373), Expect = 5e-35
 Identities = 67/101 (66%), Positives = 81/101 (79%)
 Frame = +3

Query: 225 RGPWTPEEDKQLTDLVLSCGAQRWSTIAESIPGRSGKSCRLRWWNHLSPQVKKGPFSDFE 404
           +GPW+PEED+QL  LV+  G + W+ I++SIPGRSGKSCRLRW N LSPQV+  PFS  E
Sbjct: 6   KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFSAEE 65

Query: 405 DAVIVRSHEKYGNKWSVIAKLLPGRTDNAVKNRWNSTLKRK 527
           D  I R+H ++GNKW+ IA+LL GRTDNAVKN WNSTLKRK
Sbjct: 66  DETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

>dbj|BAC53938.1| Myb-like protein [Nicotiana tabacum]
          Length = 329

 Score =  144 bits (362), Expect = 9e-34
 Identities = 64/101 (63%), Positives = 79/101 (77%)
 Frame = +3

Query: 225 RGPWTPEEDKQLTDLVLSCGAQRWSTIAESIPGRSGKSCRLRWWNHLSPQVKKGPFSDFE 404
           +GPW+PEED+ L  LV   G + WS I++S+PGRSGKSCRLRW N LSPQV+   F+  E
Sbjct: 14  KGPWSPEEDELLQSLVEKHGPRNWSLISKSVPGRSGKSCRLRWCNQLSPQVEHRAFTSEE 73

Query: 405 DAVIVRSHEKYGNKWSVIAKLLPGRTDNAVKNRWNSTLKRK 527
           D  I+R+H K+GNKW+ IA+LL GRTDNA+KN WNSTLKRK
Sbjct: 74  DETIIRAHAKFGNKWATIARLLSGRTDNAIKNHWNSTLKRK 114



EST assemble image


clone accession position
1 HCL074a02_r AV643674 1 459
2 CL61b06_r AV396320 49 528




Chlamydomonas reinhardtii
Kazusa DNA Research Institute