KCC000711A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000711A_C01 KCC000711A_c01
GACTGGCAGCGTGCGTGTGCGTGAGTACAACAAAGTGTGCGCGCATTCCGTATTCACGCG
TTGTGCGGGTGGCCTTGACCCCTGCCAGCGCGCTACCGACAGCTTGAAGCACGTGTGCTG
ACAGCAGGTGATGGGTTGAGTCTACCACAACAAGGGCTGGGACTGTCTTTGACTTGCTGA
CTGACGAGACGTTGACATGTACAGTGATCAGTAACCGTGTGCGGGGTAAGGCTAGTGAGC
CGACGTCTGGACATACGGCGTGGAGAGCCAGATAGGCTTAGGTTCAGGAATCCCCCGAGA
AGGGGCGGCCACCGGTGGAAAGGGCGGAAGCCGATGGAGAGGAGCACTTGCAAAGAGGGG
CAGTGCGCGTAGGCAAGTGAGGTAGGAATGAGGCTGAGGAGTGAGGGAGTTTGCTGGCCG
CACAGCCTGTTGCTCCGGCCTGGTGTGCCTTGGTCGCTGGCTGCAGTTTGGCAGCTTCGC
CTGAAAGAGAAAGAACATTCAGCGCTTTTCGCTGTTGCTGCTGTGGTAGGTGTGCGCCAA
CGTTGACGCCAGTTAGAGAAGCCAAGTTTGCTAATCGCGGGATGATGACACCGCCCGCAG
TTGAGGCAATTCCCTGCAGATGTTGACGCGCTGGCTATTGAGGAGTCTCTGTTATATAAA
CCCTTTC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000711A_C01 KCC000711A_c01
         (667 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|XP_341956.1| similar to DNA (cytosine-5)-methyltransferase 3...    41  0.018
gb|AAO39869.1| hypothetical protein [Oryza sativa (japonica cult...    38  0.16
ref|XP_133936.2| similar to DNA (cytosine-5-)-methyltransferase ...    38  0.16
ref|NP_608320.1| CG14218-PA [Drosophila melanogaster] gi|7293602...    37  0.27
emb|CAE45928.1| hypothetical protein [Homo sapiens]                    37  0.35

>ref|XP_341956.1| similar to DNA (cytosine-5)-methyltransferase 3A (Dnmt3a) (DNA
           methyltransferase MmuIIIA) (DNA MTase MmuIIIA)
           (M.MmuIIIA) [Rattus norvegicus]
          Length = 524

 Score = 40.8 bits (94), Expect = 0.018
 Identities = 24/69 (34%), Positives = 29/69 (41%)
 Frame = -2

Query: 453 PRHTRPEQQAVRPANSLTPQPHSYLTCLRALPLFASAPLHRLPPFPPVAAPSRGIPEPKP 274
           P H  PE+   +P  +  P+P          PL    P   LPPFPP      G P P P
Sbjct: 10  PHHQDPEKD--QPPKTAVPEPPP--------PLIPPVPAGNLPPFPPYF---EGAPFPHP 56

Query: 273 IWLSTPYVQ 247
           +WL   Y Q
Sbjct: 57  LWLRNTYQQ 65

>gb|AAO39869.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
          Length = 203

 Score = 37.7 bits (86), Expect = 0.16
 Identities = 21/50 (42%), Positives = 27/50 (54%)
 Frame = -3

Query: 383 TSLAYAHCPSLQVLLSIGFRPFHRWPPLLGGFLNLSLSGSPRRMSRRRLT 234
           T++AY        LL IG  P  RWPP   G  N+  +  P R++RRRLT
Sbjct: 61  TAVAYG-----DYLLGIGASPSRRWPPAAYGVENVGNNTVPTRVNRRRLT 105

>ref|XP_133936.2| similar to DNA (cytosine-5-)-methyltransferase 3 alpha [Homo
           sapiens] [Mus musculus]
          Length = 600

 Score = 37.7 bits (86), Expect = 0.16
 Identities = 23/69 (33%), Positives = 28/69 (40%)
 Frame = -2

Query: 453 PRHTRPEQQAVRPANSLTPQPHSYLTCLRALPLFASAPLHRLPPFPPVAAPSRGIPEPKP 274
           P H  PE+   +P  +   +P          PL    P   LPPFPP      G P P P
Sbjct: 87  PHHKDPEKD--QPPKTAVSEPPP--------PLIPPVPAGNLPPFPPYF---EGAPFPHP 133

Query: 273 IWLSTPYVQ 247
           +WL   Y Q
Sbjct: 134 LWLRNTYQQ 142

>ref|NP_608320.1| CG14218-PA [Drosophila melanogaster] gi|7293602|gb|AAF48974.1|
           CG14218-PA [Drosophila melanogaster]
          Length = 348

 Score = 37.0 bits (84), Expect = 0.27
 Identities = 24/72 (33%), Positives = 31/72 (42%), Gaps = 3/72 (4%)
 Frame = -2

Query: 480 AKLPNCSQRPRHTRPEQQAVRPANSLTPQP---HSYLTCLRALPLFASAPLHRLPPFPPV 310
           A  P  +Q PR  RP+ +      +L P P   + Y     A P   + P    PP PP 
Sbjct: 121 APAPPTTQPPRRVRPQVRPRPRPTTLAPPPPPNYDYDYDYDAQPAAPAEPPPPPPPPPPP 180

Query: 309 AAPSRGIPEPKP 274
            AP R  P P+P
Sbjct: 181 TAPPRPRPRPRP 192

>emb|CAE45928.1| hypothetical protein [Homo sapiens]
          Length = 510

 Score = 36.6 bits (83), Expect = 0.35
 Identities = 37/119 (31%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
 Frame = -2

Query: 483 QAKLPNCSQRPRHTRPEQQAVRPANSLTPQPHSYLTCL-----RALPLFASAPLHRLPPF 319
           Q+ L N    P    P Q +  P  +  P P +  T L     R  PL +S+P    PP 
Sbjct: 195 QSSLHNRGSPPVPGGPRQPS--PGPTPPPFPGNRGTALGGGSIRQSPLSSSSPFSNRPPL 252

Query: 318 PPVAAPSRGI----PEPKPIWLSTPYVQTSAH*PYPAHGY*SLYMSTSRQSASQRQSQP 154
           PP   PSR +    P P P   + P +   A  P P         ST R SAS +   P
Sbjct: 253 PP--TPSRALDDKPPPPPPPVGNRPSIHREAVPPPPPQNNKPPVPSTPRPSASSQAPPP 309



EST assemble image


clone accession position
1 LC030c07_r AV621036 1 496
2 CL57a05_r AV396282 171 667




Chlamydomonas reinhardtii
Kazusa DNA Research Institute