Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000710A_C01 KCC000710A_c01
(577 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_499905.1| COLlagen structural gene (col-101) [Caenorhabdi... 40 0.018
ref|ZP_00033239.1| COG1643: HrpA-like helicases [Burkholderia fu... 40 0.023
pir||S20819 collagen alpha 3(IX) chain precursor - chicken gi|63... 40 0.023
sp|P32017|CA39_CHICK Collagen alpha 3(IX) chain precursor gi|211... 40 0.023
ref|NP_739264.1| hypothetical protein [Corynebacterium efficiens... 40 0.030
>ref|NP_499905.1| COLlagen structural gene (col-101) [Caenorhabditis elegans]
gi|7505126|pir||T32985 hypothetical protein K02D7.3 -
Caenorhabditis elegans gi|2854193|gb|AAC02608.1|
Hypothetical protein K02D7.3 [Caenorhabditis elegans]
Length = 314
Score = 40.4 bits (93), Expect = 0.018
Identities = 21/43 (48%), Positives = 24/43 (54%), Gaps = 1/43 (2%)
Frame = -2
Query: 510 PASDSGAPGAAGGSGATGVPGG-GSDGSRCAISTSPFTATAPG 385
P D+GAPGA G G+ G PG G DG + A P TAPG
Sbjct: 271 PQGDAGAPGAPGQPGSAGQPGNDGGDGGQGACDHCPPPRTAPG 313
>ref|ZP_00033239.1| COG1643: HrpA-like helicases [Burkholderia fungorum]
Length = 1020
Score = 40.0 bits (92), Expect = 0.023
Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 18/113 (15%)
Frame = +2
Query: 263 APMASPGPIGESEEQNLKVLDQNG-----QPLKAATG-------------NNGAHADVLP 388
AP A GE++ +N + ++N +P +AA + GA A P
Sbjct: 16 APAADQAKAGEAKRRNAQDAERNAPQTAREPRRAAENAPASAQRNNPRRESGGAPAKKSP 75
Query: 389 GAVAVKGDVEMAQREPSLPPPGTPVAPEPPAAPGAPESDAGETYISVTYFDIL 547
GA GD E PP +P +P PP AP AP +TY + L
Sbjct: 76 GA----GDAERGANRREPQPPQSPQSPRPPRAPRAPRLVEPNPIPPITYPEAL 124
>pir||S20819 collagen alpha 3(IX) chain precursor - chicken
gi|63317|emb|CAA45967.1| collagen-alpha-3 type IX
[Gallus gallus]
Length = 675
Score = 40.0 bits (92), Expect = 0.023
Identities = 30/89 (33%), Positives = 41/89 (45%), Gaps = 2/89 (2%)
Frame = +2
Query: 248 FRGRIAPMASPGPIGESEEQNLKVLDQNGQPLKAATGNNGAHADVLPGAVAV-KGDVEMA 424
+RG + PGP G++ E+ K GQ + G+ G LPG + K + A
Sbjct: 578 YRGPTGELGDPGPRGDTGEKGDK--GPAGQGIDGPDGDQGPQG--LPGVPGISKNGRDGA 633
Query: 425 QREPSLP-PPGTPVAPEPPAAPGAPESDA 508
Q EP LP PGTP A PG ++ A
Sbjct: 634 QGEPGLPGDPGTPGAVGAQGTPGICDTSA 662
>sp|P32017|CA39_CHICK Collagen alpha 3(IX) chain precursor gi|211041|gb|AAB59960.1|
alpha-3 type IX collagen
Length = 675
Score = 40.0 bits (92), Expect = 0.023
Identities = 30/89 (33%), Positives = 41/89 (45%), Gaps = 2/89 (2%)
Frame = +2
Query: 248 FRGRIAPMASPGPIGESEEQNLKVLDQNGQPLKAATGNNGAHADVLPGAVAV-KGDVEMA 424
+RG + PGP G++ E+ K GQ + G+ G LPG + K + A
Sbjct: 578 YRGPTGELGDPGPRGDTGEKGDK--GPAGQGIDGPDGDQGPQG--LPGVPGISKNGRDGA 633
Query: 425 QREPSLP-PPGTPVAPEPPAAPGAPESDA 508
Q EP LP PGTP A PG ++ A
Sbjct: 634 QGEPGLPGDPGTPGAVGAQGTPGICDTSA 662
>ref|NP_739264.1| hypothetical protein [Corynebacterium efficiens YS-314]
gi|23494498|dbj|BAC19464.1| hypothetical protein
[Corynebacterium efficiens YS-314]
Length = 609
Score = 39.7 bits (91), Expect = 0.030
Identities = 25/51 (49%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = +2
Query: 386 PGAVAVKGDVEMAQREPSLP---PPGTPVAPEPPAAPGAPESDAGETYISV 529
PGA++ G A P LP PPG P AP PAAPGAP S A SV
Sbjct: 229 PGAISAPG----AAPPPGLPAPGPPGAPGAPGIPAAPGAPGSAAAPAPTSV 275