Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000715A_C02 KCC000715A_c02
(1427 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB64415.1| light-harvesting chlorophyll-a/b binding protein... 458 e-127
gb|AAP79139.1| chlorophyll a/b-binding protein CP29 [Bigelowiell... 243 8e-63
gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [V... 214 5e-59
ref|NP_181539.1| light-harvesting chlorophyll a/b binding protei... 213 5e-59
gb|AAM65936.1| putative chlorophyll a/b binding protein [Arabido... 210 3e-58
>dbj|BAB64415.1| light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii] gi|15430568|dbj|BAB64419.1|
light-harvesting chlorophyll-a/b binding protein Lhcb4
[Chlamydomonas reinhardtii] gi|27542567|gb|AAO16494.1|
CP29-like protein [Chlamydomonas reinhardtii]
Length = 280
Score = 458 bits (1178), Expect = e-127
Identities = 244/284 (85%), Positives = 249/284 (86%), Gaps = 1/284 (0%)
Frame = +2
Query: 35 MVFKFPTPPGTQKKAGTTRLPSRP-PKATTKKVATSTGTRLGRLLATASTRADAPVAAEA 211
MVFKFPTPPGTQKKAGTT ++P PKATTKKVATSTGTR G + + DA +
Sbjct: 1 MVFKFPTPPGTQKKAGTTA--TKPAPKATTKKVATSTGTRSGGV-GYRKYQGDA-LWLPN 56
Query: 212 PPAPSGWMALCPATAASIPWGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVS 391
P P P GLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVS
Sbjct: 57 TTRPEWLDGSLPGDRGFDPLGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVS 116
Query: 392 SENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVELDGASYA 571
SENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVELDGASYA
Sbjct: 117 SENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVELDGASYA 176
Query: 572 GLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKT 751
GLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKT
Sbjct: 177 GLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKT 236
Query: 752 AEIKHARLAMVSFFGYGVQALSTGEGALGSLAKFADGLNNGKGL 883
AEIKHARLAMVSFFGYGVQALSTGEGALGSLAKFADGLNNGKGL
Sbjct: 237 AEIKHARLAMVSFFGYGVQALSTGEGALGSLAKFADGLNNGKGL 280
>gb|AAP79139.1| chlorophyll a/b-binding protein CP29 [Bigelowiella natans]
Length = 291
Score = 243 bits (619), Expect = 8e-63
Identities = 125/231 (54%), Positives = 157/231 (67%), Gaps = 15/231 (6%)
Frame = +2
Query: 200 AAEAPPAPS--------------GWM-ALCPATAASIPWGLSKPSEFVVIGVDENDQNAA 334
A +APP P GW+ P P GLSKP+E++ VD+ DQNAA
Sbjct: 58 ARKAPPPPKNNEDPLWLPNTERPGWLDGSLPGDRGFDPLGLSKPAEYLQFDVDQLDQNAA 117
Query: 335 KNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFRECELIHGRWAMLACLGALVAEAT 514
N G V DEV++EN L+PYS++FGL RFRECELIHGRWAMLA LGA+VAE +
Sbjct: 118 VNRAGRVIGQYDGGIDEVNTENSLSPYSDIFGLRRFRECELIHGRWAMLATLGAIVAELS 177
Query: 515 TGVSWVEAGKVELDGASYAGLSLPFSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGV 694
TGV W +AGKVELDGA Y LPF+++QL +EV+LVGGAE YRN+ET+ +KR YPGG
Sbjct: 178 TGVPWDQAGKVELDGARYLNFDLPFTVSQLTLLEVLLVGGAEIYRNTETDLDKRLYPGGT 237
Query: 695 FDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLA 847
FDPL ++ +E+ RL+ AEIKH RLAMV+ FG GVQA +TGEG + +L+
Sbjct: 238 FDPLGFTTKSDEQTMRLREAEIKHGRLAMVAAFGCGVQAFTTGEGLIENLS 288
Score = 47.0 bits (110), Expect = 8e-04
Identities = 20/27 (74%), Positives = 21/27 (77%)
Frame = +1
Query: 193 PCGCRSTTRPEWLDGSLPGDRGFDPLG 273
P +T RP WLDGSLPGDRGFDPLG
Sbjct: 71 PLWLPNTERPGWLDGSLPGDRGFDPLG 97
>gb|AAD27878.1|AF139466_1 chlorophyll a/b binding protein CP29 [Vigna radiata]
Length = 290
Score = 214 bits (545), Expect(2) = 5e-59
Identities = 118/198 (59%), Positives = 142/198 (71%), Gaps = 4/198 (2%)
Frame = +2
Query: 266 PWGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSS--ENRLAPYSEVFGLAR 439
P+GL KP+E++ +D DQN AKN G I+ T EV+ PYSEVFGL R
Sbjct: 79 PFGLGKPAEYLQFELDSLDQNLAKNEAG----IIIGTRTEVADVKSTPFQPYSEVFGLQR 134
Query: 440 FRECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIE 616
FRECELIHGRWAMLA LGAL E TGV+W +AGKVEL +G+SY G LPFSIT LIWIE
Sbjct: 135 FRECELIHGRWAMLATLGALSVEWLTGVTWQDAGKVELVEGSSYLGQPLPFSITTLIWIE 194
Query: 617 VILVGGAEFYRNSETNPEKRCYPGG-VFDPLKLASEDEERAFRLKTAEIKHARLAMVSFF 793
V+++G EF RN+E +PEKR YPGG FDPL LAS+ E++A L+ AEIKHARLAMV F
Sbjct: 195 VLVIGYIEFQRNAELDPEKRLYPGGSYFDPLGLASDPEKKA-TLQLAEIKHARLAMVGFL 253
Query: 794 GYGVQALSTGEGALGSLA 847
G+ VQA +TG+G L + A
Sbjct: 254 GFAVQAAATGKGPLNNWA 271
Score = 37.7 bits (86), Expect(2) = 5e-59
Identities = 15/18 (83%), Positives = 15/18 (83%)
Frame = +1
Query: 220 PEWLDGSLPGDRGFDPLG 273
PEWLDGSL GD GFDP G
Sbjct: 64 PEWLDGSLVGDYGFDPFG 81
>ref|NP_181539.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana] gi|25299025|pir||T52316 chlorophyll
a/b-binding protein CP29 [imported] - Arabidopsis
thaliana gi|4741956|gb|AAD28775.1|AF134128_1 Lhcb4:3
protein [Arabidopsis thaliana]
gi|4895259|gb|AAD32843.1|AC007658_2 putative chlorophyll
a/b binding protein [Arabidopsis thaliana]
gi|17979325|gb|AAL49888.1| putative chlorophyll a/b
binding protein [Arabidopsis thaliana]
gi|20465761|gb|AAM20369.1| putative chlorophyll a/b
binding protein [Arabidopsis thaliana]
Length = 276
Score = 213 bits (541), Expect(2) = 5e-59
Identities = 111/197 (56%), Positives = 139/197 (70%), Gaps = 1/197 (0%)
Frame = +2
Query: 266 PWGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFR 445
P+GL KP+E++ D DQN AKN G + I+Q + + PY+EVFG+ RFR
Sbjct: 81 PFGLGKPAEYLQYDFDGLDQNLAKNVAGDIIGIIQESSE--IKPTPFQPYTEVFGIQRFR 138
Query: 446 ECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVI 622
ECELIHGRWAML LGA+ EA TG++W +AGKVEL +G+SY G LPFS+T LIWIEV+
Sbjct: 139 ECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVL 198
Query: 623 LVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYG 802
+VG EF RNSE +PEKR YPGG FDPL LA+ D E+ LK AEIKH+RLAMV+F +
Sbjct: 199 VVGYIEFQRNSELDPEKRIYPGGYFDPLGLAA-DPEKLDTLKLAEIKHSRLAMVAFLIFA 257
Query: 803 VQALSTGEGALGSLAKF 853
+QA TG+G + LA F
Sbjct: 258 LQAAFTGKGPVSFLATF 274
Score = 39.3 bits (90), Expect(2) = 5e-59
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 220 PEWLDGSLPGDRGFDPLG 273
PEWLDGS+ GDRGFDP G
Sbjct: 66 PEWLDGSMIGDRGFDPFG 83
>gb|AAM65936.1| putative chlorophyll a/b binding protein [Arabidopsis thaliana]
Length = 276
Score = 210 bits (534), Expect(2) = 3e-58
Identities = 110/197 (55%), Positives = 138/197 (69%), Gaps = 1/197 (0%)
Frame = +2
Query: 266 PWGLSKPSEFVVIGVDENDQNAAKNNKGSVEAIVQATPDEVSSENRLAPYSEVFGLARFR 445
P+GL KP+E++ DQN AKN G + I+Q + + PY+EVFG+ RFR
Sbjct: 81 PFGLGKPAEYLQYDXXGLDQNLAKNVAGDIIGIIQESSE--IKPTPFQPYTEVFGIQRFR 138
Query: 446 ECELIHGRWAMLACLGALVAEATTGVSWVEAGKVEL-DGASYAGLSLPFSITQLIWIEVI 622
ECELIHGRWAML LGA+ EA TG++W +AGKVEL +G+SY G LPFS+T LIWIEV+
Sbjct: 139 ECELIHGRWAMLGTLGAIAVEALTGIAWQDAGKVELVEGSSYLGQPLPFSLTTLIWIEVL 198
Query: 623 LVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYG 802
+VG EF RNSE +PEKR YPGG FDPL LA+ D E+ LK AEIKH+RLAMV+F +
Sbjct: 199 VVGYIEFQRNSELDPEKRIYPGGYFDPLGLAA-DPEKLDTLKLAEIKHSRLAMVAFLIFA 257
Query: 803 VQALSTGEGALGSLAKF 853
+QA TG+G + LA F
Sbjct: 258 LQAAFTGKGPVSFLATF 274
Score = 39.3 bits (90), Expect(2) = 3e-58
Identities = 15/18 (83%), Positives = 16/18 (88%)
Frame = +1
Query: 220 PEWLDGSLPGDRGFDPLG 273
PEWLDGS+ GDRGFDP G
Sbjct: 66 PEWLDGSMIGDRGFDPFG 83
