Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000668A_C01 KCC000668A_c01
(365 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197776.1| cleavage and polyadenylation specificity factor... 58 4e-08
gb|AAF82809.1|AF283277_1 polyadenylation cleavage/specificity fa... 57 5e-08
dbj|BAC35756.1| unnamed protein product [Mus musculus] 54 5e-07
ref|XP_216766.2| similar to cleavage and polyadenylation specifi... 54 5e-07
ref|NP_058552.1| cleavage and polyadenylation specific factor 2;... 54 5e-07
>ref|NP_197776.1| cleavage and polyadenylation specificity factor [Arabidopsis
thaliana] gi|18203240|sp|Q9LKF9|CPSB_ARATH Cleavage and
polyadenylation specificity factor, 100 kDa subunit
(CPSF 100 kDa subunit) gi|10176855|dbj|BAB10061.1|
cleavage and polyadenylation specificity factor
[Arabidopsis thaliana] gi|14334618|gb|AAK59487.1|
putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana] gi|28393921|gb|AAO42368.1|
putative cleavage and polyadenylation specificity factor
[Arabidopsis thaliana]
Length = 739
Score = 57.8 bits (138), Expect = 4e-08
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = +2
Query: 206 METVVRYTPLCGVGEDSPLCSLWEIDDYTLLLDCGWDDSFDVAQLDPVLKV 358
M T V+ TPLCGV ++PL L ID + L+DCGW+D FD + L+P+ +V
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRV 51
>gb|AAF82809.1|AF283277_1 polyadenylation cleavage/specificity factor 100 kDa subunit
[Arabidopsis thaliana]
Length = 739
Score = 57.4 bits (137), Expect = 5e-08
Identities = 25/51 (49%), Positives = 35/51 (68%)
Frame = +2
Query: 206 METVVRYTPLCGVGEDSPLCSLWEIDDYTLLLDCGWDDSFDVAQLDPVLKV 358
M T V+ TPLCGV ++PL L ID + L+DCGW+D FD + L+P+ +V
Sbjct: 1 MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLPRV 51
>dbj|BAC35756.1| unnamed protein product [Mus musculus]
Length = 296
Score = 53.9 bits (128), Expect = 5e-07
Identities = 22/50 (44%), Positives = 34/50 (68%)
Frame = +2
Query: 206 METVVRYTPLCGVGEDSPLCSLWEIDDYTLLLDCGWDDSFDVAQLDPVLK 355
M ++++ T L GV E+S LC L ++D++ LLDCGWD+ F V +D + K
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRK 50
>ref|XP_216766.2| similar to cleavage and polyadenylation specificity factor [Rattus
norvegicus]
Length = 782
Score = 53.9 bits (128), Expect = 5e-07
Identities = 22/50 (44%), Positives = 34/50 (68%)
Frame = +2
Query: 206 METVVRYTPLCGVGEDSPLCSLWEIDDYTLLLDCGWDDSFDVAQLDPVLK 355
M ++++ T L GV E+S LC L ++D++ LLDCGWD+ F V +D + K
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRK 50
>ref|NP_058552.1| cleavage and polyadenylation specific factor 2; cleavage and
polyadenylation specificity factor; cleavage and
polyadenylation specific factor 2, 100kD subunit [Mus
musculus] gi|18202027|sp|O35218|CPSB_MOUSE Cleavage and
polyadenylation specificity factor, 100 kDa subunit
(CPSF 100 kDa subunit) gi|2331036|gb|AAB66830.1|
cleavage and polyadenylation specificity factor [Mus
musculus] gi|15489017|gb|AAH13628.1| Cleavage and
polyadenylation specific factor 2 [Mus musculus]
Length = 782
Score = 53.9 bits (128), Expect = 5e-07
Identities = 22/50 (44%), Positives = 34/50 (68%)
Frame = +2
Query: 206 METVVRYTPLCGVGEDSPLCSLWEIDDYTLLLDCGWDDSFDVAQLDPVLK 355
M ++++ T L GV E+S LC L ++D++ LLDCGWD+ F V +D + K
Sbjct: 1 MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRK 50