KCC000685A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000685A_C01 KCC000685A_c01
atacgCTTCCGCGCTGAACCCCACGCATCCTAACGCGCCCAGCGCGTCCGCTTATCCGCT
CCTTTCATTATAACTTTCATGAGTAGCCAGGCTACACAGGAGCCGGTGCCCAGCTTCGAG
GAGGCCGCTCAGGGCCTGGGGCCTGAGGCCACTGGCCTCACATTGGCGGGAGGGCTGCAC
ACTGGGGGTTGACGAAAGAGCAGAATGGGCGGAGGAACCCCCCTTAATCCTTGGGCGCCA
GCATGGACGCCCAGACAGCCGCCCAGCATTAACGCTGGCGCCATTGCGGCGGTTCCATTA
CAAGTGGAACCTTTTGACTTGATGCGCCTGCCGGATGCAGTCGTGACTACGGTTGTATCG
TTTCTGAGCGCGCCGTCAGACGTGGTGCACTGTGCACTGGTCAGCAAGTCTCTGAGGCAG
CACACGCAGGATGCAGAACTGGTTTGCGACACCCGGCGGCTGCGTTCTTCCTCCCTGGAC
GCGGGGGGACCGGGTGACGAGAGCAAGAAGCGGGAGCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000685A_C01 KCC000685A_c01
         (518 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAB11331.1| hypothetical protein MLCB2052.33c [Mycobacterium...    37  0.12
dbj|BAB17153.1| P0698A04.14 [Oryza sativa (japonica cultivar-gro...    37  0.12
dbj|BAB40046.1| P0445D12.20 [Oryza sativa (japonica cultivar-gro...    37  0.20
dbj|BAB17155.1| P0698A04.16 [Oryza sativa (japonica cultivar-gro...    35  0.75
sp|P83410|LEC_ERYCG Lectin (ECL) gi|21730303|pdb|1GZ9|A Chain A,...    34  0.98

>emb|CAB11331.1| hypothetical protein MLCB2052.33c [Mycobacterium leprae]
          Length = 165

 Score = 37.4 bits (85), Expect = 0.12
 Identities = 26/80 (32%), Positives = 33/80 (40%)
 Frame = +1

Query: 172 GLHTGG*RKSRMGGGTPLNPWAPAWTPRQPPSINAGAIAAVPLQVEPFDLMRLPDAVVTT 351
           G+ T      R+G   PL  WA  W+ R P S+ A + A          LM  P    TT
Sbjct: 88  GVRTAWSPAHRIGDPRPLRLWATRWSTRTPASVPAQSGALAQYSYSQARLM--PPRCSTT 145

Query: 352 VVSFLSAPSDVVHCALVSKS 411
             S   +P D   CA+ S S
Sbjct: 146 TSSLRRSPPDTHTCAMSSVS 165

>dbj|BAB17153.1| P0698A04.14 [Oryza sativa (japonica cultivar-group)]
           gi|14090229|dbj|BAB55490.1| P0494A10.30 [Oryza sativa
           (japonica cultivar-group)]
          Length = 384

 Score = 37.4 bits (85), Expect = 0.12
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = +2

Query: 107 CPASRRPLRAWGLRPLASHWREGCTLGVDERAEWAEEPPLILGRQHGRP 253
           CPA+   L+ W L P   HW+E  TL V +   WA E    +G  H  P
Sbjct: 236 CPANEVKLKTWSLSPDFKHWKEETTLTVGD--SWASESFNEIGLPHVMP 282

>dbj|BAB40046.1| P0445D12.20 [Oryza sativa (japonica cultivar-group)]
           gi|14090359|dbj|BAB55517.1| P0037C04.4 [Oryza sativa
           (japonica cultivar-group)]
          Length = 472

 Score = 36.6 bits (83), Expect = 0.20
 Identities = 21/62 (33%), Positives = 29/62 (45%)
 Frame = +2

Query: 74  LS*VARLHRSRCPASRRPLRAWGLRPLASHWREGCTLGVDERAEWAEEPPLILGRQHGRP 253
           L+ +     + CPA+   L+ W L P   HW+E  TL V +   WA E    +G  H  P
Sbjct: 283 LALIGYCEEASCPANEVKLKTWSLSPDFKHWKEETTLTVGD--IWASESFNQMGLPHVLP 340

Query: 254 DS 259
            S
Sbjct: 341 FS 342

>dbj|BAB17155.1| P0698A04.16 [Oryza sativa (japonica cultivar-group)]
           gi|14090231|dbj|BAB55492.1| P0494A10.32 [Oryza sativa
           (japonica cultivar-group)]
          Length = 670

 Score = 34.7 bits (78), Expect = 0.75
 Identities = 21/57 (36%), Positives = 28/57 (48%)
 Frame = +2

Query: 107 CPASRRPLRAWGLRPLASHWREGCTLGVDERAEWAEEPPLILGRQHGRPDSRPALTL 277
           CP +   L+ W L P   HW+E  TL V +   WA E    +G  H  P S P L++
Sbjct: 299 CPENEVKLKTWSLSPDFKHWKEETTLTVGD--IWASESFNQMGLPHVLPFS-PVLSV 352

>sp|P83410|LEC_ERYCG Lectin (ECL) gi|21730303|pdb|1GZ9|A Chain A, High-Resolution
           Crystal Structure Of Erythrina Cristagalli Lectin In
           Complex With 2'-Alpha-L-Fucosyllactose
           gi|21730304|pdb|1GZC|A Chain A, High-Resolution Crystal
           Structure Of Erythrina Cristagalli Lectin In Complex
           With Lactose
          Length = 239

 Score = 34.3 bits (77), Expect = 0.98
 Identities = 26/91 (28%), Positives = 41/91 (44%)
 Frame = +1

Query: 244 WTPRQPPSINAGAIAAVPLQVEPFDLMRLPDAVVTTVVSFLSAPSDVVHCALVSKSLRQH 423
           W P Q P I     +   ++ +PF   +L +  V  VV    APS ++H  LV  S    
Sbjct: 135 WDPPQVPHIGIDVNSIRSIKTQPF---QLDNGQVANVVIKYDAPSKILHVVLVYPSSGAI 191

Query: 424 TQDAELVCDTRRLRSSSLDAGGPGDESKKRE 516
              AE+V D +++    +D G  G    +R+
Sbjct: 192 YTIAEIV-DVKQVLPDWVDVGLSGATGAQRD 221



EST assemble image


clone accession position
1 CL55b07_r AV396037 1 518
2 LCL084d02_r AV630789 6 457




Chlamydomonas reinhardtii
Kazusa DNA Research Institute