KCC000688A_c02
[Fasta Sequence]
[Nr Search]
[EST assemble image]
Fasta Sequence
>KCC000688A_C02 KCC000688A_c02
gcacgagATGGCTCGCCTTCACATCCATCCCCTTGGGTTGTTCCTGCTGTTCTTCGGACT
GCTGTCTTGGGTTGTGGCGTTGGGCGGCCTCGGAGCTAGCACGAATGACTGCATGAACAA
CAGGCCGCCGGGCGCTAAAGCGGACTACTGCGCTAATATGTACCAGACGGAATGGTGGAC
CATTTGGTTCGAATTCTTCCTGCTGGTGATCATGCTGCTGACATGCTTCACGGCGGCATT
CGAGCGCGCGCGGTACATCTACCTGACCTACCTGGCCATGGTGACGGTGCAGCTCACCTA
CGTGTCTCAGCAGTTCATCACCAACAGCTTCTCCATCGGTGGCCTCAGCTTCAACGACTA
CAAGTCGGAGGCGTACAACGCTGCGGCTGCGGGTGCTGTGCTGCTGTGCATTACCAACTT
CGCTCTGATCATCTTCGTTGGCCTGGGCGCCACCGCCGCGCCCGGCACTACGGGCCTGCC
CACCTTCACGCCGCTGTCGCTGCAGATGGGCTCCTCCGCGCCCGTGCCCGCCACCAGCTC
GGCGCCCACCACCATGGAGCAGAAGTACCAGCCCAGCACCTACCAGCCCTCCAACTTCTA
GGCGTGCAGCGAGCAGAGGTCGCTTGGGCGAATAGGAACACAGCAGCAGCTGCAGCGGGC
GGAGCT
Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000688A_C02 KCC000688A_c02
(666 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_011043.1| Transmembrane osmosensor (structurally unrelate... 52 1e-05
emb|CAC81238.1| SHO1 protein [Candida albicans] 47 2e-04
ref|NP_730262.2| CG13731-PA [Drosophila melanogaster] gi|2838049... 47 3e-04
gb|AAF08808.1|AF192750_1 synapsin IIb [Lampetra fluviatilis] 47 3e-04
ref|NP_294632.1| hypothetical protein [Deinococcus radiodurans] ... 47 3e-04
>ref|NP_011043.1| Transmembrane osmosensor (structurally unrelated to SLN1) with four
transmembrane segments & a cytoplasmic SH3-domain. The
SH3-domain interacts with a proline-rich motif in the
N-terminal region of Pbs2p (a MAP kinase kinase
homolog); Sho1p [Saccharomyces cerevisiae]
gi|731506|sp|P40073|SS81_YEAST SSU81 protein (SHO1
osmosensor) gi|1077699|pir||S50621 SSU81 protein - yeast
(Saccharomyces cerevisiae) gi|603357|gb|AAC03216.1|
Ssu81p: Transmembrane osmosensor [Saccharomyces
cerevisiae] gi|622950|gb|AAA61904.1| Ssu81p
gi|940328|gb|AAC41664.1| SHO1 gene product
Length = 367
Score = 51.6 bits (122), Expect = 1e-05
Identities = 43/165 (26%), Positives = 75/165 (45%), Gaps = 3/165 (1%)
Frame = +2
Query: 5 EMARLHIHPLGLFLLFFGLLSWVVALGG--LGASTNDCMNNRPPGAKADYCANMYQTEWW 178
+M + + P + + ++SWV+A+GG ASTN+ + + WW
Sbjct: 24 KMKKFYADPFAISSISLAIVSWVIAIGGSISSASTNE---------------SFPRFTWW 68
Query: 179 TIWFEFFLLV-IMLLTCFTAAFERARYIYLTYLAMVTVQLTYVSQQFITNSFSIGGLSFN 355
I ++F ++ +ML CF Y +T T ++ F+ N+ S L +
Sbjct: 69 GIVYQFLIICSLMLFYCFDLVDH--------YRIFIT---TSIAVAFVYNTNSATNLVYA 117
Query: 356 DYKSEAYNAAAAGAVLLCITNFALIIFVGLGATAAPGTTGLPTFT 490
D +A AA+AG +LL I N I++ G G A+P + +F+
Sbjct: 118 DGPKKA--AASAGVILLSIINLIWILYYG-GDNASPTNRWIDSFS 159
>emb|CAC81238.1| SHO1 protein [Candida albicans]
Length = 387
Score = 47.4 bits (111), Expect = 2e-04
Identities = 34/154 (22%), Positives = 64/154 (41%)
Frame = +2
Query: 29 PLGLFLLFFGLLSWVVALGGLGASTNDCMNNRPPGAKADYCANMYQTEWWTIWFEFFLLV 208
P + + FG+++WVVA+ G +S + N WW I ++ +++
Sbjct: 12 PFAISTVSFGIMAWVVAIAGAASSKQE---------------NFPHFSWWGISYQIVIIL 56
Query: 209 IMLLTCFTAAFERARYIYLTYLAMVTVQLTYVSQQFITNSFSIGGLSFNDYKSEAYNAAA 388
I+ + E ++ + +++ + T + I NS S G L A
Sbjct: 57 IIFVLYANNNIELYKFTLVGLVSIAFIYTTNSTNNLIYNSNSAGNL-----------CCA 105
Query: 389 AGAVLLCITNFALIIFVGLGATAAPGTTGLPTFT 490
AG +LL I N I++ G G +P + +F+
Sbjct: 106 AGCILLSILNLIWILYFG-GHPESPTNQFIDSFS 138
>ref|NP_730262.2| CG13731-PA [Drosophila melanogaster] gi|28380492|gb|AAF49349.4|
CG13731-PA [Drosophila melanogaster]
Length = 926
Score = 47.0 bits (110), Expect = 3e-04
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 12/63 (19%)
Frame = +3
Query: 450 PPPRPALRACPPSRRCRCRWAPP-----------RPCPPPARRPPPWSRSTSPAPT-SPP 593
PP RP + PP+ R + PP RP PPP R PPP +R+++PAPT PP
Sbjct: 324 PPTRPPTK--PPTTRPPATYLPPTNKPPPPVTTRRPTPPPTRPPPPPTRASTPAPTYLPP 381
Query: 594 TSR 602
T++
Sbjct: 382 TNK 384
Score = 43.9 bits (102), Expect = 0.002
Identities = 24/59 (40%), Positives = 31/59 (51%), Gaps = 8/59 (13%)
Frame = +3
Query: 450 PPPRPALRACPPSRRCRCRWAPPR-------PCPPPARRPPPWSRSTSPAPT-SPPTSR 602
PP +P PP R PP P PPP R PPP +R+++PAPT PPT++
Sbjct: 537 PPTKPPTTYLPPVTVRTTRATPPPTRPPTRPPTPPPTRPPPPPTRASTPAPTYLPPTNK 595
Score = 40.4 bits (93), Expect = 0.024
Identities = 26/62 (41%), Positives = 32/62 (50%), Gaps = 7/62 (11%)
Frame = +3
Query: 450 PPPRPALRACPPSRRCRCRWAPP--RPCPPPARR---PPPWSRSTSPA--PTSPPTSRRA 608
PP RP R PP+ R + PP +P PP R PPP R+ P PT PPT+R
Sbjct: 281 PPTRPPTR--PPTTRPPATYLPPTNKPLPPVTTRLPPPPPPPRTPPPTRPPTKPPTTRPP 338
Query: 609 AS 614
A+
Sbjct: 339 AT 340
Score = 40.4 bits (93), Expect = 0.024
Identities = 26/62 (41%), Positives = 32/62 (50%), Gaps = 7/62 (11%)
Frame = +3
Query: 450 PPPRPALRACPPSRRCRCRWAPP--RPCPPPARR---PPPWSRSTSPA--PTSPPTSRRA 608
PP RP R PP+ R + PP +P PP R PPP R+ P PT PPT+R
Sbjct: 238 PPTRPPTR--PPTTRPPATYLPPTNKPLPPVTTRLPPPPPSPRTPPPTRPPTRPPTTRPP 295
Query: 609 AS 614
A+
Sbjct: 296 AT 297
Score = 38.9 bits (89), Expect = 0.070
Identities = 36/127 (28%), Positives = 45/127 (35%), Gaps = 25/127 (19%)
Frame = +3
Query: 300 TCLSSSSPTASPSVASASTTTSRRRTTLRLRVLCCCALPTSL*SSSLAWAPPPRPALRAC 479
T ++ PT P+ T+RR TT L P + PRP L
Sbjct: 661 TTRATPPPTRPPTRPPTYPPTTRRLTTPAPTYLPPTNKPLPPVTVRTTVRTTPRPTLPPT 720
Query: 480 PPSRRCRCRWAPP------RPCPPPARRP-------------------PPWSRSTSPAPT 584
P R + PP RP PPP R P PP +R + PT
Sbjct: 721 KPPTRPPTTYLPPPTVRTTRPPPPPTRPPTKPPTTYLPPVTVRTTRATPPPTRPPTRPPT 780
Query: 585 SPPTSRR 605
PPT+RR
Sbjct: 781 YPPTTRR 787
Score = 37.4 bits (85), Expect = 0.20
Identities = 22/57 (38%), Positives = 27/57 (46%), Gaps = 2/57 (3%)
Frame = +3
Query: 450 PPPRPALRACPPSRRCRCRWAPPRPCPPPARRPPP--WSRSTSPAPTSPPTSRRAAS 614
PPPR PP++ R PP PP +PPP +R +P PT PP AS
Sbjct: 318 PPPRTPPPTRPPTKPPTTR--PPATYLPPTNKPPPPVTTRRPTPPPTRPPPPPTRAS 372
Score = 36.6 bits (83), Expect = 0.35
Identities = 22/54 (40%), Positives = 26/54 (47%), Gaps = 3/54 (5%)
Frame = +3
Query: 450 PPPRPALRACPPSRRCRCRWAPPRPCPP--PARRPPPWSRSTSPAPT-SPPTSR 602
PP +P PP R PP PP P PP R T+PAPT PPT++
Sbjct: 645 PPTKPPTTYLPPVTVRTTRATPPPTRPPTRPPTYPPTTRRLTTPAPTYLPPTNK 698
Score = 36.6 bits (83), Expect = 0.35
Identities = 22/54 (40%), Positives = 26/54 (47%), Gaps = 3/54 (5%)
Frame = +3
Query: 450 PPPRPALRACPPSRRCRCRWAPPRPCPP--PARRPPPWSRSTSPAPT-SPPTSR 602
PP +P PP R PP PP P PP R T+PAPT PPT++
Sbjct: 748 PPTKPPTTYLPPVTVRTTRATPPPTRPPTRPPTYPPTTRRLTTPAPTYLPPTNK 801
Score = 36.6 bits (83), Expect = 0.35
Identities = 22/54 (40%), Positives = 26/54 (47%), Gaps = 3/54 (5%)
Frame = +3
Query: 450 PPPRPALRACPPSRRCRCRWAPPRPCPP--PARRPPPWSRSTSPAPT-SPPTSR 602
PP +P PP R PP PP P PP R T+PAPT PPT++
Sbjct: 434 PPTKPPTTYLPPVTVRTTRATPPPTRPPTRPPTYPPTTRRLTTPAPTYLPPTNK 487
Score = 35.8 bits (81), Expect = 0.59
Identities = 25/75 (33%), Positives = 29/75 (38%), Gaps = 25/75 (33%)
Frame = +3
Query: 456 PRPALRACPPSRRCRCRWAPP------RPCPPPARRP-------------------PPWS 560
PRP L P R + PP RP PPP R P PP +
Sbjct: 610 PRPTLPPTKPPTRPPTTYLPPPSVRTTRPPPPPTRPPTKPPTTYLPPVTVRTTRATPPPT 669
Query: 561 RSTSPAPTSPPTSRR 605
R + PT PPT+RR
Sbjct: 670 RPPTRPPTYPPTTRR 684
Score = 35.4 bits (80), Expect = 0.78
Identities = 23/67 (34%), Positives = 27/67 (39%), Gaps = 15/67 (22%)
Frame = +3
Query: 450 PPPRPALRACPPSRRCRCRWAPPRPCPPPARRP---------------PPWSRSTSPAPT 584
PP RP PP R PP P PP + P PP +R + PT
Sbjct: 408 PPTRPPTTYLPPPT-VRTTRPPPPPTRPPTKPPTTYLPPVTVRTTRATPPPTRPPTRPPT 466
Query: 585 SPPTSRR 605
PPT+RR
Sbjct: 467 YPPTTRR 473
Score = 35.4 bits (80), Expect = 0.78
Identities = 20/53 (37%), Positives = 23/53 (42%), Gaps = 4/53 (7%)
Frame = +3
Query: 453 PPRPALRACPPSRR----CRCRWAPPRPCPPPARRPPPWSRSTSPAPTSPPTS 599
PP P PP+ + R PP PPP R PPP T P T PP +
Sbjct: 205 PPTPPPTYLPPTNKPLPPVTTRLPPP---PPPPRTPPPTRPPTRPPTTRPPAT 254
Score = 34.7 bits (78), Expect = 1.3
Identities = 34/117 (29%), Positives = 42/117 (35%), Gaps = 18/117 (15%)
Frame = +3
Query: 300 TCLSSSSPTASPSVASASTTTSRRRTTLRLRVLCCCALPTSL*SSSLAWAPPPRPALRAC 479
T ++ PT P+ T+RR TT L P + PRP L
Sbjct: 450 TTRATPPPTRPPTRPPTYPPTTRRLTTPAPTYLPPTNKPLPPVTVRTTVRTTPRPTLPPT 509
Query: 480 PPSRRCRCRWAPP------RPCPPPARRPPPWSRST------------SPAPTSPPT 596
P R + PP RP PPP RPP +T +P PT PPT
Sbjct: 510 KPPTRPPTTYLPPPTVRTTRP-PPPPTRPPTKPPTTYLPPVTVRTTRATPPPTRPPT 565
Score = 33.1 bits (74), Expect = 3.8
Identities = 19/52 (36%), Positives = 22/52 (41%)
Frame = +3
Query: 450 PPPRPALRACPPSRRCRCRWAPPRPCPPPARRPPPWSRSTSPAPTSPPTSRR 605
PPP P R PP+R P PP RPP + P P T+RR
Sbjct: 314 PPPPPPPRTPPPTRP---------PTKPPTTRPPATYLPPTNKPPPPVTTRR 356
Score = 32.7 bits (73), Expect = 5.0
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +3
Query: 450 PPPRPALRACPPSRRCRCRWAPPRPCPPPARRP-PPWSRSTSPAPTSPPT 596
PPPR PP+R R PP PP +P PP + P P SP T
Sbjct: 232 PPPRTPPPTRPPTRPPTTR--PPATYLPPTNKPLPPVTTRLPPPPPSPRT 279
Score = 32.7 bits (73), Expect = 5.0
Identities = 24/61 (39%), Positives = 26/61 (42%), Gaps = 12/61 (19%)
Frame = +3
Query: 450 PPPRPALRACPPSRRCRCRWAPPRPCP---PP---------ARRPPPWSRSTSPAPTSPP 593
PP RP R PP+R PP P P PP R PPP +P PT PP
Sbjct: 193 PPTRPPTR--PPTR-------PPTPPPTYLPPTNKPLPPVTTRLPPPPPPPRTPPPTRPP 243
Query: 594 T 596
T
Sbjct: 244 T 244
Score = 32.3 bits (72), Expect = 6.6
Identities = 39/128 (30%), Positives = 47/128 (36%), Gaps = 18/128 (14%)
Frame = +3
Query: 267 PTWPW*RCSSPTCLSSSSPTASPSVASASTT-------TSRRRTTLRLRVLCCCALPTSL 425
P P R PT + PT P T T+RR T R PT
Sbjct: 315 PPPPPPRTPPPTRPPTKPPTTRPPATYLPPTNKPPPPVTTRRPTPPPTRPP---PPPTRA 371
Query: 426 *SSSLAWAPPPRPALRACPPSRRCRCRWAPPRPCPPPAR---------RPPPWSRST--S 572
+ + + PP L P + R R PRP PPP + PPP R+T
Sbjct: 372 STPAPTYLPPTNKPLP--PVTVRTTVR-TTPRPTPPPTKPPTRPPTTYLPPPTVRTTRPP 428
Query: 573 PAPTSPPT 596
P PT PPT
Sbjct: 429 PPPTRPPT 436
Score = 32.0 bits (71), Expect = 8.6
Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 7/58 (12%)
Frame = +3
Query: 450 PPPRPALRACPPSRR----CRCRWAPPRPCP--PPARRPPPWSRSTSPAPT-SPPTSR 602
P RP PP+ + R PP P P PP RPP +T P T PPT++
Sbjct: 247 PTTRPPATYLPPTNKPLPPVTTRLPPPPPSPRTPPPTRPPTRPPTTRPPATYLPPTNK 304
>gb|AAF08808.1|AF192750_1 synapsin IIb [Lampetra fluviatilis]
Length = 586
Score = 46.6 bits (109), Expect = 3e-04
Identities = 41/128 (32%), Positives = 47/128 (36%), Gaps = 16/128 (12%)
Frame = +3
Query: 288 CSSPTCLSSSSPTASPSVASASTTTSRRRTTLRLRVLCCCALPTSL*SSSLAWAPPP--- 458
C+ T S P SPSVA T T+ R P +L PPP
Sbjct: 437 CNGSTPGSPQQPAPSPSVAQKQPTP-----TVPQRSASTDKAPAALQQQQHLQLPPPLHR 491
Query: 459 ----RPALRACPPSRRCRCRWA---------PPRPCPPPARRPPPWSRSTSPAPTSPPTS 599
R R+ RCR RWA P R P P R P SRS + +PT PT
Sbjct: 492 LSRSRSRTRSSTSRGRCRARWAAGTAPARPVPARRKPKPRRSGPCASRSQASSPTKAPTV 551
Query: 600 RRAASRGR 623
A S R
Sbjct: 552 DDARSAAR 559
>ref|NP_294632.1| hypothetical protein [Deinococcus radiodurans]
gi|7472345|pir||C75461 hypothetical protein -
Deinococcus radiodurans (strain R1)
gi|6458632|gb|AAF10488.1|AE001943_8 hypothetical protein
[Deinococcus radiodurans]
Length = 414
Score = 46.6 bits (109), Expect = 3e-04
Identities = 49/136 (36%), Positives = 61/136 (44%), Gaps = 32/136 (23%)
Frame = -3
Query: 616 LLAARL--EVGGLVGAGLVLLLHGGG---RRAGGGHGRGGAHLQRQRREGGQARSAGRGG 452
LL A L +VGG+ GAG + GGG R A GG G G A L ++RE GQ AGRG
Sbjct: 181 LLGAALTQQVGGVAGAGFL----GGGPHARLAVGGVGLGFALLLLRQREQGQRAGAGRGA 236
Query: 451 GAQANEDD-----------QSEVGNAQQH-------STRSRSVVRLRL---------VVV 353
G+Q + Q E+ A+QH + R RLRL V
Sbjct: 237 GSQVHPAQPRLGSRRVALGQVELRGAEQHHRVVGVDAAEQRGKGRLRLLGPPGAGLQVRQ 296
Query: 352 EAEATDGEAVGDELLR 305
A +G A+G LLR
Sbjct: 297 LRAAVEGVALGQGLLR 312
EST assemble image
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clone |
accession |
position |
| 1 |
CM090b01_r |
AV392320 |
1 |
371 |
| 2 |
HC092a10_r |
AV638884 |
15 |
410 |
| 3 |
CL55c08_r |
AV396025 |
114 |
666 |
| 4 |
CM084h09_r |
AV392634 |
162 |
491 |
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Chlamydomonas reinhardtii
Kazusa DNA Research Institute