KCC000738A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000738A_C01 KCC000738A_c01
CTGACACATAGGACACGCATAGGACTTAGTTTTAGGCAAACGAGTGTAGACACCCTCCGC
ATTGTGAGAGAGCATTACCCCAAAGGTCGCCAAACGCCATGGCGCACCATGGAGCTCTCT
ACAAGCTCTTCCTAGTTGCAGGTCTCTGTCTTGCAATTCAAGTTGATGCTGCATCACGCT
CGTACTTGACGCGGCCTCCGCCGCTGAAGCGGCCACCGCCCCACCGGAGCCCGCCGCGGC
AAGTCTCCCCTGCGCCCGTGGAGGTGGTGACTGTCCTGGTGAACGTGTCGGGCCAGCTGT
CTCAGTCTCTGGGGCACGGCATTGTGGAGAAGGACGCCAGCAGCGACGACAGCGCGTGGA
ACCTGGTGCTGCAGGAGGAGCAGATCGCCCGCCTGGTGCCCACCAGCCCCAAGACGCCCG
AGGAGGCGTCTGTGAACACACGCATTGAGCTGGAGACGGACGACACGCTCATCACCGGCG
ACCCCGTGGAGACGTCTCTGGCGCTGGACGTGCCCAAAAGCGTGGCGGACA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000738A_C01 KCC000738A_c01
         (531 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAA85408.1| ESTs AU078175(C51476),AU068986(C51476) correspon...    47  1e-04
ref|NP_295856.1| conserved hypothetical protein [Deinococcus rad...    46  3e-04
pir||A45195 adenylylcyclase type V-alpha - dog gi|290082|gb|AAA3...    45  4e-04
pir||A42904 adenylylcyclase type V - dog                               45  4e-04
gb|AAC44888.1| unknown [Nannocystis exedens]                           45  6e-04

>dbj|BAA85408.1| ESTs AU078175(C51476),AU068986(C51476) correspond to a region of
           the predicted gene.~similar to NADH dehydrogenase.
           (AC006532) [Oryza sativa (japonica cultivar-group)]
          Length = 181

 Score = 47.4 bits (111), Expect = 1e-04
 Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
 Frame = -1

Query: 435 SQTPP---RASWGWWAPGGRSAPPAAPGSTRCRRCWRPSPQCRAPETETAGPTRSPGQSP 265
           S+TP     A+WG  A G R   PAA G     RCW P+P  + P    A   R+    P
Sbjct: 4   SRTPAGGGAAAWGEAAAGRR---PAAVGRRAAERCWSPNPSPKRPIQPPASTHRTTNHRP 60

Query: 264 PPRAQGRL------AAAGSGGAVAASAAEAASSTSVMQHQLELQDRD 142
           P R   R       AAA +G  +  S  + A+   + + +L L  RD
Sbjct: 61  PRRRGERKEEREMEAAAAAGVQLGTSKPQIATQAEMSEARLPLPYRD 107

>ref|NP_295856.1| conserved hypothetical protein [Deinococcus radiodurans]
           gi|7471338|pir||B75310 conserved hypothetical protein -
           Deinococcus radiodurans  (strain R1)
           gi|6459930|gb|AAF11681.1|AE002048_1 conserved
           hypothetical protein [Deinococcus radiodurans]
          Length = 528

 Score = 46.2 bits (108), Expect = 3e-04
 Identities = 45/127 (35%), Positives = 56/127 (43%), Gaps = 11/127 (8%)
 Frame = -1

Query: 525 PRFWARPAPETSPRG----RR**ACRPSPAQCVCSQTPPRASWGWW--APGGR-SAPPAA 367
           PR   R  P T P      RR  A RPSP+     + P     GWW  A G R SAP   
Sbjct: 346 PRRGRRQRPVTRPSSHVTRRRRPATRPSPS----GRRPSTPVTGWWPSATGCRLSAPRRC 401

Query: 366 PGST-RCRR---CWRPSPQCRAPETETAGPTRSPGQSPPPRAQGRLAAAGSGGAVAASAA 199
             +T RCR    C R SP+C          TR   ++ P RA+   A+  +  A AA++A
Sbjct: 402 RRATKRCRTATGCGRTSPRCGPSSGSCRAATRRSPRTSPRRARASRASRPTIPAPAANSA 461

Query: 198 EAASSTS 178
            AA   S
Sbjct: 462 SAAPPNS 468

>pir||A45195 adenylylcyclase type V-alpha - dog gi|290082|gb|AAA30827.1|
           adenylyl cyclase
          Length = 596

 Score = 45.4 bits (106), Expect = 4e-04
 Identities = 45/138 (32%), Positives = 53/138 (37%)
 Frame = +2

Query: 113 SSLQALPSCRSLSCNSS*CCITLVLDAASAAEAATAPPEPAAASLPCARGGGDCPGERVG 292
           SS  A PS  + +        T    A+++A A   P   AAA+   A  GG     R G
Sbjct: 3   SSSSAWPSAGAATTTPRWAATTPWPGASASASAPGRPGRSAAATTAGAAAGGGGGARRAG 62

Query: 293 PAVSVSGARHCGEGRQQRRQRVEPGAAGGADRPPGAHQPQDARGGVCEHTH*AGDGRHAH 472
            A      R CG     RR+R   G  GG   P G   P  A G         G G    
Sbjct: 63  AA----PGRPCG-----RRRRPGGGGRGGGAPPLGGAGPGRAAGPGPRRARARGRG---- 109

Query: 473 HRRPRGDVSGAGRAQKRG 526
            RRPRG   GAGR +  G
Sbjct: 110 -RRPRGRPRGAGRRRPAG 126

>pir||A42904 adenylylcyclase type V - dog
          Length = 1184

 Score = 45.4 bits (106), Expect = 4e-04
 Identities = 45/138 (32%), Positives = 53/138 (37%)
 Frame = +2

Query: 113 SSLQALPSCRSLSCNSS*CCITLVLDAASAAEAATAPPEPAAASLPCARGGGDCPGERVG 292
           SS  A PS  + +        T    A+++A A   P   AAA+   A  GG     R G
Sbjct: 3   SSSSAWPSAGAATTTPRWAATTPWPGASASASAPGRPGRSAAATTAGAAAGGGGGARRAG 62

Query: 293 PAVSVSGARHCGEGRQQRRQRVEPGAAGGADRPPGAHQPQDARGGVCEHTH*AGDGRHAH 472
            A      R CG     RR+R   G  GG   P G   P  A G         G G    
Sbjct: 63  AA----PGRPCG-----RRRRPGGGGRGGGAPPLGGAGPGRAAGPGPRRARARGRG---- 109

Query: 473 HRRPRGDVSGAGRAQKRG 526
            RRPRG   GAGR +  G
Sbjct: 110 -RRPRGRPRGAGRRRPAG 126

>gb|AAC44888.1| unknown [Nannocystis exedens]
          Length = 290

 Score = 45.1 bits (105), Expect = 6e-04
 Identities = 39/117 (33%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
 Frame = -1

Query: 525 PRFWARPAPETSPRGRR**ACRPSPAQCV---CSQTPPRASWGWWAPGGRSAPPAAPGST 355
           P  W  P+   S   RR      SP+  V   CS+TPP  +W   +P  RS  P +P S+
Sbjct: 21  PYAWRSPSTSPSSASRR-----SSPSSAVRWPCSRTPP--TWSATSPPSRS--PCSPPSS 71

Query: 354 RCRRCWRPSPQCRAPETETAGPTRSPGQSPPPRAQGRLAAAGSGGAVAASAAEAASS 184
           RC R       CR   T +  P R   +SP P +    A + S     ASAA   +S
Sbjct: 72  RCVR------PCRVAPTGSPAP-RPSARSPTPCSSRSRAPSSSTARSPASAAATPTS 121



EST assemble image


clone accession position
1 CL58h09_r AV396233 1 531
2 HCL005c05_r AV639804 1 232
3 HCL057g09_r AV642779 1 523
4 HCL055b08_r AV642637 1 479
5 LCL045a08_r AV628645 3 468
6 LCL100d05_r AV631823 5 463
7 LCL079b09_r AV630460 18 179
8 LCL046e10_r AV628748 19 469




Chlamydomonas reinhardtii
Kazusa DNA Research Institute