Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000725A_C01 KCC000725A_c01
(576 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_641824.1| conserved hypothetical protein [Xanthomonas axo... 36 0.33
ref|NP_610316.2| CG1399-PB [Drosophila melanogaster] gi|21645603... 33 2.8
ref|ZP_00058302.1| COG0119: Isopropylmalate/homocitrate/citramal... 33 3.7
ref|NP_042369.1| RNA polymerase beta chain [Pinus thunbergii] gi... 32 6.3
ref|NP_859440.1| hypothetical conserved protein [Leishmania majo... 32 8.2
>ref|NP_641824.1| conserved hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306] gi|21107666|gb|AAM36360.1| conserved
hypothetical protein [Xanthomonas axonopodis pv. citri
str. 306]
Length = 387
Score = 36.2 bits (82), Expect = 0.33
Identities = 23/61 (37%), Positives = 27/61 (43%)
Frame = +1
Query: 277 CLRWMRRAPSAVAYNRVKAVVRCS*WACNLLLRLTGQGLQLKRSYLVYAVHGNIRMGRGR 456
C R RR P NRV AV C LLLRL G Q + HG +G+GR
Sbjct: 286 CSRNARRRPDQTGANRVPAVRPCRSGVLALLLRLGVHGFQRDHAGNAGGCHGATMVGKGR 345
Query: 457 Q 459
+
Sbjct: 346 R 346
>ref|NP_610316.2| CG1399-PB [Drosophila melanogaster] gi|21645603|gb|AAF59205.2|
CG1399-PB [Drosophila melanogaster]
Length = 1399
Score = 33.1 bits (74), Expect = 2.8
Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 13/69 (18%)
Frame = +1
Query: 358 CNLLLRLTGQGLQLKRSYLVYAVHG-------------NIRMGRGRQAHGANSIVDDAPR 498
CN L R TGQG +L+ +++ + H ++ G A ++ DA
Sbjct: 638 CNGLKRATGQGFRLQHGFMLSSTHQLVDKLVAETQDTISLAKGGSESASAVQRLITDAEN 697
Query: 499 CKQYLDGLR 525
CKQ + L+
Sbjct: 698 CKQLMPKLQ 706
>ref|ZP_00058302.1| COG0119: Isopropylmalate/homocitrate/citramalate synthases
[Thermobifida fusca]
Length = 767
Score = 32.7 bits (73), Expect = 3.7
Identities = 15/30 (50%), Positives = 16/30 (53%)
Frame = +1
Query: 193 SSLVITAPRPCG*RPLTLWSHSCCVRFMCL 282
SSL + APRP L W SCCV CL
Sbjct: 134 SSLTLRAPRPTSLSSLLTWPLSCCVSCSCL 163
>ref|NP_042369.1| RNA polymerase beta chain [Pinus thunbergii]
gi|1173150|sp|P41607|RPOB_PINTH DNA-directed RNA
polymerase beta chain gi|7434720|pir||T07448 probable
DNA-directed RNA polymerase (EC 2.7.7.6) beta chain -
Japanese black pine chloroplast
gi|1262609|dbj|BAA04326.1| RNA polymerase beta subunit
[Pinus thunbergii]
Length = 1075
Score = 32.0 bits (71), Expect = 6.3
Identities = 16/36 (44%), Positives = 22/36 (60%)
Frame = +1
Query: 103 ERGRGKRER*LWSRESLQVHFYNQLM*CASSSLVIT 210
++GR +RE LWSRE + FY +L C S LV +
Sbjct: 211 KKGRWEREEYLWSREKAILEFYKKLY-CISGDLVFS 245
>ref|NP_859440.1| hypothetical conserved protein [Leishmania major]
gi|21629304|gb|AAM68981.1|AC125735_11 hypothetical
conserved protein [Leishmania major]
Length = 269
Score = 31.6 bits (70), Expect = 8.2
Identities = 20/52 (38%), Positives = 23/52 (43%)
Frame = -1
Query: 237 RPLPTRPRCRND*AARRTSHQLVIKVHLKTLSGPQLTLSFASASLRPPRGRC 82
R LP R CR RT H LS P+L LS A+ + PP RC
Sbjct: 31 RCLPLRALCRRPNNVPRTLTHTSKHPHPLLLSHPRLPLSHAARTRAPPPSRC 82
Database: nr
Posted date: Oct 14, 2003 12:26 AM
Number of letters in database: 498,525,298
Number of sequences in database: 1,537,769
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 584,026,555
Number of Sequences: 1537769
Number of extensions: 13279924
Number of successful extensions: 38903
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 37222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38852
length of database: 498,525,298
effective HSP length: 117
effective length of database: 318,606,325
effective search space used: 23576868050
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
