KCC000676A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000676A_C01 KCC000676A_c01
CGACTGTCTAACTCACAGGGTTAGCGGGAGTGTCGTGAAACTGGTGCTCCGTCCCCACGC
CTGTAAGGGGATACAGGTAGTGCAATACACGAATAGTGAGCAGTTTTTATTGACCGTCAG
CACGTTTCCTCACTGGTAGAGTGAAGGATGCATTCCAGCCTTTTGGGTGCCCCTGTGCGG
GGCTTCACGCCCTTTAAGAAGCATAAGCAGGGCGTGCAGGCGCGTGTGGTGCTGCCGCGC
GCTGCCCAGCCGCTCCGCCTTGCGGGTGTGGTCGCCAATGCCGGAGCGAGCGGCTCGCGC
AACCTTGTTCGCGCGAGCGCGGCCGCGCCCGCAGCGACAACGGCTGCGCCTGCGTCTGCT
GCCGCGGTCGCGACCACTCCTTCCAACGGCGCTGCGCCAGCTCGCAGCGGCCTTGTGAAG
GATGCCCCGTCGTTCCAGGAGGCGATTACCAAGCTGCAGGAGTACTGGGCGTCCGTGGGC
TGCGCCATCTGGCTGCCGCACAACACGGAGGTGGGCGCGGGCACCATGAACCCCGCCACC
TTCCTTCGTGTGCTGGGCCCCGAGCCCTGGAACGTGGCCTACCCGGAGCCCTCCATCCGC
CCCGACGACTCGCGCTACGGCGACAACCCCAACCGCCTGCAGCGCCACACCCAGTTCCAG
GTGATTCTGAAGCCGGACCCCGGCAATGCGCAGGAGCTGTACCTGGGGTCGCTGGAGGCG
CTGGGCATTGACACCAAGAGCCAAGACGTGCGCTTCGTGGAGGACAACTGGGAGAGCCCG
GT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000676A_C01 KCC000676A_c01
         (782 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_850670.1| glycine--tRNA ligase precursor, chloroplast (ed...   213  3e-54
pir||T06672 probable aminoacyl-t-RNA synthetase (EC 6.1.1.-) - A...   213  3e-54
pir||T48850 glycine-tRNA ligase (EC 6.1.1.14), chloroplast [impo...   213  3e-54
gb|AAM97079.1| glycine--tRNA ligase precursor, chloroplast (edd1...   213  3e-54
ref|NP_190394.2| glycine--tRNA ligase precursor, chloroplast (ed...   213  3e-54

>ref|NP_850670.1| glycine--tRNA ligase precursor, chloroplast (edd1) [Arabidopsis
           thaliana]
          Length = 1063

 Score =  213 bits (542), Expect = 3e-54
 Identities = 96/118 (81%), Positives = 107/118 (90%)
 Frame = +1

Query: 427 PSFQEAITKLQEYWASVGCAIWLPHNTEVGAGTMNPATFLRVLGPEPWNVAYPEPSIRPD 606
           P+FQ+AI +LQEYWASVGCA+  P NTEVGAGTMNP TFLRVLGPEPWNVAY EPSIRPD
Sbjct: 71  PTFQQAIQRLQEYWASVGCAVMQPSNTEVGAGTMNPCTFLRVLGPEPWNVAYVEPSIRPD 130

Query: 607 DSRYGDNPNRLQRHTQFQVILKPDPGNAQELYLGSLEALGIDTKSQDVRFVEDNWESP 780
           DSRYG+NPNRLQRHTQFQVILKPDPGN+Q+L++ SL ALGID  + D+RFVEDNWESP
Sbjct: 131 DSRYGENPNRLQRHTQFQVILKPDPGNSQQLFINSLSALGIDVTAHDIRFVEDNWESP 188

>pir||T06672 probable aminoacyl-t-RNA synthetase (EC 6.1.1.-) - Arabidopsis
           thaliana gi|4678317|emb|CAB41128.1| aminoacyl-t-RNA
           synthetase [Arabidopsis thaliana]
          Length = 1067

 Score =  213 bits (542), Expect = 3e-54
 Identities = 96/118 (81%), Positives = 107/118 (90%)
 Frame = +1

Query: 427 PSFQEAITKLQEYWASVGCAIWLPHNTEVGAGTMNPATFLRVLGPEPWNVAYPEPSIRPD 606
           P+FQ+AI +LQEYWASVGCA+  P NTEVGAGTMNP TFLRVLGPEPWNVAY EPSIRPD
Sbjct: 71  PTFQQAIQRLQEYWASVGCAVMQPSNTEVGAGTMNPCTFLRVLGPEPWNVAYVEPSIRPD 130

Query: 607 DSRYGDNPNRLQRHTQFQVILKPDPGNAQELYLGSLEALGIDTKSQDVRFVEDNWESP 780
           DSRYG+NPNRLQRHTQFQVILKPDPGN+Q+L++ SL ALGID  + D+RFVEDNWESP
Sbjct: 131 DSRYGENPNRLQRHTQFQVILKPDPGNSQQLFINSLSALGIDVTAHDIRFVEDNWESP 188

>pir||T48850 glycine-tRNA ligase (EC 6.1.1.14), chloroplast [imported] -
           Arabidopsis thaliana gi|2654226|emb|CAA05843.1|
           aminoacyl-t-RNA synthetase [Arabidopsis thaliana]
          Length = 1067

 Score =  213 bits (542), Expect = 3e-54
 Identities = 96/118 (81%), Positives = 107/118 (90%)
 Frame = +1

Query: 427 PSFQEAITKLQEYWASVGCAIWLPHNTEVGAGTMNPATFLRVLGPEPWNVAYPEPSIRPD 606
           P+FQ+AI +LQEYWASVGCA+  P NTEVGAGTMNP TFLRVLGPEPWNVAY EPSIRPD
Sbjct: 71  PTFQQAIQRLQEYWASVGCAVMQPSNTEVGAGTMNPCTFLRVLGPEPWNVAYVEPSIRPD 130

Query: 607 DSRYGDNPNRLQRHTQFQVILKPDPGNAQELYLGSLEALGIDTKSQDVRFVEDNWESP 780
           DSRYG+NPNRLQRHTQFQVILKPDPGN+Q+L++ SL ALGID  + D+RFVEDNWESP
Sbjct: 131 DSRYGENPNRLQRHTQFQVILKPDPGNSQQLFINSLSALGIDVTAHDIRFVEDNWESP 188

>gb|AAM97079.1| glycine--tRNA ligase precursor, chloroplast (edd1) [Arabidopsis
           thaliana]
          Length = 1067

 Score =  213 bits (542), Expect = 3e-54
 Identities = 96/118 (81%), Positives = 107/118 (90%)
 Frame = +1

Query: 427 PSFQEAITKLQEYWASVGCAIWLPHNTEVGAGTMNPATFLRVLGPEPWNVAYPEPSIRPD 606
           P+FQ+AI +LQEYWASVGCA+  P NTEVGAGTMNP TFLRVLGPEPWNVAY EPSIRPD
Sbjct: 71  PTFQQAIQRLQEYWASVGCAVMQPSNTEVGAGTMNPCTFLRVLGPEPWNVAYVEPSIRPD 130

Query: 607 DSRYGDNPNRLQRHTQFQVILKPDPGNAQELYLGSLEALGIDTKSQDVRFVEDNWESP 780
           DSRYG+NPNRLQRHTQFQVILKPDPGN+Q+L++ SL ALGID  + D+RFVEDNWESP
Sbjct: 131 DSRYGENPNRLQRHTQFQVILKPDPGNSQQLFINSLSALGIDVTAHDIRFVEDNWESP 188

>ref|NP_190394.2| glycine--tRNA ligase precursor, chloroplast (edd1) [Arabidopsis
           thaliana]
          Length = 1064

 Score =  213 bits (542), Expect = 3e-54
 Identities = 96/118 (81%), Positives = 107/118 (90%)
 Frame = +1

Query: 427 PSFQEAITKLQEYWASVGCAIWLPHNTEVGAGTMNPATFLRVLGPEPWNVAYPEPSIRPD 606
           P+FQ+AI +LQEYWASVGCA+  P NTEVGAGTMNP TFLRVLGPEPWNVAY EPSIRPD
Sbjct: 71  PTFQQAIQRLQEYWASVGCAVMQPSNTEVGAGTMNPCTFLRVLGPEPWNVAYVEPSIRPD 130

Query: 607 DSRYGDNPNRLQRHTQFQVILKPDPGNAQELYLGSLEALGIDTKSQDVRFVEDNWESP 780
           DSRYG+NPNRLQRHTQFQVILKPDPGN+Q+L++ SL ALGID  + D+RFVEDNWESP
Sbjct: 131 DSRYGENPNRLQRHTQFQVILKPDPGNSQQLFINSLSALGIDVTAHDIRFVEDNWESP 188



EST assemble image


clone accession position
1 CL54c06_r AV396159 1 130
2 HCL063d02_r AV643077 1 456
3 CL71g03_r AV396885 294 782




Chlamydomonas reinhardtii
Kazusa DNA Research Institute