KCC000753A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000753A_C01 KCC000753A_c01
cTAGAGGTTCACCTTACACGAGTGCATGCGGGTATAATGGAGCAGAAGTATGCCAGCTCA
GACCCACACGCTCAGATCCAAACTCGCAACAGTAACCATCGTACTCGAGCTCCTCTATTC
TGCATGCGAAGCCAGAGCTGGTGTTGCCCTGTGCGGGCCTGGTCCACTTGTGTGTTCACG
CCTCGCCTCAGCTCGCTCACCACCGATGCACGTACACCAGACATTTCTTTTGGGTTGTGT
AGACCAGCCGCTCAGCATTGTAATCTGGGGCAACCTGCCGCACGTGCGCCACAACAGTGA
CGACTCTCGTGGCTCTCAATCAAGGAAAGCTAACCTCTACGCGCCATCACATAAGCATGG
GGCCACGGGCACCCCTCGCGCCGTTGCACACTGAGCGGTAGCATACTTCGCGCAACGCAC
CACATGCAGACAAAACGTGTTCCTCGCCCCCAGCGGTGCTCTGCCTGGCGCACCCCACAG
CGCAGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000753A_C01 KCC000753A_c01
         (487 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00056488.1| hypothetical protein [Magnetospirillum magnet...    39  0.033
ref|XP_297455.1| hypothetical protein XP_297455 [Homo sapiens]         37  0.096
sp|P13055|E75C_DROME Ecdysone-induced protein 75B isoform C (E75...    34  0.82
ref|XP_301591.1| similar to Protein C20orf27 [Homo sapiens]            34  1.1
ref|XP_146245.1| similar to enigma homolog [Rattus norvegicus] [...    34  1.1

>ref|ZP_00056488.1| hypothetical protein [Magnetospirillum magnetotacticum]
          Length = 555

 Score = 38.9 bits (89), Expect = 0.033
 Identities = 31/92 (33%), Positives = 41/92 (43%), Gaps = 19/92 (20%)
 Frame = +2

Query: 152 CGPGPLVCSRLASARSPPM-------HVHQTFLLGCVDQPLSIVIWGNLPHVR-HNSDDS 307
           CGPG  +  RL   RS P+       H+H   + G    P  +V++GN PH R H  D  
Sbjct: 55  CGPGAEIGRRLQYGRSAPLELLHARSHIH---VRGTDRAPHELVLFGNQPHRRPHLVDQQ 111

Query: 308 RGSQSRK-----ANLYAPSHK------HGATG 370
           RG+  R+      +L  P H       HG TG
Sbjct: 112 RGTVPRRLSRLGLHLRHPPHPGRNPPGHGGTG 143

>ref|XP_297455.1| hypothetical protein XP_297455 [Homo sapiens]
          Length = 388

 Score = 37.4 bits (85), Expect = 0.096
 Identities = 25/58 (43%), Positives = 29/58 (49%), Gaps = 2/58 (3%)
 Frame = +3

Query: 285 CATTVTTLVALNQGKLTSTRHHISMGPRAP--LAPLHTER*HTSRNAPHADKTCSSPP 452
           C   V   +AL  GK T+    +   PRAP  LAP  T      R+AP AD TCSS P
Sbjct: 217 CTVRVLGELALFNGKTTTKGEVVPRAPRAPALLAPART-----LRHAPPADVTCSSSP 269

>sp|P13055|E75C_DROME Ecdysone-induced protein 75B isoform C (E75-C) gi|85150|pir||S05979
           steroid hormone receptor homolog - fruit fly (Drosophila
           melanogaster) gi|7517|emb|CAA33611.1| unnamed protein
           product [Drosophila melanogaster]
          Length = 1443

 Score = 34.3 bits (77), Expect = 0.82
 Identities = 20/67 (29%), Positives = 26/67 (37%), Gaps = 5/67 (7%)
 Frame = -2

Query: 309 RESSLLWRTCGRLPQITMLS-----GWSTQPKRNVWCTCIGGERAEARREHTSGPGPHRA 145
           RE + +WR C R P+I   S      W T    +  C C   E  E  +E  S     R 
Sbjct: 533 REKARIWRPCNRAPRIAASSDPSPPSWMTSHASSPPCCCAHLETCEFTKEKVSAMRHGRG 592

Query: 144 TPALASH 124
            P+   H
Sbjct: 593 LPSTPCH 599

>ref|XP_301591.1| similar to Protein C20orf27 [Homo sapiens]
          Length = 166

 Score = 33.9 bits (76), Expect = 1.1
 Identities = 26/81 (32%), Positives = 32/81 (39%)
 Frame = +2

Query: 122 ACEARAGVALCGPGPLVCSRLASARSPPMHVHQTFLLGCVDQPLSIVIWGNLPHVRHNSD 301
           ACE  AG   CG  PL    LA+ARSP  H       GC   P    +W  +  +R    
Sbjct: 94  ACEGGAGA--CGEVPLPPGTLANARSPVDH------SGCTVDP---EVWVQIQRIRRILS 142

Query: 302 DSRGSQSRKANLYAPSHKHGA 364
                  +K  L +  H  GA
Sbjct: 143 GPSSKPQQKKGLDSLDHLQGA 163

>ref|XP_146245.1| similar to enigma homolog [Rattus norvegicus] [Mus musculus]
          Length = 211

 Score = 33.9 bits (76), Expect = 1.1
 Identities = 25/60 (41%), Positives = 29/60 (47%), Gaps = 2/60 (3%)
 Frame = +3

Query: 279 RTCATTVTTLVALNQGKLTSTRHHISMGPRAPLAPLH--TER*HTSRNAPHADKTCSSPP 452
           R  AT  T LV + +    +T  H S  P A   PLH    R H S N   AD+ CSSPP
Sbjct: 83  RASATAKTELVTVQKEAHAATSSHASPPPVAAATPLHLSASRLHVSANL-SADQ-CSSPP 140



EST assemble image


clone accession position
1 LCL060h08_r AV629556 1 441
2 CL60f11_r AV396370 46 531




Chlamydomonas reinhardtii
Kazusa DNA Research Institute