KCC000700A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000700A_C01 KCC000700A_c01
cggagatgcaaCTTAACTAAGCGGGAACGTTTTTGCTTCAGCTCTAATAGCTGTTTCAAT
GCCACAGTTCTTTGACCATCGGCCTGTCGACAAGCGGCAAGAATGGGGAGCTTCTAAATA
TGAAAGAGCTGATAGGCAACTACTGATAAAATGTCTTCTCAATAGCAGAAGTTTAGGGGA
CTCCTTCTAAACTCTCCCGTCCAAGTGTGGCGTGACAGCACACTCAAATGGAGGCTCTCA
ACGAGAATGAGGCGATGCGGGTGCTGCAGGCGGCTGCGGTGCTCGACGCGAGGGTTGGGC
CCGGTGCCTCGGCGCCCACCGTACCTCTCCTGCCGTCATCCTACGAAGCATCGCCGGGCC
CCGGCGCCATACCTCCCGCTGCCAGCTCCGCTGCCCCCTCCGGCTCCTCTGCTTCTGCCT
CTGGAGGTGACGCCTGGAAGGACTTTGCGGAGACAGAGGATGGCGTTCGCAAGGGCGACT
TGGACACGTGGCTGGACGTGTT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000700A_C01 KCC000700A_c01
         (502 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAF71259.1|AF231707_1 vitelline envelope protein beta [Oncorh...    44  0.001
dbj|BAB39276.1| P0537A05.5 [Oryza sativa (japonica cultivar-grou...    43  0.002
dbj|BAC84845.1| cell wall protein-like [Oryza sativa (japonica c...    42  0.004
ref|NP_116403.1| T49 [Tupaia herpesvirus] gi|14210735|gb|AAK5709...    41  0.009
emb|CAD43427.1| SI:dZ173A8.1.2 (novel protein similar to human i...    40  0.012

>gb|AAF71259.1|AF231707_1 vitelline envelope protein beta [Oncorhynchus mykiss]
          Length = 524

 Score = 43.9 bits (102), Expect = 0.001
 Identities = 32/100 (32%), Positives = 45/100 (45%), Gaps = 3/100 (3%)
 Frame = -2

Query: 498 RPATCPSRPCERHPLSPQSPSRRHLQRQKQRSRRGQRSWQREVWRRGPAMLRRMTAGEVR 319
           +P   P RP +  P  P  P +R  Q  ++ ++  QR  Q + W   PA   +  A   +
Sbjct: 45  KPIQPPQRPAQP-PQWPVQPPQRPAQPPQRPAQPPQRPAQPQQW---PAQPPQRPAQPPQ 100

Query: 318 WA---PRHRAQPSRRAPQPPAAPASPHSR*EPPFECAVTP 208
           W    P+  AQP +R  QPP  PA P  R   P +  V P
Sbjct: 101 WPAQPPQRPAQPPQRPAQPPQRPAQPPQRPAQPPQWPVHP 140

>dbj|BAB39276.1| P0537A05.5 [Oryza sativa (japonica cultivar-group)]
           gi|22535698|dbj|BAC10871.1| B1135C02.8 [Oryza sativa
           (japonica cultivar-group)]
          Length = 278

 Score = 42.7 bits (99), Expect = 0.002
 Identities = 26/80 (32%), Positives = 35/80 (43%)
 Frame = -2

Query: 480 SRPCERHPLSPQSPSRRHLQRQKQRSRRGQRSWQREVWRRGPAMLRRMTAGEVRWAPRHR 301
           S PC R  LS   P R         SRR + SW+  +  R   ++RR  +      PR R
Sbjct: 126 SSPCSRCRLSSSPPRRSRSSSSSSSSRRSRSSWRSSL--RRAVLVRRPRSSSEPLQPRPR 183

Query: 300 AQPSRRAPQPPAAPASPHSR 241
            +P  R  +P A   SP S+
Sbjct: 184 LRPRLRVAKPRAGRVSPLSK 203

>dbj|BAC84845.1| cell wall protein-like [Oryza sativa (japonica cultivar-group)]
          Length = 450

 Score = 42.0 bits (97), Expect = 0.004
 Identities = 25/77 (32%), Positives = 34/77 (43%)
 Frame = -2

Query: 480 SRPCERHPLSPQSPSRRHLQRQKQRSRRGQRSWQREVWRRGPAMLRRMTAGEVRWAPRHR 301
           S PC R  LS   P R         SRR + SW+  +  R   ++RR  +      PR R
Sbjct: 306 SSPCSRCRLSSSPPRRSRSSSSSSSSRRSRSSWRSSL--RRAVLVRRPRSSSEPLQPRPR 363

Query: 300 AQPSRRAPQPPAAPASP 250
            +P  R  +P A  +SP
Sbjct: 364 VRPRLRVVKPRAGRSSP 380

 Score = 33.1 bits (74), Expect = 2.0
 Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 10/91 (10%)
 Frame = +1

Query: 211 RDSTLKWRLSTRMRRCGCCRRLRCSTRGLGPVPRRPPYLSCRHPTKHRRAPAP-----YL 375
           R S   WR S  +RR    RR R S+  L P PR  P L    P   R +P+P       
Sbjct: 332 RRSRSSWRSS--LRRAVLVRRPRSSSEPLQPRPRVRPRLRVVKPRAGRSSPSPKDRRRSR 389

Query: 376 PLP-----APLPPPAPLLLPLEVTPGRTLRR 453
           PL      A L PP P ++ +  TP R + R
Sbjct: 390 PLAVRLRCARLSPPRPFVVVVP-TPRRVVVR 419

>ref|NP_116403.1| T49 [Tupaia herpesvirus] gi|14210735|gb|AAK57098.1| T49 [Tupaia
           herpesvirus]
          Length = 588

 Score = 40.8 bits (94), Expect = 0.009
 Identities = 33/92 (35%), Positives = 40/92 (42%)
 Frame = -3

Query: 449 RKVLPGVTSRGRSRGAGGGSGAGSGRYGAGARRCFVG*RQERYGGRRGTGPNPRVEHRSR 270
           R VL G    G   G+GGG GAG+G  G+G             GG RG GP  R E R  
Sbjct: 301 RWVLDGGAGGGGGAGSGGGPGAGAGSGGSGGGAHHGA--HPATGGTRGGGPPARAEGR-- 356

Query: 269 LQHPHRLILVESLHLSVLSRHTWTGEFRRSPL 174
              P +++L     LSV  RH   G     P+
Sbjct: 357 ---PAKIVL---FALSVALRHGLIGSVIELPV 382

>emb|CAD43427.1| SI:dZ173A8.1.2 (novel protein similar to human intersectin (SH3
            domain protein, ITSN1)) [Danio rerio]
          Length = 1220

 Score = 40.4 bits (93), Expect = 0.012
 Identities = 32/98 (32%), Positives = 49/98 (49%), Gaps = 11/98 (11%)
 Frame = +3

Query: 231  EALNENEAMRVLQAAAV------LDARVGPGASAPTV-PLLPSSYEASPGPGAIPPAASS 389
            E + E+E    L+A+A       L + +   +S+ T  P+LP S E    P +I P +S+
Sbjct: 759  EKIPESEVPLSLRASAASSSAPKLGSHMSSASSSTTATPILPVSTE----PASIAPPSSA 814

Query: 390  AAPSG-SSASASGGDAWKDFAET---EDGVRKGDLDTW 491
              P+G +S+S+S    W DF+ T      V K D D W
Sbjct: 815  PPPTGPASSSSSASSNWADFSTTWPSNSAVEKQDSDGW 852



EST assemble image


clone accession position
1 CL56a04_r AV396083 1 407
2 CL72b11_r AV397039 12 502




Chlamydomonas reinhardtii
Kazusa DNA Research Institute