KCC000682A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000682A_C01 KCC000682A_c01
ggtggatagtgggtgggacggggcctgcgcacgtgagatcttcgcaacctaccaattgca
cgttgccacagccgtctttcCCTTAAACTTTTTGCGTTGTATTGTTGGTCTTCTGTCGCT
CAATACTGCTGTGAACTCGTGCGTGTCTTTCAAATCTGTATGGGTGTTGCAATTTGTTGA
GTGCAAAGCCAGTCACAAACCTGGCGACGGGTAGGAGCTGCTTTTGGCGTGGGGGTGTTA
GCTGATGTGTGCGTGCCAGAACGCGGATGACTGGCTGGCTGGTGGGTCGCTGGCTGGCTG
GCAGCGCGTCAAAGGCGCCTATGCGTATCGATTTGTTGTCTGGTGGGTGTTTAGCTGTAT
TAGATCTCAAATTTGGTAGGTAGGGGCAGGGGCAGGGGGCAGGAACTTGTGTGGCAGCTG
AGGGCGTCGTGGTGTCTTGTGGATCGCCTGCTGACGACAGTTGGCGACTTGCGGCCACCG
CAGCGCGCTTCAGCACCGTTGCGCTCGTTCGCTTAGGGATGTTCCGACTGCAGAAGTGGT
TAGATGTTGGTAGGCAGGTGGATCGGGGATGGACACCGAAAGCATTGAGATGGGTGACCT
AATGATTAAAAAGGCTGAGTTGTGCGAGACCACGATGCACGATGGTGCCTGTCGCGGCAG
CCCGCATGAGACATACAGTGCTTGCGAGTGCTGTGCGCGTTCACGCCGGCAGAACAGACG
TCTTCATTATGCGCGTGCGCTTCTGCTGAGCAGTGGTGGTGCTGCTGGGCGGAGTGCCTG
TGCTGAGGCTGTGGCTGGGGCTGCTGCGGAGAAATGGAGGGAGGCGAGCAGCAGTCAGGC
TCATTTACTGGATTCAGGAGCTGCCACAGGGCATGTGTGTTTCTGTGTGTCCGCTTGGTG
T


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000682A_C01 KCC000682A_c01
         (901 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophil...    44  0.003
ref|XP_320734.1| ENSANGP00000020313 [Anopheles gambiae] gi|21288...    39  0.091
sp|Q63943|MEFD_MOUSE Myocyte-specific enhancer factor 2D gi|1363...    37  0.35
ref|XP_310405.1| ENSANGP00000005621 [Anopheles gambiae] gi|21293...    37  0.35
ref|NP_598426.1| myocyte enhancer factor 2D [Mus musculus] gi|15...    37  0.35

>ref|NP_523475.2| Salivary gland secretion 1 CG3047-PA [Drosophila melanogaster]
            gi|28380257|gb|AAF50957.3| CG3047-PA [Drosophila
            melanogaster]
          Length = 1225

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 41/148 (27%), Positives = 57/148 (37%), Gaps = 4/148 (2%)
 Frame = -1

Query: 817  PFLRSSPSHSLSTGTPPSSTTTAQQKRTRIMKTSVLPA*TRTALASTVCLMRAAATGTIV 638
            P   ++PS S  T T P STTT    R     T+   + T+T+  +       + T T  
Sbjct: 979  PRSTTTPSTSRPTTTTPRSTTTTSTSRPT---TTTPRSTTKTSTCAPTTTTPRSTTTTTT 1035

Query: 637  HRGLAQLSLFNH*VTHLNAFGVHPRSTCLPTSNHFCSRNIPKRTSATVLKRAAVAASRQL 458
             R            T        PRST  P ++   +   P+ T+ T   R      R  
Sbjct: 1036 SRPTTTTPRSTTTTTTSRPTTTTPRSTTTPCTSR-PTTTTPRSTTTTTTSRPTTTTPRST 1094

Query: 457  SSAGDPQDTTTPSAA----TQVPAPCPC 386
            ++   P  TTTPSA+    T    PCPC
Sbjct: 1095 TT---PCPTTTPSASPTRTTTTRRPCPC 1119

>ref|XP_320734.1| ENSANGP00000020313 [Anopheles gambiae] gi|21288440|gb|EAA00761.1|
           ENSANGP00000020313 [Anopheles gambiae str. PEST]
          Length = 246

 Score = 39.3 bits (90), Expect = 0.091
 Identities = 17/39 (43%), Positives = 18/39 (45%)
 Frame = -3

Query: 842 EPDCCSPPSISPQQPQPQPQHRHSAQQHHHCSAEAHAHN 726
           EP CC  P   P  P P P H H A  HHH     H H+
Sbjct: 195 EPSCCYMPLPPPPPPPPPPAHFHHAHAHHH-----HGHS 228

>sp|Q63943|MEFD_MOUSE Myocyte-specific enhancer factor 2D gi|1363258|pir||A56201
           transcription factor MEF2D isoform 1a - mouse
           gi|545520|gb|AAB29973.1| myocyte-specific
           enhancer-binding factor 2; MEF2 [Mus sp.]
          Length = 514

 Score = 37.4 bits (85), Expect = 0.35
 Identities = 16/36 (44%), Positives = 17/36 (46%)
 Frame = -3

Query: 866 WQLLNPVNEPDCCSPPSISPQQPQPQPQHRHSAQQH 759
           WQ   P  +P    PP   PQ PQPQPQ     Q H
Sbjct: 364 WQQPQPPQQPQPPQPPQSQPQPPQPQPQQPPQQQPH 399

>ref|XP_310405.1| ENSANGP00000005621 [Anopheles gambiae] gi|21293852|gb|EAA05997.1|
           ENSANGP00000005621 [Anopheles gambiae str. PEST]
          Length = 976

 Score = 37.4 bits (85), Expect = 0.35
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -3

Query: 791 QPQHRHSAQQHHHCSAEAHAHNEDVCSAGVNAHSTRKHCMSHAGCRDRHHRAS 633
           + +H  S+ +HHH S       +D         S+R H   H+  RDRH  +S
Sbjct: 185 ETKHHSSSSKHHHSSTSDADRKKDSSHRNKEKESSRSHSSKHSSDRDRHRSSS 237

>ref|NP_598426.1| myocyte enhancer factor 2D [Mus musculus]
           gi|15029710|gb|AAH11070.1| Myocyte enhancer factor 2D
           [Mus musculus]
          Length = 507

 Score = 37.4 bits (85), Expect = 0.35
 Identities = 16/36 (44%), Positives = 17/36 (46%)
 Frame = -3

Query: 866 WQLLNPVNEPDCCSPPSISPQQPQPQPQHRHSAQQH 759
           WQ   P  +P    PP   PQ PQPQPQ     Q H
Sbjct: 357 WQQPQPPQQPQPPQPPQSQPQPPQPQPQQPPQQQPH 392



EST assemble image


clone accession position
1 LC050b11_r AV622473 1 531
2 CM021d10_r AV387950 110 689
3 CL55a06_r AV396051 400 901
4 MX217f02_r BP090018 400 876




Chlamydomonas reinhardtii
Kazusa DNA Research Institute