KCC000668A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000668A_C01 KCC000668A_c01
CTTCAGCGAGCTGTGTCTTTTGCGCAAGTAGTTTTGCCAGGTTTCTTGCAGTGCTTGTTT
TACGCGATCCAGCACACTTTACATGAGCATACAGTAATGTAGACAATATATCGTTGAGAC
CTCATGACAATACAAACACACGAGCGCGCGGAAAGGGGCGACGCGCCGGGAAGGTCGAAG
CGCTGAACTATAGCCTAGCGAAAGCATGGAGACAGTTGTCAGATACACGCCGCTATGCGG
CGTTGGCGAGGACTCGCCGCTGTGCTCACTGTGGGAGATTGACGACTACACCCTCCTCCT
GGACTGCGGCTGGGACGACAGCTTTGATGTTGCGCAGCTGGACCCAGTGCTCAAGGTGCT
CCCGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000668A_C01 KCC000668A_c01
         (365 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_197776.1| cleavage and polyadenylation specificity factor...    58  4e-08
gb|AAF82809.1|AF283277_1 polyadenylation cleavage/specificity fa...    57  5e-08
dbj|BAC35756.1| unnamed protein product [Mus musculus]                 54  5e-07
ref|XP_216766.2| similar to cleavage and polyadenylation specifi...    54  5e-07
ref|NP_058552.1| cleavage and polyadenylation specific factor 2;...    54  5e-07

>ref|NP_197776.1| cleavage and polyadenylation specificity factor [Arabidopsis
           thaliana] gi|18203240|sp|Q9LKF9|CPSB_ARATH Cleavage and
           polyadenylation specificity factor, 100 kDa subunit
           (CPSF 100 kDa subunit) gi|10176855|dbj|BAB10061.1|
           cleavage and polyadenylation specificity factor
           [Arabidopsis thaliana] gi|14334618|gb|AAK59487.1|
           putative cleavage and polyadenylation specificity factor
           [Arabidopsis thaliana] gi|28393921|gb|AAO42368.1|
           putative cleavage and polyadenylation specificity factor
           [Arabidopsis thaliana]
          Length = 739

 Score = 57.8 bits (138), Expect = 4e-08
 Identities = 25/51 (49%), Positives = 35/51 (68%)
 Frame = +2

Query: 206 METVVRYTPLCGVGEDSPLCSLWEIDDYTLLLDCGWDDSFDVAQLDPVLKV 358
           M T V+ TPLCGV  ++PL  L  ID +  L+DCGW+D FD + L+P+ +V
Sbjct: 1   MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLSRV 51

>gb|AAF82809.1|AF283277_1 polyadenylation cleavage/specificity factor 100 kDa subunit
           [Arabidopsis thaliana]
          Length = 739

 Score = 57.4 bits (137), Expect = 5e-08
 Identities = 25/51 (49%), Positives = 35/51 (68%)
 Frame = +2

Query: 206 METVVRYTPLCGVGEDSPLCSLWEIDDYTLLLDCGWDDSFDVAQLDPVLKV 358
           M T V+ TPLCGV  ++PL  L  ID +  L+DCGW+D FD + L+P+ +V
Sbjct: 1   MGTSVQVTPLCGVYNENPLSYLVSIDGFNFLIDCGWNDLFDTSLLEPLPRV 51

>dbj|BAC35756.1| unnamed protein product [Mus musculus]
          Length = 296

 Score = 53.9 bits (128), Expect = 5e-07
 Identities = 22/50 (44%), Positives = 34/50 (68%)
 Frame = +2

Query: 206 METVVRYTPLCGVGEDSPLCSLWEIDDYTLLLDCGWDDSFDVAQLDPVLK 355
           M ++++ T L GV E+S LC L ++D++  LLDCGWD+ F V  +D + K
Sbjct: 1   MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRK 50

>ref|XP_216766.2| similar to cleavage and polyadenylation specificity factor [Rattus
           norvegicus]
          Length = 782

 Score = 53.9 bits (128), Expect = 5e-07
 Identities = 22/50 (44%), Positives = 34/50 (68%)
 Frame = +2

Query: 206 METVVRYTPLCGVGEDSPLCSLWEIDDYTLLLDCGWDDSFDVAQLDPVLK 355
           M ++++ T L GV E+S LC L ++D++  LLDCGWD+ F V  +D + K
Sbjct: 1   MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRK 50

>ref|NP_058552.1| cleavage and polyadenylation specific factor 2; cleavage and
           polyadenylation specificity factor; cleavage and
           polyadenylation specific factor 2, 100kD subunit [Mus
           musculus] gi|18202027|sp|O35218|CPSB_MOUSE Cleavage and
           polyadenylation specificity factor, 100 kDa subunit
           (CPSF 100 kDa subunit) gi|2331036|gb|AAB66830.1|
           cleavage and polyadenylation specificity factor [Mus
           musculus] gi|15489017|gb|AAH13628.1| Cleavage and
           polyadenylation specific factor 2 [Mus musculus]
          Length = 782

 Score = 53.9 bits (128), Expect = 5e-07
 Identities = 22/50 (44%), Positives = 34/50 (68%)
 Frame = +2

Query: 206 METVVRYTPLCGVGEDSPLCSLWEIDDYTLLLDCGWDDSFDVAQLDPVLK 355
           M ++++ T L GV E+S LC L ++D++  LLDCGWD+ F V  +D + K
Sbjct: 1   MTSIIKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSVDIIDSLRK 50



EST assemble image


clone accession position
1 CL53d06_r AV395962 1 258
2 CL57a01_r AV396277 1 365




Chlamydomonas reinhardtii
Kazusa DNA Research Institute