KCC000703A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000703A_C01 KCC000703A_c01
agaccacatatcactatgtaccgctggcattaagtacagggcgcaaatggacagtgtgag
ttttctttcgagactgcttcCATAGCGCGCCCGTATCTCCCTGTGGTCAAGTCTCTCCCT
AATGCGTTGCTATCAGCGTGTACCCTGCACAGGTGCCAACGCGGCGCGATGGCGCCTCGA
CGTAGCCAGCGTGCGCAACTGCGGGAAGGCGGCAAGCTCGGACAGCGCGCGGTGCGGCTG
CTGCTGCCGATGCCGCGGGGGGCGCCGCGCGGCCGAGCGGCCTGCTGCTAGAGGTGGATG
GTGCAGTGATGGACATCGCTCATGGACGGACAACCGCGTGGCCTTCAAACGCGCCTATCA
CTCTATCGGTATGGACTGTGTGTCGTGGACGCCGCCCGTGTACAACGACCTGCTGGGCAT
CAGCGACGGCACAGGCGAGGGCCTGGTCACAGCCTACTACACCACAGTGGGCTGGCCAAT
GATGCTTGCCACGTCTGACCGCCCTGnGTTCGTGAAGAAGATCCACCAGCTCAAGGAGAA
GGAGTTGGTCAAGCTGCTCCGAAAGGACGAGGTGCCGCTGCGGCAGGACGTCAAGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000703A_C01 KCC000703A_c01
         (597 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_199330.2| expressed protein [Arabidopsis thaliana]              76  3e-13
gb|AAK53865.1|AC016781_19 Putative hydrolase [Oryza sativa]            54  1e-06
gb|AAM63700.1| unknown [Arabidopsis thaliana]                          46  5e-04
ref|NP_566903.1| haloacid dehalogenase-like hydrolase family [Ar...    46  5e-04
pir||T06700 hypothetical protein T29H11.60 - Arabidopsis thalian...    46  5e-04

>ref|NP_199330.2| expressed protein [Arabidopsis thaliana]
          Length = 372

 Score = 76.3 bits (186), Expect = 3e-13
 Identities = 33/92 (35%), Positives = 53/92 (56%)
 Frame = +2

Query: 320 SWTDNRVAFKRAYHSIGMDCVSWTPPVYNDLLGISDGTGEGLVTAYYTTVGWPMMLATSD 499
           +W+ NR AF  A+  +G+DC +W  PVY+DLL       E ++  Y+  +GWP  L TS+
Sbjct: 92  TWSSNRQAFNVAFQKLGLDCANWPEPVYSDLLRKGAADEEKMLLLYFNQIGWPSSLPTSE 151

Query: 500 RPXFVKKIHQLKEKELVKLLRKDEVPLRQDVK 595
           +  FVK + + K+  + + L    +PLR  V+
Sbjct: 152 KASFVKSVLREKKNAMDEFLISKSLPLRSGVQ 183

>gb|AAK53865.1|AC016781_19 Putative hydrolase [Oryza sativa]
          Length = 383

 Score = 54.3 bits (129), Expect = 1e-06
 Identities = 49/167 (29%), Positives = 76/167 (45%), Gaps = 13/167 (7%)
 Frame = +2

Query: 134 QRVPCTGANAARW---RLDVASVRNCGKAASSDSARCGCCCRCRGGRRAAERPAARGGWC 304
           QR+P   A A+R    R   A +   G+   +++ R        GG  AA  PAA    C
Sbjct: 30  QRLPTRVAAASRTTTARSPAACLSVGGRRRGAEAVRASA-----GGAPAASLPAALLFDC 84

Query: 305 S--------DGHRSWTDNRVAFKRAYHSIGMDCVSWTPPVYNDLLGISDGTGEGLVTAYY 460
                    DGHR      ++F   +    +  VSW   +Y +LL I  G G+  +TAY+
Sbjct: 85  DGVLVDTEKDGHR------ISFNETFAERELG-VSWDVELYGELLKI--GGGKERMTAYF 135

Query: 461 TTVGWPMMLATSD--RPXFVKKIHQLKEKELVKLLRKDEVPLRQDVK 595
           + +GWP     +D  R  F+  +H+ K +  + L+ K  +PLR  V+
Sbjct: 136 SKMGWPAKAPKTDDERKEFIASLHKRKTELFMALIEKKLLPLRPGVQ 182

>gb|AAM63700.1| unknown [Arabidopsis thaliana]
          Length = 319

 Score = 45.8 bits (107), Expect = 5e-04
 Identities = 30/97 (30%), Positives = 50/97 (50%), Gaps = 2/97 (2%)
 Frame = +2

Query: 308 DGHRSWTDNRVAFKRAYHSIGMDCVSWTPPVYNDLLGISDGTGEGLVTAYYTTVGWPMML 487
           DGHR      ++F   +    ++ V+W   +Y +LL I  G G+  +TAY+  VGWP   
Sbjct: 93  DGHR------ISFNDTFKERDLN-VTWDVDLYGELLKI--GGGKERMTAYFNKVGWPEKA 143

Query: 488 A--TSDRPXFVKKIHQLKEKELVKLLRKDEVPLRQDV 592
               ++R  F+  +H+ K +  + L+ K  +PLR  V
Sbjct: 144 PKDEAERKEFIAGLHKQKTELFMVLIEKKLLPLRPGV 180

>ref|NP_566903.1| haloacid dehalogenase-like hydrolase family [Arabidopsis thaliana]
           gi|13877975|gb|AAK44065.1|AF370250_1 unknown protein
           [Arabidopsis thaliana] gi|17104703|gb|AAL34240.1|
           unknown protein [Arabidopsis thaliana]
           gi|26451286|dbj|BAC42744.1| unknown protein [Arabidopsis
           thaliana]
          Length = 319

 Score = 45.8 bits (107), Expect = 5e-04
 Identities = 30/97 (30%), Positives = 50/97 (50%), Gaps = 2/97 (2%)
 Frame = +2

Query: 308 DGHRSWTDNRVAFKRAYHSIGMDCVSWTPPVYNDLLGISDGTGEGLVTAYYTTVGWPMML 487
           DGHR      ++F   +    ++ V+W   +Y +LL I  G G+  +TAY+  VGWP   
Sbjct: 93  DGHR------ISFNDTFKERDLN-VTWDVDLYGELLKI--GGGKERMTAYFNKVGWPEKA 143

Query: 488 A--TSDRPXFVKKIHQLKEKELVKLLRKDEVPLRQDV 592
               ++R  F+  +H+ K +  + L+ K  +PLR  V
Sbjct: 144 PKDEAERKEFIAGLHKQKTELFMVLIEKKLLPLRPGV 180

>pir||T06700 hypothetical protein T29H11.60 - Arabidopsis thaliana
           gi|4678346|emb|CAB41156.1| putative protein [Arabidopsis
           thaliana]
          Length = 686

 Score = 45.8 bits (107), Expect = 5e-04
 Identities = 30/97 (30%), Positives = 50/97 (50%), Gaps = 2/97 (2%)
 Frame = +2

Query: 308 DGHRSWTDNRVAFKRAYHSIGMDCVSWTPPVYNDLLGISDGTGEGLVTAYYTTVGWPMML 487
           DGHR      ++F   +    ++ V+W   +Y +LL I  G G+  +TAY+  VGWP   
Sbjct: 93  DGHR------ISFNDTFKERDLN-VTWDVDLYGELLKI--GGGKERMTAYFNKVGWPEKA 143

Query: 488 A--TSDRPXFVKKIHQLKEKELVKLLRKDEVPLRQDV 592
               ++R  F+  +H+ K +  + L+ K  +PLR  V
Sbjct: 144 PKDEAERKEFIAGLHKQKTELFMVLIEKKLLPLRPGV 180



EST assemble image


clone accession position
1 CL56a11_r AV396122 1 392
2 LCL051g05_r AV629084 76 597




Chlamydomonas reinhardtii
Kazusa DNA Research Institute