KCC000752A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000752A_C01 KCC000752A_c01
ggattGTGAGATACGTGGTGCTTTCCTAGGCGGTGTTTGCTTCACTCGGACTTGGGCGGT
CTCGGCGTATAAAGCAATCTTTGCTCCGTTGCTGAGGGCAATTCGCGAATGGCGCTCGCC
GCCGCTGCCGCAAGGCGCGCGGTGGCTGATGGAGTGCCGGGGCTCATTTACAGCCTGCGG
TGGTCCCGGCTGGGGCTGCATTCAACATCAGCTGCGTGGAACCCAGCGGAGCCGAAGCCG
GTGCCTCTGGCAAAGCTAAAGGACAGCTTTAATGAGGGCACTAGCATTACGTATCTGGAG
GAGCTGGAGGAGCGGTACCACAAGGACCCGGCGTCGGTCGACCGCAGCTGGCAGGCCTTT
TTCCGCAACCTGGACCACGGCGTGACCGGCGAGGCCATGGCTGAGTCCTTTGACGCGTTT
GAGAAGGGCAAGCTGGCCATGAGCCCCTTCACCGCCGCAGCCATCTCCAACCAGACCGTG
CAGGAGTCCATGCGGCTGCTGCTCATGATCCGTGCATACCAGGTGCTGGGCCACTTCGCC
GCGGACCTGGACCCGCTGCGCATCAGCGGCCACACGCACCCGCCCGAGCTGGACCCGGCC
TTCTGGGGCTTCAAGGACACGGACCTGGACCGAGAGTTCTTTGTGGGCAACTGGAACCAG
AGCGGCTTCCTGGCTGAGGGCCGGCCCACCCGCACGCTGCGGGAGATGCTGACCCGCCTG
CGGGAGACCTACTGCAGCCACATCGGCTACGAGTACATGCACATCCCCGAGCGCGACAAG
TGCAACTGGATCCGCGAGCGCATCGAGACCATCGACCCGGTGCAGTTCACCAAGCAGCAG
AAGCTGCACATGCTGGACCGGCTGTCCTGGTCGGACATGTTTGAGACCTTCCTGGCCAAC
AAGTACACCGCGGCAAAGAGGTTCGGTCTGGAGGGCGCGGAGAGCCTTATCCCCGGCATG
AAGACGGTCATCGACACCGCCGCCGACCTGGGCGTGCAGTCCGTGGTCATCGGCATGCCC
CACCGAGGCCGCCTGAACGTGCTGGCCAATGTGGTGCGCAAGCCCATGAGCCAGATCTTC
TCCGAGTTCGCCGGCAAGGAGCCCATCGCGCACGAGGGCGAGTACACGGGCAGCGGCGAC
GTCAAGTACCACCTGGGCACCAGCTTCAACCGGCCCACGGTGCACGGCAAGATGGTGCAC
CTGTCGCTGGTGGCCAACCCCAGCCACCTGGAGGCGGTCAACACGGTGGTGCTGGGCAAG
ACACGAGCCAAGCAGTACTACAGCGAGGACCACGAGCGCGGGCGCCACCTGGCCATCCTG
CTTCACGGCGACGGCGCCTTCAGCGGCCAGGGCATTGTGTACGAGACGCTGGACATGAGC
GGCCTGCCCGACTACACCGTGGGCGGCACCATACACCTGGTGGTGAACAACCAGGTGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000752A_C01 KCC000752A_c01
         (1439 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC84070.1| putative 2-oxoglutarate dehydrogenase, E1 subuni...   499  e-140
ref|NP_201376.1| 2-oxoglutarate dehydrogenase, E1 component [Ara...   496  e-139
pir||T05894 probable oxoglutarate dehydrogenase (lipoamide) (EC ...   496  e-139
pir||T50644 oxoglutarate dehydrogenase (lipoamide) (EC 1.2.4.2) ...   496  e-139
gb|AAO42889.1| At3g55410 [Arabidopsis thaliana]                       494  e-138

>dbj|BAC84070.1| putative 2-oxoglutarate dehydrogenase, E1 subunit [Oryza sativa
            (japonica cultivar-group)]
          Length = 1008

 Score =  499 bits (1284), Expect = e-140
 Identities = 245/417 (58%), Positives = 307/417 (72%), Gaps = 4/417 (0%)
 Frame = +1

Query: 199  HSTSAAWNPAEPKP--VPLAKLKDSFNEGTSITYLEELEERYHKDPASVDRSWQAFFRNL 372
            HS   AW  + P P  VPL++L DSF +GTS  YLEEL+  +  DP+SVD SW  FFRN 
Sbjct: 27   HSARPAWRSSAPVPRAVPLSRLTDSFLDGTSSVYLEELQRAWEADPSSVDESWDNFFRNF 86

Query: 373  DHGVTGEAMAESFDAFEKGKLAMSPFTAAAISNQTVQESMRLLLMIRAYQVLGHFAADLD 552
                                L  +  ++A +S QT+QESM+LLL++RAYQV GH  A LD
Sbjct: 87   --------------------LGQAAPSSAGLSGQTIQESMQLLLLVRAYQVNGHMKAKLD 126

Query: 553  PLRISGHTHPPELDPAFWGFKDTDLDREFFVGNWNQSGFLAEGRPTRTLREMLTRLRETY 732
            PLR+     P +LD + +GF + DLDREFF+G W  +GFL++ RP  TLRE+L++L + Y
Sbjct: 127  PLRLDDRAVPDDLDLSLYGFTEADLDREFFLGVWRMAGFLSDNRPVLTLREILSKLEQAY 186

Query: 733  CSHIGYEYMHIPERDKCNWIRERIETIDPVQFTKQQKLHMLDRLSWSDMFETFLANKYTA 912
            C  IGYEYMHIP+RDKCNW+R++IET    ++ K ++L MLDRL WS  FE FLA K+  
Sbjct: 187  CGPIGYEYMHIPDRDKCNWLRDKIETAKLKEYNKDRRLVMLDRLIWSTQFENFLATKWAT 246

Query: 913  AKRFGLEGAESLIPGMKTVIDTAADLGVQSVVIGMPHRGRLNVLANVVRKPMSQIFSEF- 1089
            AKRFGLEG E+LIPGMK + D AADLGV+++VIGMPHRGRLNVL NVVRKP+SQIFSEF 
Sbjct: 247  AKRFGLEGGETLIPGMKEMFDRAADLGVENIVIGMPHRGRLNVLGNVVRKPLSQIFSEFT 306

Query: 1090 AGKEPI-AHEGEYTGSGDVKYHLGTSFNRPTVHGKMVHLSLVANPSHLEAVNTVVLGKTR 1266
             G  P+   +G YTG+GDVKYHLGTS++RPT  GK +HLSLVANPSHLEAV+ VV+GKTR
Sbjct: 307  GGTRPVEGEDGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVIGKTR 366

Query: 1267 AKQYYSEDHERGRHLAILLHGDGAFSGQGIVYETLDMSGLPDYTVGGTIHLVVNNQV 1437
            AKQ+YS D +R +++ IL+HGDG+F+GQG+VYETL +S LP YT GGTIH+VVNNQV
Sbjct: 367  AKQFYSNDLDRTKNMGILIHGDGSFAGQGVVYETLHLSALPSYTTGGTIHIVVNNQV 423

>ref|NP_201376.1| 2-oxoglutarate dehydrogenase, E1 component [Arabidopsis thaliana]
            gi|10177333|dbj|BAB10682.1| 2-oxoglutarate dehydrogenase,
            E1 component [Arabidopsis thaliana]
            gi|18389254|gb|AAL67070.1| putative 2-oxoglutarate
            dehydrogenase E1 component [Arabidopsis thaliana]
            gi|20465597|gb|AAM20281.1| putative 2-oxoglutarate
            dehydrogenase E1 component [Arabidopsis thaliana]
          Length = 1025

 Score =  496 bits (1277), Expect = e-139
 Identities = 242/403 (60%), Positives = 301/403 (74%), Gaps = 1/403 (0%)
 Frame = +1

Query: 232  PKPVPLAKLKDSFNEGTSITYLEELEERYHKDPASVDRSWQAFFRNLDHGVTGEAMAESF 411
            P+PVPL+KL DSF +GTS  YLEEL+  +  DP SVD SW  FFRN      G+A     
Sbjct: 57   PRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNF----VGQAS---- 108

Query: 412  DAFEKGKLAMSPFTAAAISNQTVQESMRLLLMIRAYQVLGHFAADLDPLRISGHTHPPEL 591
                         T+  IS QT+QESMRLLL++RAYQV GH  A LDPL +     P +L
Sbjct: 109  -------------TSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEKREIPEDL 155

Query: 592  DPAFWGFKDTDLDREFFVGNWNQSGFLAEGRPTRTLREMLTRLRETYCSHIGYEYMHIPE 771
             P  +GF + DLDREFF+G W  SGFL+E RP +TLR +L+RL + YC  IGYEYMHI +
Sbjct: 156  TPGLYGFTEADLDREFFLGVWRMSGFLSENRPVQTLRSILSRLEQAYCGTIGYEYMHIAD 215

Query: 772  RDKCNWIRERIETIDPVQFTKQQKLHMLDRLSWSDMFETFLANKYTAAKRFGLEGAESLI 951
            RDKCNW+R++IET  P Q+  ++++ + DRL+WS  FE FLA K+T AKRFGLEGAESLI
Sbjct: 216  RDKCNWLRDKIETPTPRQYNSERRMVIYDRLTWSTQFENFLATKWTTAKRFGLEGAESLI 275

Query: 952  PGMKTVIDTAADLGVQSVVIGMPHRGRLNVLANVVRKPMSQIFSEFA-GKEPIAHEGEYT 1128
            PGMK + D +ADLGV+++VIGMPHRGRLNVL NVVRKP+ QIFSEF+ G  P+   G YT
Sbjct: 276  PGMKEMFDRSADLGVENIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYT 335

Query: 1129 GSGDVKYHLGTSFNRPTVHGKMVHLSLVANPSHLEAVNTVVLGKTRAKQYYSEDHERGRH 1308
            G+GDVKYHLGTS++RPT  GK +HLSLVANPSHLEAV+ VV+GKTRAKQYY++D  R ++
Sbjct: 336  GTGDVKYHLGTSYDRPTRGGKHLHLSLVANPSHLEAVDPVVIGKTRAKQYYTKDENRTKN 395

Query: 1309 LAILLHGDGAFSGQGIVYETLDMSGLPDYTVGGTIHLVVNNQV 1437
            + IL+HGDG+F+GQG+VYETL +S LP+Y  GGT+H+VVNNQV
Sbjct: 396  MGILIHGDGSFAGQGVVYETLHLSALPNYCTGGTVHIVVNNQV 438

>pir||T05894 probable oxoglutarate dehydrogenase (lipoamide) (EC 1.2.4.2) -
            Arabidopsis thaliana gi|2827711|emb|CAA16684.1|
            oxoglutarate dehydrogenase - like protein [Arabidopsis
            thaliana]
          Length = 973

 Score =  496 bits (1277), Expect = e-139
 Identities = 242/403 (60%), Positives = 301/403 (74%), Gaps = 1/403 (0%)
 Frame = +1

Query: 232  PKPVPLAKLKDSFNEGTSITYLEELEERYHKDPASVDRSWQAFFRNLDHGVTGEAMAESF 411
            P+PVPL+KL DSF +GTS  YLEEL+  +  DP SVD SW  FFRN      G+A     
Sbjct: 57   PRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNF----VGQAS---- 108

Query: 412  DAFEKGKLAMSPFTAAAISNQTVQESMRLLLMIRAYQVLGHFAADLDPLRISGHTHPPEL 591
                         T+  IS QT+QESMRLLL++RAYQV GH  A LDPL +     P +L
Sbjct: 109  -------------TSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEKREIPEDL 155

Query: 592  DPAFWGFKDTDLDREFFVGNWNQSGFLAEGRPTRTLREMLTRLRETYCSHIGYEYMHIPE 771
             P  +GF + DLDREFF+G W  SGFL+E RP +TLR +L+RL + YC  IGYEYMHI +
Sbjct: 156  TPGLYGFTEADLDREFFLGVWRMSGFLSENRPVQTLRSILSRLEQAYCGTIGYEYMHIAD 215

Query: 772  RDKCNWIRERIETIDPVQFTKQQKLHMLDRLSWSDMFETFLANKYTAAKRFGLEGAESLI 951
            RDKCNW+R++IET  P Q+  ++++ + DRL+WS  FE FLA K+T AKRFGLEGAESLI
Sbjct: 216  RDKCNWLRDKIETPTPRQYNSERRMVIYDRLTWSTQFENFLATKWTTAKRFGLEGAESLI 275

Query: 952  PGMKTVIDTAADLGVQSVVIGMPHRGRLNVLANVVRKPMSQIFSEFA-GKEPIAHEGEYT 1128
            PGMK + D +ADLGV+++VIGMPHRGRLNVL NVVRKP+ QIFSEF+ G  P+   G YT
Sbjct: 276  PGMKEMFDRSADLGVENIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYT 335

Query: 1129 GSGDVKYHLGTSFNRPTVHGKMVHLSLVANPSHLEAVNTVVLGKTRAKQYYSEDHERGRH 1308
            G+GDVKYHLGTS++RPT  GK +HLSLVANPSHLEAV+ VV+GKTRAKQYY++D  R ++
Sbjct: 336  GTGDVKYHLGTSYDRPTRGGKHLHLSLVANPSHLEAVDPVVIGKTRAKQYYTKDENRTKN 395

Query: 1309 LAILLHGDGAFSGQGIVYETLDMSGLPDYTVGGTIHLVVNNQV 1437
            + IL+HGDG+F+GQG+VYETL +S LP+Y  GGT+H+VVNNQV
Sbjct: 396  MGILIHGDGSFAGQGVVYETLHLSALPNYCTGGTVHIVVNNQV 438

>pir||T50644 oxoglutarate dehydrogenase (lipoamide) (EC 1.2.4.2) E1 chain
            [imported] - Arabidopsis thaliana
            gi|4210330|emb|CAA11552.1| 2-oxoglutarate dehydrogenase,
            E1 subunit [Arabidopsis thaliana]
          Length = 1027

 Score =  496 bits (1277), Expect = e-139
 Identities = 242/403 (60%), Positives = 301/403 (74%), Gaps = 1/403 (0%)
 Frame = +1

Query: 232  PKPVPLAKLKDSFNEGTSITYLEELEERYHKDPASVDRSWQAFFRNLDHGVTGEAMAESF 411
            P+PVPL+KL DSF +GTS  YLEEL+  +  DP SVD SW  FFRN      G+A     
Sbjct: 57   PRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNF----VGQAS---- 108

Query: 412  DAFEKGKLAMSPFTAAAISNQTVQESMRLLLMIRAYQVLGHFAADLDPLRISGHTHPPEL 591
                         T+  IS QT+QESMRLLL++RAYQV GH  A LDPL +     P +L
Sbjct: 109  -------------TSPGISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEKREIPEDL 155

Query: 592  DPAFWGFKDTDLDREFFVGNWNQSGFLAEGRPTRTLREMLTRLRETYCSHIGYEYMHIPE 771
             P  +GF + DLDREFF+G W  SGFL+E RP +TLR +L+RL + YC  IGYEYMHI +
Sbjct: 156  TPGLYGFTEADLDREFFLGVWRMSGFLSENRPVQTLRSILSRLEQAYCGTIGYEYMHIAD 215

Query: 772  RDKCNWIRERIETIDPVQFTKQQKLHMLDRLSWSDMFETFLANKYTAAKRFGLEGAESLI 951
            RDKCNW+R++IET  P Q+  ++++ + DRL+WS  FE FLA K+T AKRFGLEGAESLI
Sbjct: 216  RDKCNWLRDKIETPTPRQYNSERRMVIYDRLTWSTQFENFLATKWTTAKRFGLEGAESLI 275

Query: 952  PGMKTVIDTAADLGVQSVVIGMPHRGRLNVLANVVRKPMSQIFSEFA-GKEPIAHEGEYT 1128
            PGMK + D +ADLGV+++VIGMPHRGRLNVL NVVRKP+ QIFSEF+ G  P+   G YT
Sbjct: 276  PGMKEMFDRSADLGVENIVIGMPHRGRLNVLGNVVRKPLRQIFSEFSGGTRPVDEVGLYT 335

Query: 1129 GSGDVKYHLGTSFNRPTVHGKMVHLSLVANPSHLEAVNTVVLGKTRAKQYYSEDHERGRH 1308
            G+GDVKYHLGTS++RPT  GK +HLSLVANPSHLEAV+ VV+GKTRAKQYY++D  R ++
Sbjct: 336  GTGDVKYHLGTSYDRPTRGGKHLHLSLVANPSHLEAVDPVVIGKTRAKQYYTKDENRTKN 395

Query: 1309 LAILLHGDGAFSGQGIVYETLDMSGLPDYTVGGTIHLVVNNQV 1437
            + IL+HGDG+F+GQG+VYETL +S LP+Y  GGT+H+VVNNQV
Sbjct: 396  MGILIHGDGSFAGQGVVYETLHLSALPNYCTGGTVHIVVNNQV 438

>gb|AAO42889.1| At3g55410 [Arabidopsis thaliana]
          Length = 1017

 Score =  494 bits (1272), Expect = e-138
 Identities = 245/402 (60%), Positives = 301/402 (73%)
 Frame = +1

Query: 232  PKPVPLAKLKDSFNEGTSITYLEELEERYHKDPASVDRSWQAFFRNLDHGVTGEAMAESF 411
            P+ VPL+KL DSF +GTS  YLEEL+  +  DP SVD SW  FFRN              
Sbjct: 54   PRAVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNF------------- 100

Query: 412  DAFEKGKLAMSPFTAAAISNQTVQESMRLLLMIRAYQVLGHFAADLDPLRISGHTHPPEL 591
                 G+ A SP     IS QT+QESMRLLL++RAYQV GH  A LDPL +     P +L
Sbjct: 101  ----VGQAATSP----GISGQTIQESMRLLLLVRAYQVNGHMKAKLDPLGLEQREIPEDL 152

Query: 592  DPAFWGFKDTDLDREFFVGNWNQSGFLAEGRPTRTLREMLTRLRETYCSHIGYEYMHIPE 771
            D A +GF + DLDREFF+G W  SGF++E RP +TLR +LTRL + YC +IG+EYMHI +
Sbjct: 153  DLALYGFTEADLDREFFLGVWQMSGFMSENRPVQTLRSILTRLEQAYCGNIGFEYMHIAD 212

Query: 772  RDKCNWIRERIETIDPVQFTKQQKLHMLDRLSWSDMFETFLANKYTAAKRFGLEGAESLI 951
            RDKCNW+RE+IET  P ++ ++++  +LDRL+WS  FE FLA K+T AKRFGLEG ESLI
Sbjct: 213  RDKCNWLREKIETPTPWRYNRERREVILDRLAWSTQFENFLATKWTTAKRFGLEGGESLI 272

Query: 952  PGMKTVIDTAADLGVQSVVIGMPHRGRLNVLANVVRKPMSQIFSEFAGKEPIAHEGEYTG 1131
            PGMK + D AADLGV+S+VIGM HRGRLNVL+NVVRKP+ QIFSEF+G      E  YTG
Sbjct: 273  PGMKEMFDRAADLGVESIVIGMSHRGRLNVLSNVVRKPLRQIFSEFSGGIRPVDEVGYTG 332

Query: 1132 SGDVKYHLGTSFNRPTVHGKMVHLSLVANPSHLEAVNTVVLGKTRAKQYYSEDHERGRHL 1311
            +GDVKYHLGTS++RPT  GK +HLSLVANPSHLEA ++VV+GKTRAKQYYS D +R ++L
Sbjct: 333  TGDVKYHLGTSYDRPTRGGKKIHLSLVANPSHLEAADSVVVGKTRAKQYYSNDLDRTKNL 392

Query: 1312 AILLHGDGAFSGQGIVYETLDMSGLPDYTVGGTIHLVVNNQV 1437
             IL+HGDG+F+GQG+VYETL +S LP+YT GGTIH+VVNNQV
Sbjct: 393  GILIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVVNNQV 434



EST assemble image


clone accession position
1 HCL022a06_r AV640764 1 448
2 MXL045f10_r BP095677 6 173
3 MXL075g12_r BP097444 6 419
4 HCL097e12_r AV645056 8 284
5 HCL082f05_r AV644134 12 542
6 HCL085d04_r AV644282 50 565
7 MXL018f01_r BP094133 127 378
8 LCL077e12_r AV630343 465 949
9 HCL049d05_r AV642303 625 1130
10 MXL036e03_r BP095139 685 1062
11 CL60f09_r AV396384 822 1427
12 HCL075f02_r AV643767 953 1228
13 MXL085e12_r BP098029 1077 1440




Chlamydomonas reinhardtii
Kazusa DNA Research Institute