KCC000699A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000699A_C01 KCC000699A_c01
cgctataaaactcctatatgctgaccgtataactagtatgcaaGGAAAGCTGTGGAATTG
ACGGCCTGACTCGGTTCCGAATTGGTCCCGACGGAATTCCTCGACTGACGTGGACAAATA
CTGTAATTATGATTGTCAAGATGTACAATTAAGCTTGCGCTGCTTGGTTCGCTACTCAAG
CGTTGGGGCGAAGGACGTCCACCGACGTCAGCAAGCCACCGACGAACGCTCTGCAAACAA
GTGCCAAGAATCAGTCATGCCGTTGCTGCAGCTCCGGCCCACCGTGACCGGTAGGGCGGC
GTGGCCAGGGAGGCGCCCGCTCCTCCCCCCAATGTGCGCGGCGTTGCGGCACGTTTTCCG
CGATCGCTCTCTGGACTCGGGCGATGACACGTACGCCTCATTTGCGTCCCAGGAGCAGCA
GCTGCTGCCTGCGCAGGCGCCCCCGGCCGCCCAGGCGCAGCAGCCGGGGCGCCAAACAGA
CGCTATGCCGGTGCCCGGGGGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000699A_C01 KCC000699A_c01
         (503 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|ZP_00008198.1| COG0351: Hydroxymethylpyrimidine/phosphomethy...    40  0.013
gb|AAM74363.1|AC115686_30 Hypothetical protein [Oryza sativa (ja...    39  0.028
ref|NP_727910.1| shibire CG18102-PD [Drosophila melanogaster] gi...    39  0.036
pir||S17975 dynamin-like protein 3 - fruit fly (Drosophila sp.)        39  0.036
pir||S16130 dynamin 4 - fruit fly (Drosophila melanogaster) gi|7...    39  0.036

>ref|ZP_00008198.1| COG0351: Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase
           [Rhodobacter sphaeroides]
          Length = 477

 Score = 40.4 bits (93), Expect = 0.013
 Identities = 35/95 (36%), Positives = 40/95 (41%), Gaps = 24/95 (25%)
 Frame = -1

Query: 470 APAAAPGRPGA-PAQAAAAAPGTQMRRTCHRPSPE-----------------SDRGKRAA 345
           AP  AP R GA PA+AAA     + RR  HR  P+                 S RG+ AA
Sbjct: 40  APRQAPLRRGADPARAAAGGGARRPRRAAHRERPDRGGAGLGGGGASCGAGRSGRGRSAA 99

Query: 344 ------TPRTLGGGAGASLATPPYRSRWAGAAATA 258
                 +PR L  GAGAS    P   R  G  A A
Sbjct: 100 PDRARPSPRPLRRGAGASGGAAPRDRRLCGGGAGA 134

>gb|AAM74363.1|AC115686_30 Hypothetical protein [Oryza sativa (japonica cultivar-group)]
           gi|31431246|gb|AAP53054.1| hypothetical protein [Oryza
           sativa (japonica cultivar-group)]
          Length = 405

 Score = 39.3 bits (90), Expect = 0.028
 Identities = 31/99 (31%), Positives = 41/99 (41%), Gaps = 2/99 (2%)
 Frame = -1

Query: 443 GAPAQAAAAAPGTQMRRTCHRPSPESDRGKRAATPRTLGGGAGASLATPPYRSRWAGAAA 264
           GA  Q      G + RR C  PS        ++TP  + G A  +   PP  +  AGA  
Sbjct: 236 GARRQRPRPLSGARHRRPC--PSSTPQPVSASSTPELVAGAAATTTQDPPPSTPHAGARR 293

Query: 263 TA*LILGTCLQSVRRWLADVGG--RPSPQRLSSEPSSAS 153
              L     L +V   +   G   RP P R SS P++AS
Sbjct: 294 WRRLCHHAGLSAVHVTMLHAGACRRPRPSRWSSSPAAAS 332

>ref|NP_727910.1| shibire CG18102-PD [Drosophila melanogaster]
           gi|33302264|sp|P27619|DYN_DROME Dynamin (dDyn) (Shibire
           protein) gi|22832310|gb|AAF48536.2| CG18102-PD
           [Drosophila melanogaster] gi|33589502|gb|AAQ22518.1|
           LD21622p [Drosophila melanogaster]
          Length = 877

 Score = 38.9 bits (89), Expect = 0.036
 Identities = 22/71 (30%), Positives = 30/71 (41%)
 Frame = -1

Query: 470 APAAAPGRPGAPAQAAAAAPGTQMRRTCHRPSPESDRGKRAATPRTLGGGAGASLATPPY 291
           +P    G+PG PAQ++       +  +  RP+P          P   GG  G SL  P  
Sbjct: 767 SPGGVRGKPGPPAQSSLGGRNPPLPPSTGRPAPAIPNRPGGGAPPLPGGRPGGSLPPPML 826

Query: 290 RSRWAGAAATA 258
            SR +GA   A
Sbjct: 827 PSRVSGAVGGA 837

>pir||S17975 dynamin-like protein 3 - fruit fly (Drosophila sp.)
          Length = 883

 Score = 38.9 bits (89), Expect = 0.036
 Identities = 22/71 (30%), Positives = 30/71 (41%)
 Frame = -1

Query: 470 APAAAPGRPGAPAQAAAAAPGTQMRRTCHRPSPESDRGKRAATPRTLGGGAGASLATPPY 291
           +P    G+PG PAQ++       +  +  RP+P          P   GG  G SL  P  
Sbjct: 773 SPGGVRGKPGPPAQSSLGGRNPPLPPSTGRPAPAIPNRPGGGAPPLPGGRPGGSLPPPML 832

Query: 290 RSRWAGAAATA 258
            SR +GA   A
Sbjct: 833 PSRVSGAVGGA 843

>pir||S16130 dynamin 4 - fruit fly (Drosophila melanogaster)
           gi|7833|emb|CAA42068.1| dynamin [Drosophila
           melanogaster] gi|227858|prf||1712319A dynamin
          Length = 883

 Score = 38.9 bits (89), Expect = 0.036
 Identities = 22/71 (30%), Positives = 30/71 (41%)
 Frame = -1

Query: 470 APAAAPGRPGAPAQAAAAAPGTQMRRTCHRPSPESDRGKRAATPRTLGGGAGASLATPPY 291
           +P    G+PG PAQ++       +  +  RP+P          P   GG  G SL  P  
Sbjct: 773 SPGGVRGKPGPPAQSSLGGRNPPLPPSTGRPAPAIPNRPGGGAPPLPGGRPGGSLPPPML 832

Query: 290 RSRWAGAAATA 258
            SR +GA   A
Sbjct: 833 PSRVSGAVGGA 843



EST assemble image


clone accession position
1 LCL049h12_r AV628983 1 301
2 HCL086g10_r AV644347 44 175
3 CL55h10_r AV396019 56 503




Chlamydomonas reinhardtii
Kazusa DNA Research Institute