KCC000720A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000720A_C01 KCC000720A_c01
ccactgCATTATTATACACCCGTTAGCAACATGCTGGCTTAGGCAAATGAAAAGGCATTT
CTTGGCTCTTACTGTCTAGGAGGCGAGCTCTCTACGCTTTCCTATCAGTCTTGTGTTAGT
TAACTACCATGGACTCGGCCGCGTTCCCGTCAGCGGACGAGCAGCAGCGGATACTGCAAG
ATGCTAGCACAGTCATTAAGCGGAATGCATTCCACATGCGTAAAGCAATCGAGGAGGACA
ACATGCGCGACTCGCTGAAGCACGCGGCGGCCATGCTGGGCGAGCTGCGCACGTCGCAGC
TGCAGCCGCAGAAATACTACGAGCTGTACATGCTGGCGTTCGACCAGCTGTCGTACCTTG
AGTCGTTCTTCGCTGACGAGCGCGGCAAGGGCCGGGCCTACTCGGAGCTGTACGAGCTGG
TGCAGCACGCCGGCAACGTGCTGCCACGCCTTTACCTGATGGTTGCTGTGGGCTGCCTGT
ACATCAAGAGCCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000720A_C01 KCC000720A_c01
         (493 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_190699.2| vacuolar sorting protein 35 homolog [Arabidopsi...   136  2e-31
emb|CAB66822.1| hypothetical protein [Homo sapiens]                   133  1e-30
gb|AAF89953.1|AF175265_1 vacuolar sorting protein 35 [Homo sapiens]   132  3e-30
dbj|BAA91790.1| unnamed protein product [Homo sapiens]                132  3e-30
gb|AAH10362.1| Vacuolar protein sorting 35 [Homo sapiens]             132  3e-30

>ref|NP_190699.2| vacuolar sorting protein 35 homolog [Arabidopsis thaliana]
          Length = 783

 Score =  136 bits (342), Expect = 2e-31
 Identities = 63/113 (55%), Positives = 88/113 (77%)
 Frame = +3

Query: 153 ADEQQRILQDASTVIKRNAFHMRKAIEEDNMRDSLKHAAAMLGELRTSQLQPQKYYELYM 332
           AD+ ++ L  A   +K+NAF+M++AI+ +N++D+LK +A ML ELRTS+L P KYYELYM
Sbjct: 3   ADDDEKWLAAAIAAVKQNAFYMQRAIDSNNLKDALKFSAQMLSELRTSKLSPHKYYELYM 62

Query: 333 LAFDQLSYLESFFADERGKGRAYSELYELVQHAGNVLPRLYLMVAVGCLYIKS 491
             F++L  LE FF +E G+G + +ELYELVQHAGN+LPRLYL+  +G +YIKS
Sbjct: 63  RVFNELGTLEIFFKEETGRGCSIAELYELVQHAGNILPRLYLLCTIGSVYIKS 115

>emb|CAB66822.1| hypothetical protein [Homo sapiens]
          Length = 796

 Score =  133 bits (334), Expect = 1e-30
 Identities = 59/112 (52%), Positives = 85/112 (75%)
 Frame = +3

Query: 156 DEQQRILQDASTVIKRNAFHMRKAIEEDNMRDSLKHAAAMLGELRTSQLQPQKYYELYML 335
           DEQ+++L +A   +K  +F M++ ++++ + DSLKHA+ MLGELRTS L P+ YYELYM 
Sbjct: 10  DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDSLKHASNMLGELRTSMLSPKSYYELYMA 69

Query: 336 AFDQLSYLESFFADERGKGRAYSELYELVQHAGNVLPRLYLMVAVGCLYIKS 491
             D+L YLE +  DE  KGR  ++LYELVQ+AGN++PRLYL++ VG +Y+KS
Sbjct: 70  ISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKS 121

>gb|AAF89953.1|AF175265_1 vacuolar sorting protein 35 [Homo sapiens]
          Length = 796

 Score =  132 bits (331), Expect = 3e-30
 Identities = 58/112 (51%), Positives = 85/112 (75%)
 Frame = +3

Query: 156 DEQQRILQDASTVIKRNAFHMRKAIEEDNMRDSLKHAAAMLGELRTSQLQPQKYYELYML 335
           DEQ+++L +A   +K  +F M++ ++++ + D+LKHA+ MLGELRTS L P+ YYELYM 
Sbjct: 10  DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMA 69

Query: 336 AFDQLSYLESFFADERGKGRAYSELYELVQHAGNVLPRLYLMVAVGCLYIKS 491
             D+L YLE +  DE  KGR  ++LYELVQ+AGN++PRLYL++ VG +Y+KS
Sbjct: 70  ISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKS 121

>dbj|BAA91790.1| unnamed protein product [Homo sapiens]
          Length = 796

 Score =  132 bits (331), Expect = 3e-30
 Identities = 58/112 (51%), Positives = 85/112 (75%)
 Frame = +3

Query: 156 DEQQRILQDASTVIKRNAFHMRKAIEEDNMRDSLKHAAAMLGELRTSQLQPQKYYELYML 335
           DEQ+++L +A   +K  +F M++ ++++ + D+LKHA+ MLGELRTS L P+ YYELYM 
Sbjct: 10  DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMA 69

Query: 336 AFDQLSYLESFFADERGKGRAYSELYELVQHAGNVLPRLYLMVAVGCLYIKS 491
             D+L YLE +  DE  KGR  ++LYELVQ+AGN++PRLYL++ VG +Y+KS
Sbjct: 70  ISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKS 121

>gb|AAH10362.1| Vacuolar protein sorting 35 [Homo sapiens]
          Length = 796

 Score =  132 bits (331), Expect = 3e-30
 Identities = 58/112 (51%), Positives = 85/112 (75%)
 Frame = +3

Query: 156 DEQQRILQDASTVIKRNAFHMRKAIEEDNMRDSLKHAAAMLGELRTSQLQPQKYYELYML 335
           DEQ+++L +A   +K  +F M++ ++++ + D+LKHA+ MLGELRTS L P+ YYELYM 
Sbjct: 10  DEQEKLLDEAIQAVKVQSFQMKRCLDKNKLMDALKHASNMLGELRTSMLSPKSYYELYMA 69

Query: 336 AFDQLSYLESFFADERGKGRAYSELYELVQHAGNVLPRLYLMVAVGCLYIKS 491
             D+L YLE +  DE  KGR  ++LYELVQ+AGN++PRLYL++ VG +Y+KS
Sbjct: 70  ISDELHYLEVYLTDEFAKGRKVADLYELVQYAGNIIPRLYLLITVGVVYVKS 121



EST assemble image


clone accession position
1 LCL050d01_r AV629010 1 292
2 HCL094g10_r AV644863 5 376
3 HCL057e11_r AV642767 7 472
4 CL57h02_r AV396302 19 490
5 MXL039a11_r BP095264 34 493
6 HCL024d04_r AV640901 83 492




Chlamydomonas reinhardtii
Kazusa DNA Research Institute