Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000670A_C03 KCC000670A_c03
(984 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD55569.1|AF110787_1 light harvesting complex a protein [Vol... 110 1e-47
gb|AAL87738.1|AF244524_1 chlorophyll a/b-binding protein [Chlamy... 130 4e-29
pir||S72223 light harvesting complex A protein precursor - Volvo... 57 2e-18
ref|NP_190331.3| light-harvesting chlorophyll a/b binding protei... 47 2e-13
ref|NP_175137.1| light-harvesting chlorophyll a/b binding protei... 54 3e-13
>gb|AAD55569.1|AF110787_1 light harvesting complex a protein [Volvox carteri f. nagariensis]
Length = 214
Score = 110 bits (275), Expect(2) = 1e-47
Identities = 60/99 (60%), Positives = 66/99 (66%)
Frame = +3
Query: 195 DPLGLVPGRGAASSGMLRPEKTNGPLVPCMARGLVSWARSCWAVTPAWWEAGAKEYDIPA 374
DPLGL G EKTNG G++ + VTP+W+EAGAKEYDIP+
Sbjct: 52 DPLGLGQDEGRLK-WYAEAEKTNGRWAMMAVTGILG--QELLGVTPSWYEAGAKEYDIPS 108
Query: 375 QALTPIEFIVMGFLEIKRYQCFKQTGTSGFINSFPFDPA 491
LT IEFIVMGFLEIKRYQ FK TGTSGFINSFPFDPA
Sbjct: 109 TPLTAIEFIVMGFLEIKRYQGFKTTGTSGFINSFPFDPA 147
Score = 103 bits (256), Expect(2) = 1e-47
Identities = 48/55 (87%), Positives = 51/55 (92%)
Frame = +1
Query: 520 TKEVKNGRLAMVAFIGFCVQALATRTQPIEGLTAHLADPFGKNITYYLTHLPETL 684
TKEVKNGRLAMVAF+GF VQAL TRTQPIEGLT HL+DPFGKNITYY+THLPE L
Sbjct: 156 TKEVKNGRLAMVAFVGFAVQALVTRTQPIEGLTKHLSDPFGKNITYYVTHLPEVL 210
Score = 72.8 bits (177), Expect = 9e-12
Identities = 51/97 (52%), Positives = 56/97 (57%)
Frame = +2
Query: 41 AAKSQVAAGPAVPPSAGQRVVAACVRLAPPGCPA*TPLAHLKGALAGDNGFRPSGPGART 220
AAKSQVA G P + V AA R P P +P AHLKG+LAGD+GF P G G +
Sbjct: 3 AAKSQVALGRRAPVRGQRAVCAATAR--PTWLPGLSPPAHLKGSLAGDSGFDPLGLG-QD 59
Query: 221 RCRLKWYAEA*EDQRPAGAMHGPWPGILGQELLGCDP 331
RLKWYAEA E AM GILGQELLG P
Sbjct: 60 EGRLKWYAEA-EKTNGRWAMMAV-TGILGQELLGVTP 94
>gb|AAL87738.1|AF244524_1 chlorophyll a/b-binding protein [Chlamydomonas reinhardtii]
Length = 222
Score = 130 bits (326), Expect = 4e-29
Identities = 101/216 (46%), Positives = 111/216 (50%), Gaps = 9/216 (4%)
Frame = +1
Query: 73 RAPVRGSARCRCLRPSRPTWLPGLNPPGPPEGRSGR*QRLPTLWAWCQDEVPPQVVC*GL 252
RAPVRG R +RPTWLPGLNPP +G L QDE +
Sbjct: 13 RAPVRGQ-RVVAAASARPTWLPGLNPPAHLKGALAGDNGFDPLGLG-QDEGRLKWYA-EA 69
Query: 253 RRPTARWCHAWPVAWYPGPGAAGL*PPLGGRLALRSTTSLPRL*PP-------LSSS*WA 411
+ RW VA G G+ P A L P L +
Sbjct: 70 EKTNGRWA-MMAVAGILGQELLGVTPAWWEAGAKEYDIPAQALTPIEFIVMGFLEIKRYQ 128
Query: 412 SWRLSATSA--SSRPALPASSTPSPSTPLWHELPVHGPTKEVKNGRLAMVAFIGFCVQAL 585
++ + TS +S P PA SPS TKEVKNGRLAMVAFIGFCVQAL
Sbjct: 129 GFKQTGTSGFINSFPFDPAGMN-SPSMA----------TKEVKNGRLAMVAFIGFCVQAL 177
Query: 586 ATRTQPIEGLTAHLADPFGKNITYYLTHLPETLGSA 693
ATRTQPIEGLTAHLADPFGKNITYYLTHLPETLGSA
Sbjct: 178 ATRTQPIEGLTAHLADPFGKNITYYLTHLPETLGSA 213
Score = 125 bits (315), Expect = 8e-28
Identities = 67/99 (67%), Positives = 70/99 (70%)
Frame = +3
Query: 195 DPLGLVPGRGAASSGMLRPEKTNGPLVPCMARGLVSWARSCWAVTPAWWEAGAKEYDIPA 374
DPLGL G EKTNG G++ + VTPAWWEAGAKEYDIPA
Sbjct: 52 DPLGLGQDEGRLK-WYAEAEKTNGRWAMMAVAGILG--QELLGVTPAWWEAGAKEYDIPA 108
Query: 375 QALTPIEFIVMGFLEIKRYQCFKQTGTSGFINSFPFDPA 491
QALTPIEFIVMGFLEIKRYQ FKQTGTSGFINSFPFDPA
Sbjct: 109 QALTPIEFIVMGFLEIKRYQGFKQTGTSGFINSFPFDPA 147
Score = 77.4 bits (189), Expect = 3e-13
Identities = 56/97 (57%), Positives = 57/97 (58%)
Frame = +2
Query: 41 AAKSQVAAGPAVPPSAGQRVVAACVRLAPPGCPA*TPLAHLKGALAGDNGFRPSGPGART 220
AAKSQVA G P GQRVVAA P P P AHLKGALAGDNGF P G G +
Sbjct: 3 AAKSQVALGRRAPVR-GQRVVAAA-SARPTWLPGLNPPAHLKGALAGDNGFDPLGLG-QD 59
Query: 221 RCRLKWYAEA*EDQRPAGAMHGPWPGILGQELLGCDP 331
RLKWYAEA E AM GILGQELLG P
Sbjct: 60 EGRLKWYAEA-EKTNGRWAMMAV-AGILGQELLGVTP 94
>pir||S72223 light harvesting complex A protein precursor - Volvox carteri
gi|732534|gb|AAB40979.1| light harvesting complex a
Length = 264
Score = 57.0 bits (136), Expect(3) = 2e-18
Identities = 25/44 (56%), Positives = 31/44 (69%)
Frame = +1
Query: 520 TKEVKNGRLAMVAFIGFCVQALATRTQPIEGLTAHLADPFGKNI 651
TKE+KNGRLAM+AF GF QA T T P++ L HLADP+ +
Sbjct: 213 TKEIKNGRLAMLAFAGFAAQAYTTGTTPLKNLATHLADPWATTV 256
Score = 40.8 bits (94), Expect(3) = 2e-18
Identities = 22/42 (52%), Positives = 25/42 (59%)
Frame = +2
Query: 125 PPGCPA*TPLAHLKGALAGDNGFRPSGPGARTRCRLKWYAEA 250
P GCPA T +L G L GD GF P GA +LKWYA+A
Sbjct: 59 PAGCPAATLPGYLDGTLPGDFGFDPLYLGAEP-SKLKWYAQA 99
Score = 37.4 bits (85), Expect(3) = 2e-18
Identities = 14/42 (33%), Positives = 28/42 (66%)
Frame = +3
Query: 333 AWWEAGAKEYDIPAQALTPIEFIVMGFLEIKRYQCFKQTGTS 458
AW++AG +Y PA +L ++ ++ + E++RYQ F + G++
Sbjct: 133 AWYDAGKFQYFAPASSLFGVQMLLFAWAELRRYQDFVKPGSA 174
>ref|NP_190331.3| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana] gi|115385|sp|P27521|CB24_ARATH Chlorophyll A-B
binding protein 4, chloroplast precursor (LHCI type III
CAB-4) (LHCP) gi|11277628|pir||T45707 CHLOROPHYLL A-B
BINDING PROTEIN 4 PRECURSOR homolog - Arabidopsis
thaliana gi|166646|gb|AAA32760.1| light-harvesting
chlorophyll a/b binding protein
gi|6522530|emb|CAB61973.1| CHLOROPHYLL A-B BINDING
PROTEIN 4 PRECURSOR homolog [Arabidopsis thaliana]
gi|20260362|gb|AAM13079.1| chlorophyll A-B binding
protein 4 precursor homolog [Arabidopsis thaliana]
gi|21554365|gb|AAM63472.1| chlorophyll a-b binding
protein 4 precursor homolog [Arabidopsis thaliana]
gi|23197770|gb|AAN15412.1| chlorophyll A-B binding
protein 4 precursor homolog [Arabidopsis thaliana]
Length = 251
Score = 47.4 bits (111), Expect(3) = 2e-13
Identities = 23/43 (53%), Positives = 28/43 (64%)
Frame = +1
Query: 523 KEVKNGRLAMVAFIGFCVQALATRTQPIEGLTAHLADPFGKNI 651
KE+ NGRLAM+AF+GF VQ T P E L HL+DP+ I
Sbjct: 204 KELANGRLAMLAFLGFVVQHNVTGKGPFENLLQHLSDPWHNTI 246
Score = 38.9 bits (89), Expect(3) = 2e-13
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 330 PAWWEAGAKEYDIPAQALTPIEFIVMGFLEIKRYQCFKQTGT 455
P W++AG ++Y + L IEFI+ ++EI+R+Q K G+
Sbjct: 125 PEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGS 166
Score = 31.6 bits (70), Expect(3) = 2e-13
Identities = 16/31 (51%), Positives = 20/31 (63%)
Frame = +2
Query: 158 HLKGALAGDNGFRPSGPGARTRCRLKWYAEA 250
+L G+LAGDNGF P G A LKW+ +A
Sbjct: 66 YLTGSLAGDNGFDPLGL-AEDPENLKWFVQA 95
>ref|NP_175137.1| light-harvesting chlorophyll a/b binding protein [Arabidopsis
thaliana] gi|30693978|ref|NP_849778.1| light-harvesting
chlorophyll a/b binding protein [Arabidopsis thaliana]
gi|25299021|pir||F96510 light-harvesting complex protein
[imported] - Arabidopsis thaliana
gi|12321000|gb|AAG50618.1|AC083835_3 light-harvesting
complex protein [Arabidopsis thaliana]
gi|17063199|gb|AAL32974.1| At1g45474/F2G19.4
[Arabidopsis thaliana] gi|19699116|gb|AAL90924.1|
At1g45474/F2G19.4 [Arabidopsis thaliana]
Length = 256
Score = 54.3 bits (129), Expect(2) = 3e-13
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +1
Query: 523 KEVKNGRLAMVAFIGFCVQALATRTQPIEGLTAHLADPFGKNI 651
KE+KNGRLAM+A +GF VQA T T PI+ L HL++P+ K I
Sbjct: 205 KEIKNGRLAMMAMLGFFVQASVTHTGPIDNLVEHLSNPWHKTI 247
Score = 43.5 bits (101), Expect(2) = 3e-13
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Frame = +3
Query: 330 PAWWEAGAKEYDIPA-QALTPIEFIVMGFLEIKRYQCFKQTGTSGFINSFPF 482
P W+EAGA ++D + + L ++F++MGF E KRY F G+ SF F
Sbjct: 117 PVWYEAGAVKFDFASTKTLIVVQFLLMGFAETKRYMDFVSPGSQAKEGSFFF 168
