KCC000710A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000710A_C01 KCC000710A_c01
ccaccaccacggcgcgcgcagagcgctgaagtgtttAGCAACAGACTTTCCACACTCCAA
TAGAGCGCCAGGCCCCGAGGCCCAGACGGACAGGTTTTTTGTGTTGGGGGTTCTACGTCG
CGCTCGTTCTGGGCACACAGTACAGCAGTCAGGTCGCTAAGGCATTGAGGACGCATAAGT
AACCTGGAAAGCTCACTTAGATTAGCAAATTCCACTGCCGCCCGCGTGCGGCGAGTGAAT
GTCTTCTTTTCGTGGCCGTATCGCACCGATGGCGAGTCCAGGCCCGATTGGAGAGTCTGA
AGAGCAAAATCTAAAGGTGCTGGACCAGAACGGCCAGCCGTTGAAGGCAGCGACTGGCAA
CAATGGAGCGCATGCGGACGTTCTGCCGGGCGCTGTAGCAGTGAAAGGCGATGTTGAGAT
GGCGCAACGTGAGCCATCACTTCCGCCCCCGGGCACGCCGGTAGCGCCGGAGCCGCCTGC
GGCACCGGGTGCGCCCGAATCGGACGCGGGTGAGACCTACATCTCGGTCACCTACTTTGA
CATCCTCAAGCACTTCAGCCTCATGGGCTACATCGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000710A_C01 KCC000710A_c01
         (577 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_499905.1| COLlagen structural gene (col-101) [Caenorhabdi...    40  0.018
ref|ZP_00033239.1| COG1643: HrpA-like helicases [Burkholderia fu...    40  0.023
pir||S20819 collagen alpha 3(IX) chain precursor - chicken gi|63...    40  0.023
sp|P32017|CA39_CHICK Collagen alpha 3(IX) chain precursor gi|211...    40  0.023
ref|NP_739264.1| hypothetical protein [Corynebacterium efficiens...    40  0.030

>ref|NP_499905.1| COLlagen structural gene (col-101) [Caenorhabditis elegans]
           gi|7505126|pir||T32985 hypothetical protein K02D7.3 -
           Caenorhabditis elegans gi|2854193|gb|AAC02608.1|
           Hypothetical protein K02D7.3 [Caenorhabditis elegans]
          Length = 314

 Score = 40.4 bits (93), Expect = 0.018
 Identities = 21/43 (48%), Positives = 24/43 (54%), Gaps = 1/43 (2%)
 Frame = -2

Query: 510 PASDSGAPGAAGGSGATGVPGG-GSDGSRCAISTSPFTATAPG 385
           P  D+GAPGA G  G+ G PG  G DG + A    P   TAPG
Sbjct: 271 PQGDAGAPGAPGQPGSAGQPGNDGGDGGQGACDHCPPPRTAPG 313

>ref|ZP_00033239.1| COG1643: HrpA-like helicases [Burkholderia fungorum]
          Length = 1020

 Score = 40.0 bits (92), Expect = 0.023
 Identities = 32/113 (28%), Positives = 45/113 (39%), Gaps = 18/113 (15%)
 Frame = +2

Query: 263 APMASPGPIGESEEQNLKVLDQNG-----QPLKAATG-------------NNGAHADVLP 388
           AP A     GE++ +N +  ++N      +P +AA               + GA A   P
Sbjct: 16  APAADQAKAGEAKRRNAQDAERNAPQTAREPRRAAENAPASAQRNNPRRESGGAPAKKSP 75

Query: 389 GAVAVKGDVEMAQREPSLPPPGTPVAPEPPAAPGAPESDAGETYISVTYFDIL 547
           GA    GD E         PP +P +P PP AP AP          +TY + L
Sbjct: 76  GA----GDAERGANRREPQPPQSPQSPRPPRAPRAPRLVEPNPIPPITYPEAL 124

>pir||S20819 collagen alpha 3(IX) chain precursor - chicken
           gi|63317|emb|CAA45967.1| collagen-alpha-3 type IX
           [Gallus gallus]
          Length = 675

 Score = 40.0 bits (92), Expect = 0.023
 Identities = 30/89 (33%), Positives = 41/89 (45%), Gaps = 2/89 (2%)
 Frame = +2

Query: 248 FRGRIAPMASPGPIGESEEQNLKVLDQNGQPLKAATGNNGAHADVLPGAVAV-KGDVEMA 424
           +RG    +  PGP G++ E+  K     GQ +    G+ G     LPG   + K   + A
Sbjct: 578 YRGPTGELGDPGPRGDTGEKGDK--GPAGQGIDGPDGDQGPQG--LPGVPGISKNGRDGA 633

Query: 425 QREPSLP-PPGTPVAPEPPAAPGAPESDA 508
           Q EP LP  PGTP A      PG  ++ A
Sbjct: 634 QGEPGLPGDPGTPGAVGAQGTPGICDTSA 662

>sp|P32017|CA39_CHICK Collagen alpha 3(IX) chain precursor gi|211041|gb|AAB59960.1|
           alpha-3 type IX collagen
          Length = 675

 Score = 40.0 bits (92), Expect = 0.023
 Identities = 30/89 (33%), Positives = 41/89 (45%), Gaps = 2/89 (2%)
 Frame = +2

Query: 248 FRGRIAPMASPGPIGESEEQNLKVLDQNGQPLKAATGNNGAHADVLPGAVAV-KGDVEMA 424
           +RG    +  PGP G++ E+  K     GQ +    G+ G     LPG   + K   + A
Sbjct: 578 YRGPTGELGDPGPRGDTGEKGDK--GPAGQGIDGPDGDQGPQG--LPGVPGISKNGRDGA 633

Query: 425 QREPSLP-PPGTPVAPEPPAAPGAPESDA 508
           Q EP LP  PGTP A      PG  ++ A
Sbjct: 634 QGEPGLPGDPGTPGAVGAQGTPGICDTSA 662

>ref|NP_739264.1| hypothetical protein [Corynebacterium efficiens YS-314]
           gi|23494498|dbj|BAC19464.1| hypothetical protein
           [Corynebacterium efficiens YS-314]
          Length = 609

 Score = 39.7 bits (91), Expect = 0.030
 Identities = 25/51 (49%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
 Frame = +2

Query: 386 PGAVAVKGDVEMAQREPSLP---PPGTPVAPEPPAAPGAPESDAGETYISV 529
           PGA++  G    A   P LP   PPG P AP  PAAPGAP S A     SV
Sbjct: 229 PGAISAPG----AAPPPGLPAPGPPGAPGAPGIPAAPGAPGSAAAPAPTSV 275



EST assemble image


clone accession position
1 LCL085g09_r AV630888 1 249
2 CL56h06_r AV396117 37 484
3 MXL015a07_r BP093876 63 420
4 MXL057f10_r BP096372 69 471
5 LCL034h03_r AV627981 188 444
6 LCL072e08_r AV630074 192 577




Chlamydomonas reinhardtii
Kazusa DNA Research Institute