KCC000742A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000742A_C01 KCC000742A_c01
TCCCCAGCTTGCTGATTCAGGGCACCTCGAGAGCGCATTCTCTGAGCCTCGCCCTTCGCT
AGCTCTCAAGCCTTCAACCTCTACACCGGACAACCGCGGAATGTACATCGCATGAGCGCT
CAGTTCCTTGCTTACGTGCTGGTTCTCGAGGCTGTGCGGGCCAACTCGTTCGGGTTCGTC
GCGTCTTCGTCAGCTGCTTCCGCTTCGGCAAGCTACGAAGAATGTCGAACGTCGCCGTCG
AGCATCCTCGGGCGTTCCCGACCACGGTCGGCTTCCGCGTCATGGGCGGCTTCGAGCTGC
CTGCTGCTCAGCTCGCCCCGCCCTCGACGCCGGAAGTGGGCTACCTGGGCGCCAGCGCAG
GCGCCAGCAGCAGCCCTCACAGCGCTGTGCTGACGCCGCCGCAGCAGCCCCCCAAGCTGT
CTTCGGTGCCTCCGCTGTCGGCGGAGCGCGCCTATGGCACGCCCACGGGTTCGCTGCTGC
AGCGTGCGCCGGTGGCCCTCAGCAGCAGCTTAGTCTCGAGCGCGCCCCACAAGCCCGCGG
GCGTGGCTGACCTCGTCACGTCCCTGTCGGCCGGCAACCCGGAAAGCCCGAGTGCCGTCG
GCTGGCAGGGCCTGCTGGAGTTCAGCGAGACCAGCGGCTGCAGCGGCGTGCTGGGTCCGA
AGACTACGTCGGAGGACCTTGACAGCATCCTGAACCGCGACTGCAAGATTGAGATCTGCT
GCACCGCCCACACCTCCCCCGCGGTGCGGCGCCTGGTCAAGTCCGTCATCCGTGGGCTGC
GCGCTTGCCAGGAGCCGGACAAGGCGGCGGACGGCATGGGCGGCACCCTACTTCTTCTCC
AACGAGGCGGGCAAGAAGGCCGCCATTCTCAAGCCCTGCGACGAGGAGCCCCTCGCGCCC
AACAACCCCAAGGGCTACGTCGGCCGCCAGCTGGGTGACCCTGGCTGGAAGCCGACCGTT
CGCGTGGGCGAGGCCGCCATCCGTGAGGTGGCTGCCTACCTGCTCGACCACGACGGCTTT
GCGCGCGTTCCCACCAGCGTGCTGGTGCGCGCGCGCCACCCCGTCTTCTGCTACCAGGCT
TCACGCGCCTCAGGCGCGGGCGCTCCGACGCCCGTCGCCAGCTCTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000742A_C01 KCC000742A_c01
         (1126 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAE02809.1| OSJNBa0043A12.14 [Oryza sativa (japonica cultiva...   112  8e-25
ref|NP_563930.1| phosphatidylinositol 3- and 4-kinase family [Ar...   111  2e-24
pir||F86269 F21F23.8 protein - Arabidopsis thaliana gi|8920569|g...   111  2e-24
ref|NP_565307.1| phosphatidylinositol 3- and 4-kinase family [Ar...   106  3e-24
pir||D84453 hypothetical protein At2g03890 [imported] - Arabidop...   106  3e-24

>emb|CAE02809.1| OSJNBa0043A12.14 [Oryza sativa (japonica cultivar-group)]
          Length = 605

 Score =  112 bits (279), Expect(2) = 8e-25
 Identities = 51/80 (63%), Positives = 60/80 (74%)
 Frame = +1

Query: 829  YFFSNEAGKKAAILKPCDEEPLAPNNPKGYVGRQLGDPGWKPTVRVGEAAIREVAAYLLD 1008
            Y+F N +G + AI+KP DEEP APNNPKG+VGR LG PG K +VRVGE   REVAAYLLD
Sbjct: 162  YYFRNISGDRVAIVKPTDEEPFAPNNPKGFVGRALGQPGLKKSVRVGETGFREVAAYLLD 221

Query: 1009 HDGFARVPTSVLVRARHPVF 1068
            HD FA VP + LV+  H +F
Sbjct: 222  HDNFANVPPTALVKITHSIF 241

 Score = 25.0 bits (53), Expect(2) = 8e-25
 Identities = 12/45 (26%), Positives = 24/45 (52%)
 Frame = +3

Query: 693 NRDCKIEICCTAHTSPAVRRLVKSVIRGLRACQEPDKAADGMGGT 827
           +R   +E+   + +   V+RLV  V+  +R+  +P     G+GG+
Sbjct: 117 DRSGLVEMLGCSISCARVKRLVDDVVTAIRSGVDPVPIGSGLGGS 161

>ref|NP_563930.1| phosphatidylinositol 3- and 4-kinase family [Arabidopsis thaliana]
            gi|16974596|gb|AAL31202.1| At1g13640/F21F23_7
            [Arabidopsis thaliana] gi|23506173|gb|AAN31098.1|
            At1g13640/F21F23_7 [Arabidopsis thaliana]
          Length = 622

 Score =  111 bits (278), Expect(2) = 2e-24
 Identities = 51/80 (63%), Positives = 61/80 (75%)
 Frame = +1

Query: 829  YFFSNEAGKKAAILKPCDEEPLAPNNPKGYVGRQLGDPGWKPTVRVGEAAIREVAAYLLD 1008
            Y+F +E G+  AI+KP DEEP APNNPKG+VG+ LG PG KP+VRVGE   REVAAYLLD
Sbjct: 172  YYFRDEKGQSVAIVKPTDEEPFAPNNPKGFVGKALGQPGLKPSVRVGETGFREVAAYLLD 231

Query: 1009 HDGFARVPTSVLVRARHPVF 1068
            +D FA VP + LV+  H VF
Sbjct: 232  YDHFANVPPTALVKITHSVF 251

 Score = 24.3 bits (51), Expect(2) = 2e-24
 Identities = 22/101 (21%), Positives = 40/101 (38%)
 Frame = +3

Query: 552 LVTSLSAGNPESPSAVGWQGLLEFSETSGCSGVLGPKTTSEDLDSILNRDCKIEICCTAH 731
           L   LSA   +SP  +  + L+  S ++ C    G     +D      R   IEI   + 
Sbjct: 87  LKNDLSAVRNDSPLLLK-RNLMHRSSSTPCLSPTGNDLQRKD------RSGPIEILSHSP 139

Query: 732 TSPAVRRLVKSVIRGLRACQEPDKAADGMGGTLLLLQRGGQ 854
              ++++    +++ ++   EP     G+GG        GQ
Sbjct: 140 CFLSLKQTANDIVKAMKMGVEPIPVNGGLGGAYYFRDEKGQ 180

>pir||F86269 F21F23.8 protein - Arabidopsis thaliana
            gi|8920569|gb|AAF81291.1|AC027656_8 Strong similarity to
            an unknown protein At2g03890 gi|4582436 from Arabidopsis
            thaliana BAC T18C20 gb|AC007196.  ESTs gb|AI993825,
            gb|T13863, gb|N65091, gb|AI998990, gb|W43493 and
            gb|AA585974 come from this gene
          Length = 620

 Score =  111 bits (278), Expect(2) = 2e-24
 Identities = 51/80 (63%), Positives = 61/80 (75%)
 Frame = +1

Query: 829  YFFSNEAGKKAAILKPCDEEPLAPNNPKGYVGRQLGDPGWKPTVRVGEAAIREVAAYLLD 1008
            Y+F +E G+  AI+KP DEEP APNNPKG+VG+ LG PG KP+VRVGE   REVAAYLLD
Sbjct: 170  YYFRDEKGQSVAIVKPTDEEPFAPNNPKGFVGKALGQPGLKPSVRVGETGFREVAAYLLD 229

Query: 1009 HDGFARVPTSVLVRARHPVF 1068
            +D FA VP + LV+  H VF
Sbjct: 230  YDHFANVPPTALVKITHSVF 249

 Score = 24.3 bits (51), Expect(2) = 2e-24
 Identities = 22/101 (21%), Positives = 40/101 (38%)
 Frame = +3

Query: 552 LVTSLSAGNPESPSAVGWQGLLEFSETSGCSGVLGPKTTSEDLDSILNRDCKIEICCTAH 731
           L   LSA   +SP  +  + L+  S ++ C    G     +D      R   IEI   + 
Sbjct: 85  LKNDLSAVRNDSPLLLK-RNLMHRSSSTPCLSPTGNDLQRKD------RSGPIEILSHSP 137

Query: 732 TSPAVRRLVKSVIRGLRACQEPDKAADGMGGTLLLLQRGGQ 854
              ++++    +++ ++   EP     G+GG        GQ
Sbjct: 138 CFLSLKQTANDIVKAMKMGVEPIPVNGGLGGAYYFRDEKGQ 178

>ref|NP_565307.1| phosphatidylinositol 3- and 4-kinase family [Arabidopsis thaliana]
            gi|15810175|gb|AAL06989.1| At2g03890/T18C20.9
            [Arabidopsis thaliana] gi|20198186|gb|AAD24822.2|
            expressed protein [Arabidopsis thaliana]
            gi|27363386|gb|AAO11612.1| At2g03890/T18C20.9
            [Arabidopsis thaliana]
          Length = 650

 Score =  106 bits (264), Expect(2) = 3e-24
 Identities = 49/80 (61%), Positives = 59/80 (73%)
 Frame = +1

Query: 829  YFFSNEAGKKAAILKPCDEEPLAPNNPKGYVGRQLGDPGWKPTVRVGEAAIREVAAYLLD 1008
            Y+F N+ G+  AI+KP DEEP APNNPKG+VG+ LG PG K +VRVGE   REVAAYLLD
Sbjct: 180  YYFRNKRGESVAIVKPTDEEPFAPNNPKGFVGKALGQPGLKSSVRVGETGFREVAAYLLD 239

Query: 1009 HDGFARVPTSVLVRARHPVF 1068
            +  FA VP + LV+  H VF
Sbjct: 240  YGRFANVPPTALVKITHSVF 259

 Score = 28.9 bits (63), Expect(2) = 3e-24
 Identities = 26/101 (25%), Positives = 41/101 (39%)
 Frame = +3

Query: 552 LVTSLSAGNPESPSAVGWQGLLEFSETSGCSGVLGPKTTSEDLDSILNRDCKIEICCTAH 731
           L   LSA   +SP  +       F   S  +  L P  T  DL    +R   IEI   + 
Sbjct: 95  LTNDLSAVRNDSPLLLK----RNFMHRSSSTPCLSP--TGRDLQQ-KDRSGPIEILGHSD 147

Query: 732 TSPAVRRLVKSVIRGLRACQEPDKAADGMGGTLLLLQRGGQ 854
               V+ +VK +++ ++   EP     G+GG      + G+
Sbjct: 148 CFSIVKHMVKDIVKAMKMGVEPLPVHSGLGGAYYFRNKRGE 188

>pir||D84453 hypothetical protein At2g03890 [imported] - Arabidopsis thaliana
          Length = 638

 Score =  106 bits (264), Expect(2) = 3e-24
 Identities = 49/80 (61%), Positives = 59/80 (73%)
 Frame = +1

Query: 829  YFFSNEAGKKAAILKPCDEEPLAPNNPKGYVGRQLGDPGWKPTVRVGEAAIREVAAYLLD 1008
            Y+F N+ G+  AI+KP DEEP APNNPKG+VG+ LG PG K +VRVGE   REVAAYLLD
Sbjct: 168  YYFRNKRGESVAIVKPTDEEPFAPNNPKGFVGKALGQPGLKSSVRVGETGFREVAAYLLD 227

Query: 1009 HDGFARVPTSVLVRARHPVF 1068
            +  FA VP + LV+  H VF
Sbjct: 228  YGRFANVPPTALVKITHSVF 247

 Score = 28.9 bits (63), Expect(2) = 3e-24
 Identities = 26/101 (25%), Positives = 41/101 (39%)
 Frame = +3

Query: 552 LVTSLSAGNPESPSAVGWQGLLEFSETSGCSGVLGPKTTSEDLDSILNRDCKIEICCTAH 731
           L   LSA   +SP  +       F   S  +  L P  T  DL    +R   IEI   + 
Sbjct: 83  LTNDLSAVRNDSPLLLK----RNFMHRSSSTPCLSP--TGRDLQQ-KDRSGPIEILGHSD 135

Query: 732 TSPAVRRLVKSVIRGLRACQEPDKAADGMGGTLLLLQRGGQ 854
               V+ +VK +++ ++   EP     G+GG      + G+
Sbjct: 136 CFSIVKHMVKDIVKAMKMGVEPLPVHSGLGGAYYFRNKRGE 176



EST assemble image


clone accession position
1 MXL039c05_r BP095276 1 421
2 LCL025b02_r AV627329 52 563
3 MXL030h06_r BP094843 52 431
4 HCL036b09_r AV641554 58 564
5 HCL007f02_r AV639939 72 517
6 CL59d12_r AV397918 202 734
7 MXL021d07_r BP094334 267 558
8 LCL002f03_r AV626116 439 931
9 CL79b04_r AV397147 456 695
10 MXL020e10_r BP094284 530 994
11 MXL059b10_r BP096465 531 1020
12 HCL006c04_r AV639859 670 1190
13 MXL031e06_r BP094879 723 1106
14 MXL038d04_r BP095227 755 1170
15 HCL022f07_r AV640799 766 1226




Chlamydomonas reinhardtii
Kazusa DNA Research Institute