KCC000741A_c02
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000741A_C02 KCC000741A_c02
AAAGCCTTTGGCATCGACCGCGCTTGACCCGCCTTTTGAGAAGCGCGTTTCTCTTAGCAA
CCCACCTCTTTTGCGCAGGGCATGGCGTGAAAAGGACGCCATGTCTGCGGCTCAGACGTC
GACGATGCTGAAGGGTGCAGGAGGACAGGATAGCGAGCAGAAGGCGCCAGTAGCGGAGAC
CTTGACATTGCGGCTTGTTCCTCGGAGAAAGAAGAAGGACGAACGCGTCCACTGGTCCAA
GGACGTGCAGGAGATCAACGAGTTCTCGGGGAAATTCAAGTCGAAGAGTTAGGTGCAAGC
CTGGCTTTCAGAGTGCTGCCAATTCCACAAGCGGCGTGCTTTCGGAGAGTGGAGCGACGA
GGATGACAGCGACGCGGAGTGCGAGCAGTGCAGCAAGCCAGAGCAGAAGCCCGAGGAGGG
CCCCAGCTGAGCAGATTATGGGCCCGCGGCCGGTGCCAGGAGCCTCTGCAGTCTGCATGG
AGGGTTCTTGGGGTGCCGCTACTGACGTAACCTTCATGACATACGAAACAGCGCTGCTGG
TCGCTGTGGGCTCGCGCTCAGCATGCGCCCTTGGGTGTCCAGTCACCCGCCGCGTTGTCA
AGGTTGGATGTTGAATGAGCTGACAGCTTTGGATACAGTCTGCTGCAGCTTTGTTCCGCG
GGAGGTGGGCGCGCGGCGAGACGGGGCCACATGCAGAGCGTTTAGTCGGACCTTGACGGG
TTGCTATGGAGGGCCTGACATCTGACATGCAATAGGTGTTATCTGCGTGGAAATGTAGGC
AGGCCGTGCCGGCCGGGACTTTCCGCGTACATGCCGCGTTTGGTGACTGTGGGATGACGG
TGACTCGCCCCGAGCAATATGTGCAATGTCAGATAGGGGTCAGGCGCTGGGAACGCGCCG
GGGAGCGAGACGTTGACGTCGACTAGTTGTCCGACTGCAGGCTGAGTCGTGTGAGCTTGG
GCAGGGTCAAAGGCCGTGTGGGGCGTGTATTATGATAGCCCTAATCTTCGGGGAGCTGCC
ACGCGAAGGCTTGAAGCGACGATGTTAATTTCGCTGTTTTT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000741A_C02 KCC000741A_c02
         (1061 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_083908.1| protein phosphatase 1, regulatory (inhibitor) s...    50  5e-05
gb|AAH27737.1| Protein phosphatase 1, regulatory (inhibitor) sub...    48  3e-04
ref|XP_215296.1| similar to protein phosphatase 1, regulatory (i...    47  6e-04
ref|NP_068778.1| protein phosphatase 1, regulatory (inhibitor) s...    44  0.004
ref|NP_565720.1| expressed protein [Arabidopsis thaliana] gi|201...    43  0.008

>ref|NP_083908.1| protein phosphatase 1, regulatory (inhibitor) subunit 11; t-complex
           testis-expressed 5 [Mus musculus]
           gi|12837883|dbj|BAB23986.1| unnamed protein product [Mus
           musculus]
          Length = 131

 Score = 50.4 bits (119), Expect = 5e-05
 Identities = 32/81 (39%), Positives = 45/81 (55%)
 Frame = +2

Query: 152 SEQKAPVAETLTLRLVPRRKKKDERVHWSKDVQEINEFSGKFKSKS*VQAWLSECCQFHK 331
           +E   P  ++LT++L  R++K +++V WS D  + NE  G+  SK         CC + K
Sbjct: 23  TETTEPENQSLTMKL--RKRKPEKKVEWSSDTVD-NEHMGRRSSKC--------CCIYEK 71

Query: 332 RRAFGEWSDEDDSDAECEQCS 394
            RAFGE S E D D E E CS
Sbjct: 72  PRAFGESSTESDEDEE-EGCS 91

>gb|AAH27737.1| Protein phosphatase 1, regulatory (inhibitor) subunit 11 [Mus
           musculus] gi|26354252|dbj|BAC40754.1| unnamed protein
           product [Mus musculus]
          Length = 131

 Score = 48.1 bits (113), Expect = 3e-04
 Identities = 31/81 (38%), Positives = 44/81 (54%)
 Frame = +2

Query: 152 SEQKAPVAETLTLRLVPRRKKKDERVHWSKDVQEINEFSGKFKSKS*VQAWLSECCQFHK 331
           +E   P  ++L ++L  R++K +++V WS D  + NE  G+  SK         CC + K
Sbjct: 23  TETTEPENQSLIMKL--RKRKPEKKVEWSSDTVD-NEHMGRRSSKC--------CCIYEK 71

Query: 332 RRAFGEWSDEDDSDAECEQCS 394
            RAFGE S E D D E E CS
Sbjct: 72  PRAFGESSTESDEDEE-EGCS 91

>ref|XP_215296.1| similar to protein phosphatase 1, regulatory (inhibitor) subunit 11
           isoform 1; hemochromatosis candidate gene V;
           t-complex-associated-testis-expressed 5; inhibitor-3
           [Rattus norvegicus]
          Length = 127

 Score = 47.0 bits (110), Expect = 6e-04
 Identities = 28/71 (39%), Positives = 39/71 (54%)
 Frame = +2

Query: 167 PVAETLTLRLVPRRKKKDERVHWSKDVQEINEFSGKFKSKS*VQAWLSECCQFHKRRAFG 346
           P   +LT++L  R++K +++V WS D  + NE  G+  SK         CC + K RAFG
Sbjct: 24  PENRSLTIKL--RKRKPEKKVEWSSDTVD-NEHMGRRSSKC--------CCIYEKPRAFG 72

Query: 347 EWSDEDDSDAE 379
           E S E D D E
Sbjct: 73  ESSTESDEDEE 83

>ref|NP_068778.1| protein phosphatase 1, regulatory (inhibitor) subunit 11 isoform 1;
           hemochromatosis candidate gene V;
           t-complex-associated-testis-expressed 5; inhibitor-3
           [Homo sapiens] gi|3176438|gb|AAC52082.1| HCG V [Homo
           sapiens] gi|11322968|emb|CAC16920.1| protein phosphatase
           1, regulatory (inhibitor) subunit 11 [Homo sapiens]
           gi|11322969|emb|CAC16919.1| protein phosphatase 1,
           regulatory (inhibitor) subunit 11 [Homo sapiens]
           gi|15277241|dbj|BAB63334.1| Testis expressed gene [Homo
           sapiens] gi|27544370|dbj|BAC54919.1| protein phosphatase
           1, regulatory (inhibitor) subunit 11 [Homo sapiens]
           gi|32127799|dbj|BAC78187.1| HCGV [Pan troglodytes]
          Length = 126

 Score = 44.3 bits (103), Expect = 0.004
 Identities = 26/71 (36%), Positives = 39/71 (54%)
 Frame = +2

Query: 167 PVAETLTLRLVPRRKKKDERVHWSKDVQEINEFSGKFKSKS*VQAWLSECCQFHKRRAFG 346
           P   +LT++L  R++K +++V W+ D  + NE  G+  SK         CC + K RAFG
Sbjct: 23  PENRSLTIKL--RKRKPEKKVEWTSDTVD-NEHMGRRSSKC--------CCIYEKPRAFG 71

Query: 347 EWSDEDDSDAE 379
           E S E D + E
Sbjct: 72  ESSTESDEEEE 82

>ref|NP_565720.1| expressed protein [Arabidopsis thaliana] gi|20197895|gb|AAM15305.1|
           Expressed protein [Arabidopsis thaliana]
           gi|21555013|gb|AAM63754.1| unknown [Arabidopsis
           thaliana]
          Length = 107

 Score = 43.1 bits (100), Expect = 0.008
 Identities = 34/106 (32%), Positives = 46/106 (43%)
 Frame = +2

Query: 104 SAAQTSTMLKGAGGQDSEQKAPVAETLTLRLVPRRKKKDERVHWSKDVQEINEFSGKFKS 283
           S+A TS +L+    Q            T RLV R  +K ++V W KD    NEF  K  S
Sbjct: 9   SSATTSVILENPVSQSQP---------TERLVLRLNRKKKKVSW-KDGTVDNEFMQKKSS 58

Query: 284 KS*VQAWLSECCQFHKRRAFGEWSDEDDSDAECEQCSKPEQKPEEG 421
           K        +CC FHK++ F E  D ++ D     C    +  E G
Sbjct: 59  K--------KCCIFHKQKPFDE-DDSEEEDDNNHHCDHNHEHSESG 95



EST assemble image


clone accession position
1 HC034h08_r AV634557 1 565
2 HC015h06_r AV633033 86 564
3 CM036c02_r AV388811 93 462
4 HC025g01_r AV633822 96 620
5 HC034h07_r AV634556 102 248
6 LC100f04_r AV625978 107 491
7 CM089d04_r AV392245 109 703
8 MX217h06_r BP090039 110 416
9 HC072b11_r AV637363 125 551
10 CM032a01_r AV388497 135 488
11 CL59d04_r AV397909 533 1166
12 MXL082b09_r BP097842 557 1031
13 HC020e01_r AV633407 689 1175
14 LC034g08_r AV621348 776 1276




Chlamydomonas reinhardtii
Kazusa DNA Research Institute