KCC000748A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000748A_C01 KCC000748A_c01
gcaccaggacctgCCTTACCTCGAGGGCTTGCCCTCGTGTCATTTGTCAGAGCCCGCACC
CGCTGCATCACACCGCGTCACCTAGTAGCCCCAAGGGATTGGGGGTTGGGGCGCTCGAAC
GCATCTTGTTGTGCACACCCGCCTTAATATACGCCTACCACCTGCCTACCATACGCGTAC
CGCACGGTACTCGAGCACACGTGCCAGCCATGGTGTGGGTGGCCCGCGTCGCCAACTGCG
GTTCTGTCTTACGATACAGAGGCACCTCGACATCGTCCTGGCCATCGGCTGCGCCGGGCA
CAGGCGGCAGCCCTCACCTTCTTGACGTTGCCTTCTGTAATCCAGCGCCAGCCTAGTTGT
ACACACATCATAGAGTTGATGCATTTCCGACCATAGTAGTTCACACCGAATTGGCACCCA
ACGTGCCATGTCGCCTTTCTTTCTTCCGATGATAGCTTCCGACTCTGCTCATCACGCTTG
TGTCGTGAGCCGCCTCACCGGCCCTTGCTCCAGACTACTGCTGCATCACTCTGCAGCAAC
AGCGCCCACTTCTTCAAAGCTCAGTCACCCAATGGACTGGGTTGGATGCCGCCTATTCTG
GCCGCCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000748A_C01 KCC000748A_c01
         (607 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||JC5559 lectin-B - Virginian pokeweed                              34  1.4
dbj|BAB40792.1| mitogen PL-B [Phytolacca americana]                    34  1.4
emb|CAE05928.1| OSJNBa0034E24.22 [Oryza sativa (japonica cultiva...    33  2.4
gb|AAF44744.1| K1 protein [Human herpesvirus 8]                        33  2.4
ref|ZP_00055982.1| COG0438: Glycosyltransferase [Magnetospirillu...    33  2.4

>pir||JC5559 lectin-B - Virginian pokeweed
          Length = 295

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 449 SEERKATWHVGCQFGVNYYGRKCINSMMCVQLGWRWITEG 330
           S+  +  WH G  FG     R C N + C + GW  ITEG
Sbjct: 124 SQCEQYNWHCGVDFG----NRTCPNDLCCSEWGWCGITEG 159

>dbj|BAB40792.1| mitogen PL-B [Phytolacca americana]
          Length = 361

 Score = 34.3 bits (77), Expect = 1.4
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = -3

Query: 449 SEERKATWHVGCQFGVNYYGRKCINSMMCVQLGWRWITEG 330
           S+  +  WH G  FG     R C N + C + GW  ITEG
Sbjct: 165 SQCEQYNWHCGVDFG----NRTCPNDLCCSEWGWCGITEG 200

>emb|CAE05928.1| OSJNBa0034E24.22 [Oryza sativa (japonica cultivar-group)]
           gi|32489573|emb|CAE04645.1| OSJNBa0061G20.1 [Oryza
           sativa (japonica cultivar-group)]
          Length = 444

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 24/75 (32%), Positives = 30/75 (40%)
 Frame = -2

Query: 411 IRCELLWSEMHQLYDVCTTRLALDYRRQRQEGEGCRLCPAQPMARTMSRCLCIVRQNRSW 232
           + C L   E   L DVC    A  Y+R + EGEG +     P  +    C    R   +W
Sbjct: 223 VLCPLGLEEYADL-DVCPVCGASRYKRAKSEGEGSKSKRGGPAKKVYYACHAHSRTETTW 281

Query: 231 RRGPPTPWLARVLEY 187
             G  T W A   EY
Sbjct: 282 NEGTRT-WDAYAQEY 295

>gb|AAF44744.1| K1 protein [Human herpesvirus 8]
          Length = 282

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 25/85 (29%), Positives = 41/85 (47%), Gaps = 1/85 (1%)
 Frame = +3

Query: 15  LTSRACPRVICQSPHPLHHTASPSSPKGLGVGALERILLCTPALIYA-YHLPTIRVPHGT 191
           L++R C    C +  P  HT S SS  G    +  R++   PA  +A   +  ++ P+ T
Sbjct: 162 LSNRICFLAHCANITPETHTVSVSSTTGFKTFSTNRLVNIIPATTHAVVAVQEVKSPN-T 220

Query: 192 RAHVPAMVWVARVANCGSVLRYRGT 266
              VP +V++  VA  G++    GT
Sbjct: 221 HIEVPFLVFMTLVALIGTMCGILGT 245

>ref|ZP_00055982.1| COG0438: Glycosyltransferase [Magnetospirillum magnetotacticum]
          Length = 338

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = +2

Query: 44  LSEPAPAASHRVT**PQGIGGWGARTHLVVHTRLNIRLP--PAYHTRTARYSSTRASHGV 217
           L + AP A H  T   +G  GW AR   + H     RLP   AYHT+   Y STR    V
Sbjct: 68  LDDFAPEAVHIAT---EGPLGWAARAWCLEH-----RLPFTTAYHTKFPEYISTRTGVPV 119

Query: 218 GGPRRQLR 241
             P   +R
Sbjct: 120 SWPYALMR 127



EST assemble image


clone accession position
1 CM060d01_r AV390732 1 607
2 CL60d01_r AV396374 14 477




Chlamydomonas reinhardtii
Kazusa DNA Research Institute