KCC000689A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000689A_C01 KCC000689A_c01
gaaaagaccgtgcggaatagGCGGACTTCCGCCCCCATCCCTGCTCGCGGTCTCTGCATA
GCGGTCGAGTCAAAGCCGCCCGTGTACACCACCCACCTTACACTTCACCCAACCAACCAA
AAATGCAGTGCGTGTCCCGCGTCGCCCAGCGCTCGGCTGTGAGCCGCCCCCGCGTGGCCT
CGCGCCAGGCGGTGAAGGTCCAGGCTGTGAAGGCCGAGTCCAAGGCCGCCATGGCTGCCG
TGGCTGCTGGTGCCTCGACCCTGGCTCTGGCCCTGGCCCCCGCTGCCCAGGCTGCCCAGG
CAGGTGGCCATGCTGGCTGAGGGCGAGCCTGCCATCGTCCAGATCGGCTGGGCCGCTACC
TGCGTGATGTTCTCGTTCTCCCTGTCCCTGGTGGTCTGGGGCCGCTCTGGCCCTGTAAAT
TGCTCGCTTGCGGGCAACTGGGCCGCTGCTAGAGAGCCGTGATGATGGACATCAGTCGTC
GTCGCCTAACTCCAGCTGGGCTCATAGGGCTGTGGAGAGCCTGATGACCCGCGGTCGTCG
GGCGACTTCAACCACTCGGCGCAGTGGGACCCTTTGCAGTGCGCGAGGGCTCTGCGGGCG
CCTCAATTTTGGGCGTTGCTTCGAAGGCGGGAGAGGAGGCTTCTGACACGCGGCGTGGCC
CGTTGGCACGTCTGGCGCTGAGGACGGCTGTGTGGCAGAGTCTCCAACACCAATTTTTTG
CGTTGGAGACTAGTCCGGAGTTATGCGAGGGAGATATGCAGCCGGGGGGGCCAGCGCGCC
GTGTGCGTGGTGGCCCCATGGGTGCAACAGGCGTGTGCACGAGGGGTTTTCTCGTGTGAG
GCACAGGCGCCCGTTGTTCATCCGCCGCGGCCGTTGCTGCGCGTGCAGACTCGCACAGCG
CACCTGCGCCCGCTCCATGGCGTGATCATGCATAGTCGGAGGATTAGCACCAAGTGCTCG
GGCGGGCGTTTGCTGTCTTGGAGTAGTCATGGTGATGGTGTGGACGCGTGGCGAGTCTGT
GTGCGAGCACAGACTGTGCCTGCTGGATGTTGGGTGTTTGCACCCGTGTAAACTTGAGAA
GATCAT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000689A_C01 KCC000689A_c01
         (1086 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAD55570.1|AF110788_1 unknown [Volvox carteri f. nagariensis]       98  1e-36
gb|AAK61381.1| basic proline-rich protein [Sus scrofa]                 43  1e-05
gb|AAK61382.1| basic proline-rich protein [Sus scrofa]                 43  1e-05
ref|NP_064121.1| pr5 [Rat cytomegalovirus] gi|9800242|gb|AAF9911...    49  2e-04
dbj|BAB47460.1| KIAA1831 protein [Homo sapiens]                        40  3e-04

>gb|AAD55570.1|AF110788_1 unknown [Volvox carteri f. nagariensis]
          Length = 98

 Score = 98.2 bits (243), Expect(2) = 1e-36
 Identities = 57/60 (95%), Positives = 57/60 (95%), Gaps = 1/60 (1%)
 Frame = +3

Query: 123 MQCVSRVAQRSAVSRPRVASRQAVKVQAVK-AESKAAMAAVAAGASTLALALAPAAQAAQ 299
           MQCVSRVAQRSAVSRPRVASRQAVKVQAVK AE KAAMAAVAA ASTLALALAPAAQAAQ
Sbjct: 1   MQCVSRVAQRSAVSRPRVASRQAVKVQAVKPAEQKAAMAAVAATASTLALALAPAAQAAQ 60

 Score = 78.6 bits (192), Expect(2) = 1e-36
 Identities = 37/44 (84%), Positives = 40/44 (90%)
 Frame = +1

Query: 280 PLPRLPRQVAMLAEGEPAIVQIGWAATCVMFSFSLSLVVWGRSG 411
           P  +  ++VAMLAEGEPAIVQIGWAATCVMFSFSLSLVVWGRSG
Sbjct: 54  PAAQAAQEVAMLAEGEPAIVQIGWAATCVMFSFSLSLVVWGRSG 97

>gb|AAK61381.1| basic proline-rich protein [Sus scrofa]
          Length = 566

 Score = 42.7 bits (99), Expect = 0.011
 Identities = 33/89 (37%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
 Frame = -1

Query: 408 RAAPDHQGQGE----REHHAGSGPADLDDGRLALSQHGHLPGQPGQRGPGPEPGSRHQQP 241
           R  P  + QGE    R    G GP        A    G  P  P   GP P PG+R    
Sbjct: 45  RPPPPEESQGEGHQKRPRPPGDGPEQGPAPPGARPPPGPPPPGPPPPGPAP-PGARPP-- 101

Query: 240 RQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
             P  P   P  PGP+PPGARP  G   P
Sbjct: 102 --PGPPPPGPPPPGPAPPGARPPPGPPPP 128

 Score = 42.0 bits (97), Expect(2) = 5e-05
 Identities = 22/52 (42%), Positives = 24/52 (45%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQPSAG 145
           P  PG   PGP P      P  P      P  PGP+PPGARP  G   P+ G
Sbjct: 104 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPPGARPPPGPPPPAGG 152

 Score = 40.8 bits (94), Expect(3) = 1e-05
 Identities = 22/49 (44%), Positives = 23/49 (46%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P   H     P  P   P  PGP+PPGARP  G   P
Sbjct: 283 PPPPGPPPPGPAP---HGARPPPGPPPPGPPPPGPAPPGARPPPGPPPP 328

 Score = 40.8 bits (94), Expect = 0.041
 Identities = 22/52 (42%), Positives = 23/52 (43%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQPSAG 145
           P  PG   PGP P      P  P      P  PGP+PPGARP  G   P  G
Sbjct: 505 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPPGARPPPGPPPPPPG 553

 Score = 40.8 bits (94), Expect = 0.041
 Identities = 25/50 (50%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = -1

Query: 300 PGQPGQRGPGPEP-GSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P G+R   PR P  P   P  PGP+PPGARP  G   P
Sbjct: 484 PPPPGPPPPGPAPPGAR---PR-PGPPPPGPPPPGPAPPGARPPPGPPPP 529

 Score = 39.3 bits (90), Expect = 0.12
 Identities = 21/49 (42%), Positives = 22/49 (44%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P      P  P      P  PGP+PPGARP  G   P
Sbjct: 325 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPPGARPPPGPPPP 370

 Score = 39.3 bits (90), Expect = 0.12
 Identities = 21/49 (42%), Positives = 22/49 (44%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P      P  P      P  PGP+PPGARP  G   P
Sbjct: 304 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPPGARPPPGPPPP 349

 Score = 39.3 bits (90), Expect = 0.12
 Identities = 21/49 (42%), Positives = 22/49 (44%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P      P  P      P  PGP+PPGARP  G   P
Sbjct: 241 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPPGARPPPGPPPP 286

 Score = 39.3 bits (90), Expect = 0.12
 Identities = 21/49 (42%), Positives = 22/49 (44%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P      P  P      P  PGP+PPGARP  G   P
Sbjct: 367 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPPGARPPPGPPPP 412

 Score = 39.3 bits (90), Expect = 0.12
 Identities = 21/49 (42%), Positives = 22/49 (44%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P      P  P      P  PGP+PPGARP  G   P
Sbjct: 388 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPPGARPLPGPPPP 433

 Score = 39.3 bits (90), Expect = 0.12
 Identities = 21/49 (42%), Positives = 22/49 (44%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P      P  P      P  PGP+PPGARP  G   P
Sbjct: 346 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPPGARPPPGPPPP 391

 Score = 38.9 bits (89), Expect = 0.16
 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 6/55 (10%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQP------GPSPPGARPRGGGSQP 154
           P    Q+GP P      ++P  P  P   P  P      GP+PPGARPR G   P
Sbjct: 454 PADEPQQGPAPSGDKPKKKPPPPAGPPPPPPPPPGPPPPGPAPPGARPRPGPPPP 508

 Score = 38.5 bits (88), Expect = 0.21
 Identities = 24/62 (38%), Positives = 28/62 (44%), Gaps = 7/62 (11%)
 Frame = -1

Query: 318 SQHGHLPGQPG-QRGPGPEPGSRHQQPRQPWRPWTRPSQP------GPSPPGARPRGGGS 160
           SQ G  P   G Q+GP P      ++P  P  P   P  P      GP+PPGARP  G  
Sbjct: 204 SQEGSPPSADGPQQGPAPSGDKPKKKPPPPAGPPPPPPPPPGPPPPGPAPPGARPPPGPP 263

Query: 159 QP 154
            P
Sbjct: 264 PP 265

 Score = 37.4 bits (85), Expect = 0.46
 Identities = 22/52 (42%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = -1

Query: 300 PGQPGQRGPG--PEPGSRHQQPRQPW-RPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG R P   P PG     P  P  RP   P  PGP PPG  P G    P
Sbjct: 251 PAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPHGARPPP 302

 Score = 37.4 bits (85), Expect = 0.46
 Identities = 22/52 (42%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = -1

Query: 300 PGQPGQRGPG--PEPGSRHQQPRQPW-RPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG R P   P PG     P  P  RP   P  PGP PPG  P G    P
Sbjct: 398 PAPPGARPPPGPPPPGPPPPGPAPPGARPLPGPPPPGPPPPGPAPPGARPPP 449

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           PG    R P PE        ++P  P   P Q GP+PPGARP  G   P
Sbjct: 39  PGGGPPRPPPPEESQGEGHQKRPRPPGDGPEQ-GPAPPGARPPPGPPPP 86

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 25/62 (40%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
 Frame = -1

Query: 315 QHGHLPGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARP------RGGGSQP 154
           Q G  P   G +   P PG+ H  PR P  P    SQPGP PP   P         GS P
Sbjct: 154 QQGPAPSHVGPKKKPPPPGAGHP-PRPP--PPANESQPGPRPPPGPPSPPANDSQEGSPP 210

Query: 153 SA 148
           SA
Sbjct: 211 SA 212

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 20/49 (40%), Positives = 21/49 (42%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P      P  P      P  PGP+P GARP  G   P
Sbjct: 262 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPHGARPPPGPPPP 307

 Score = 28.1 bits (61), Expect(2) = 5e-05
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 445 RPSCPQASNLQG-QSGPRPPGTGRTRTSRR*RPSRSGRWQARPQPAWPP 302
           RP  P+ S  +G Q  PRPPG G  +      P+  G   ARP P  PP
Sbjct: 45  RPPPPEESQGEGHQKRPRPPGDGPEQ-----GPAPPG---ARPPPGPPP 85

 Score = 27.3 bits (59), Expect(3) = 1e-05
 Identities = 20/63 (31%), Positives = 26/63 (40%), Gaps = 1/63 (1%)
 Frame = -1

Query: 771 APPAAYLPRITPD*SPTQKIGVGDSATQPSSAPDVP-TGHAACQKPPLPPSKQRPKLRRP 595
           APP A  P   P  +   + G   S   P   P  P  GH    +PP P ++ +P  R P
Sbjct: 136 APPGARPPPGPPPPAGGLQQGPAPSHVGPKKKPPPPGAGHPP--RPPPPANESQPGPRPP 193

Query: 594 QSP 586
             P
Sbjct: 194 PGP 196

 Score = 22.7 bits (47), Expect(3) = 1e-05
 Identities = 24/99 (24%), Positives = 28/99 (28%)
 Frame = -3

Query: 598 PAEPSRTAKGPTAPSG*SRPTTAGHQALHSPMSPAGVRRRRLMSIITAL*QRPSCPQASN 419
           PA  S+    P+A      P  +G +    P  PAG                P  P    
Sbjct: 200 PANDSQEGSPPSADGPQQGPAPSGDKPKKKPPPPAG---------------PPPPPPPPP 244

Query: 418 LQGQSGPRPPGTGRTRTSRR*RPSRSGRWQARPQPAWPP 302
                GP PPG                   ARP P  PP
Sbjct: 245 GPPPPGPAPPG-------------------ARPPPGPPP 264

>gb|AAK61382.1| basic proline-rich protein [Sus scrofa]
          Length = 511

 Score = 42.7 bits (99), Expect = 0.011
 Identities = 33/89 (37%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
 Frame = -1

Query: 408 RAAPDHQGQGE----REHHAGSGPADLDDGRLALSQHGHLPGQPGQRGPGPEPGSRHQQP 241
           R  P  + QGE    R    G GP        A    G  P  P   GP P PG+R    
Sbjct: 45  RPPPPEESQGEGHQKRPRPPGDGPEQGPAPPGARPPPGPPPPGPPPPGPAP-PGARPP-- 101

Query: 240 RQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
             P  P   P  PGP+PPGARP  G   P
Sbjct: 102 --PGPPPPGPPPPGPAPPGARPPPGPPPP 128

 Score = 42.0 bits (97), Expect(2) = 5e-05
 Identities = 22/52 (42%), Positives = 24/52 (45%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQPSAG 145
           P  PG   PGP P      P  P      P  PGP+PPGARP  G   P+ G
Sbjct: 104 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPPGARPPPGPPPPAGG 152

 Score = 40.8 bits (94), Expect(3) = 1e-05
 Identities = 22/49 (44%), Positives = 23/49 (46%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P   H     P  P   P  PGP+PPGARP  G   P
Sbjct: 283 PPPPGPPPPGPAP---HGARPPPGPPPPGPPPPGPAPPGARPPPGPPPP 328

 Score = 39.3 bits (90), Expect = 0.12
 Identities = 21/49 (42%), Positives = 22/49 (44%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P      P  P      P  PGP+PPGARP  G   P
Sbjct: 304 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPPGARPPPGPPPP 349

 Score = 39.3 bits (90), Expect = 0.12
 Identities = 21/49 (42%), Positives = 22/49 (44%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P      P  P      P  PGP+PPGARP  G   P
Sbjct: 241 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPPGARPPPGPPPP 286

 Score = 39.3 bits (90), Expect = 0.12
 Identities = 21/49 (42%), Positives = 22/49 (44%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P      P  P      P  PGP+PPGARP  G   P
Sbjct: 367 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPPGARPPPGPPPP 412

 Score = 39.3 bits (90), Expect = 0.12
 Identities = 21/49 (42%), Positives = 22/49 (44%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P      P  P      P  PGP+PPGARP  G   P
Sbjct: 388 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPPGARPLPGPPPP 433

 Score = 39.3 bits (90), Expect = 0.12
 Identities = 21/49 (42%), Positives = 22/49 (44%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P      P  P      P  PGP+PPGARP  G   P
Sbjct: 346 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPPGARPPPGPPPP 391

 Score = 39.3 bits (90), Expect = 0.12
 Identities = 21/49 (42%), Positives = 22/49 (44%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P      P  P      P  PGP+PPGARP  G   P
Sbjct: 325 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPPGARPPPGPPPP 370

 Score = 38.5 bits (88), Expect = 0.21
 Identities = 24/62 (38%), Positives = 28/62 (44%), Gaps = 7/62 (11%)
 Frame = -1

Query: 318 SQHGHLPGQPG-QRGPGPEPGSRHQQPRQPWRPWTRPSQP------GPSPPGARPRGGGS 160
           SQ G  P   G Q+GP P      ++P  P  P   P  P      GP+PPGARP  G  
Sbjct: 204 SQEGSPPSADGPQQGPAPSGDKPKKKPPPPAGPPPPPPPPPGPPPPGPAPPGARPPPGPP 263

Query: 159 QP 154
            P
Sbjct: 264 PP 265

 Score = 37.4 bits (85), Expect = 0.46
 Identities = 22/52 (42%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = -1

Query: 300 PGQPGQRGPG--PEPGSRHQQPRQPW-RPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG R P   P PG     P  P  RP   P  PGP PPG  P G    P
Sbjct: 251 PAPPGARPPPGPPPPGPPPPGPAPPGARPPPGPPPPGPPPPGPAPHGARPPP 302

 Score = 37.4 bits (85), Expect = 0.46
 Identities = 22/52 (42%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
 Frame = -1

Query: 300 PGQPGQRGPG--PEPGSRHQQPRQPW-RPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG R P   P PG     P  P  RP   P  PGP PPG  P G    P
Sbjct: 398 PAPPGARPPPGPPPPGPPPPGPAPPGARPLPGPPPPGPPPPGPAPPGARPPP 449

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 20/49 (40%), Positives = 23/49 (46%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           PG    R P PE        ++P  P   P Q GP+PPGARP  G   P
Sbjct: 39  PGGGPPRPPPPEESQGEGHQKRPRPPGDGPEQ-GPAPPGARPPPGPPPP 86

 Score = 36.2 bits (82), Expect = 1.0
 Identities = 25/62 (40%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
 Frame = -1

Query: 315 QHGHLPGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARP------RGGGSQP 154
           Q G  P   G +   P PG+ H  PR P  P    SQPGP PP   P         GS P
Sbjct: 154 QQGPAPSHVGPKKKPPPPGAGHP-PRPP--PPANESQPGPRPPPGPPSPPANDSQEGSPP 210

Query: 153 SA 148
           SA
Sbjct: 211 SA 212

 Score = 35.8 bits (81), Expect = 1.3
 Identities = 20/49 (40%), Positives = 21/49 (42%)
 Frame = -1

Query: 300 PGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQP 154
           P  PG   PGP P      P  P      P  PGP+P GARP  G   P
Sbjct: 262 PPPPGPPPPGPAPPGARPPPGPPP---PGPPPPGPAPHGARPPPGPPPP 307

 Score = 28.1 bits (61), Expect(2) = 5e-05
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -3

Query: 445 RPSCPQASNLQG-QSGPRPPGTGRTRTSRR*RPSRSGRWQARPQPAWPP 302
           RP  P+ S  +G Q  PRPPG G  +      P+  G   ARP P  PP
Sbjct: 45  RPPPPEESQGEGHQKRPRPPGDGPEQ-----GPAPPG---ARPPPGPPP 85

 Score = 27.3 bits (59), Expect(3) = 1e-05
 Identities = 20/63 (31%), Positives = 26/63 (40%), Gaps = 1/63 (1%)
 Frame = -1

Query: 771 APPAAYLPRITPD*SPTQKIGVGDSATQPSSAPDVP-TGHAACQKPPLPPSKQRPKLRRP 595
           APP A  P   P  +   + G   S   P   P  P  GH    +PP P ++ +P  R P
Sbjct: 136 APPGARPPPGPPPPAGGLQQGPAPSHVGPKKKPPPPGAGHPP--RPPPPANESQPGPRPP 193

Query: 594 QSP 586
             P
Sbjct: 194 PGP 196

 Score = 22.7 bits (47), Expect(3) = 1e-05
 Identities = 24/99 (24%), Positives = 28/99 (28%)
 Frame = -3

Query: 598 PAEPSRTAKGPTAPSG*SRPTTAGHQALHSPMSPAGVRRRRLMSIITAL*QRPSCPQASN 419
           PA  S+    P+A      P  +G +    P  PAG                P  P    
Sbjct: 200 PANDSQEGSPPSADGPQQGPAPSGDKPKKKPPPPAG---------------PPPPPPPPP 244

Query: 418 LQGQSGPRPPGTGRTRTSRR*RPSRSGRWQARPQPAWPP 302
                GP PPG                   ARP P  PP
Sbjct: 245 GPPPPGPAPPG-------------------ARPPPGPPP 264

>ref|NP_064121.1| pr5 [Rat cytomegalovirus] gi|9800242|gb|AAF99116.1|AF232689_7 pr5
            [rat cytomegalovirus Maastricht]
          Length = 629

 Score = 48.5 bits (114), Expect = 2e-04
 Identities = 72/281 (25%), Positives = 97/281 (33%), Gaps = 17/281 (6%)
 Frame = -3

Query: 916  GAGAGALCESARAATAAADEQRAPVPHTRKPLVHTPVAPMGPPRTRRAGPPGCISPSHNS 737
            G G G      R A A   E+  P P   +P+         PPR R AGP G  S +   
Sbjct: 371  GRGYGDPTVPPRPAVA---EEACPAPGASRPIP----TDAAPPR-RPAGPRGASSSTAPG 422

Query: 736  GLVSNAKNWCWRL---CHTAVLSA--------RRANGPRRVSEASSPAFEATPKIEAPAE 590
               S +   CW     C T+  S         R A G  R + A+S    A+ +  +PA 
Sbjct: 423  TGRSASPPACWTATASCWTSPSSGPTSTATRTRTAGGTGRATAATSDGTAASSRTTSPAR 482

Query: 589  P---SRTAKGPTAPSG*SRPTTAGHQALHSPMSPAGVRRRRLMSIITAL*QRPSCPQASN 419
            P     T++ P +      PTT                              P+   AS 
Sbjct: 483  PCGSPATSRAPASGGSARGPTT-----------------------------WPASTAASC 513

Query: 418  LQGQSGPRPPGTGRTRTSRR*RPSRSGR--WQARPQPAWP-PAWAAWAAGARARARVEAP 248
               +S     G  R R      P+RSGR  W     P WP P  AA + G   R    + 
Sbjct: 514  TTRRSSSTCRGAARPRDGSSPTPARSGRCPW----SPPWPRPGSAAASTGRGIRGSSPSS 569

Query: 247  AATAAMAALDSAFTAWTFTAWREATRGRLTAERWATRDTHC 125
            ++ ++    DS+   WT        R   TA R A+R   C
Sbjct: 570  SSRSSATGTDSSSGTWT-------GRPTGTASRSASRPARC 603

>dbj|BAB47460.1| KIAA1831 protein [Homo sapiens]
          Length = 663

 Score = 40.0 bits (92), Expect(2) = 3e-04
 Identities = 53/200 (26%), Positives = 80/200 (39%), Gaps = 7/200 (3%)
 Frame = -1

Query: 657 HAACQKPPLPPSKQRPKLRRPQSPRALQRVPLRRVVEVARRPRVIRLSTAL*AQLELGDD 478
           H    +  LP + +R K++  +  RA++    RR V  AR+ + I  + A  A L+    
Sbjct: 374 HGGRVRSLLPLALRRGKVKE-KVDRAVEGA--RRAVSAARQRQEIAAARAADALLKAV-- 428

Query: 477 D*CPSSRLSSSGPVARKRAIYRARAAP--DHQGQGEREHHAGSGPADLDDGRLALSQHGH 304
               SS    +   AR   +      P  +  G+  R+   GS    LD+    + ++G 
Sbjct: 429 --AASSVAEKAVEAARMAKLIAQDLQPMLEAPGRRPRQDSEGSDTEPLDEDSPGVYENGL 486

Query: 303 LPGQPGQRGPGPEPGSRHQQPRQPWRPWTRPSQPGPSPPGARPRGGGSQPSA-----GRR 139
            P +       PE  S     RQPWRP   P+   P PPG   +G  S P A     G  
Sbjct: 487 TPSEGS-----PELPSSPASSRQPWRP---PACRSPLPPGG-DQGPFSSPKAWPEEWGGA 537

Query: 138 GTRTAFLVGWVKCKVGGVHG 79
           G +   L G+      G+ G
Sbjct: 538 GAQAEELAGYEAEDEAGMQG 557

 Score = 27.3 bits (59), Expect(2) = 3e-04
 Identities = 17/61 (27%), Positives = 26/61 (41%), Gaps = 1/61 (1%)
 Frame = -3

Query: 820 VHTPVAPMGPPRTRRAGPPGCISPSHNSGLVSNAKNWCWRLCHTAVLS-ARRANGPRRVS 644
           V + V   GPP +  +GPP    P+   G  +      WR    +    ++R+NG R   
Sbjct: 283 VSSEVGSTGPPGSEASGPPAAAPPALIEGSATEVYAGEWRADRRSGFGVSQRSNGLRYEG 342

Query: 643 E 641
           E
Sbjct: 343 E 343



EST assemble image


clone accession position
1 CM008g02_r AV386755 1 601
2 HC004a06_r AV632107 13 649
3 CL71f11_r AV396895 20 646
4 CM048d01_r AV389109 21 379
5 HC088e10_r AV638613 39 663
6 LCL084f10_r AV630813 97 620
7 CM003f04_r AV386572 100 537
8 MXL093b09_r BP098430 103 509
9 MXL074h01_r BP097386 103 527
10 CM035b02_r AV388730 106 701
11 MXL038g12_r BP095249 106 527
12 LCL080c03_r AV630524 107 593
13 MX023b08_r BP087029 112 650
14 LCL077g01_r AV630354 113 581
15 HC056a09_r AV636169 114 519
16 CM059g01_r AV390648 117 789
17 CL66e11_r AV396733 118 585
18 CM053d10_r AV389903 118 575
19 CM024c09_r AV388268 118 699
20 MX005h01_r BP086288 118 566
21 CM007g03_r AV386815 118 706
22 HC067g08_r AV637035 118 629
23 HC095a06_r AV639102 120 597
24 HC017e11_r AV633168 122 579
25 HC010g09_r AV632646 123 506
26 MX019b11_r BP086871 126 536
27 HC037a10_r AV634728 134 531
28 CM035a12_r AV388719 309 608
29 CM028c07_r AV387691 518 1119
30 LC055f11_r AV622862 615 1116
31 MX241d07_r BP091589 627 1119
32 CL55c10_r AV396015 676 1121




Chlamydomonas reinhardtii
Kazusa DNA Research Institute