KCC000665A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000665A_C01 KCC000665A_c01
gaatcatgcgGTCTAACAACTTCTGCAGCCGTAGAAACCCGGCGCCCCACGCCTGCGCAT
TTCGGCTTACGATATGCCCACCCATCCAGGCCTGCCTCGCCGTTGCGCGATGAGCAGCAC
CTGCTCCTGGCGACCCGAGAGAGAGGATGCTGTCCCAGCACCGCTTGCGCAGCAACTTTA
TTGGACATTATCTTCAGCCACCAACCCTTCGGCAATGTGCCTTGTGCCAACACACGAGTA
CGGGAGCCCTCATCACTGCACATGTTACCATGTGGGCCTTTCGTCAGGGACGTACCATTT
TAGCTCAATCTGCGGTTCCCGGTTTAATAGTGCTTAAAAGCAGCAAACAATCACCCCTCA
TGACTACTTGACTTCGGTGCGCATGGGGCACATACAGAGCGTGTAACAAACGCTGCAAAT
GGCCCGTAGCACTGTCCGCCGCACAGCCCCTATGCGTTTACCAACAGTCATGCACGCAAA
CCATCATAAGCTGCCGCCACCGTCTTTCTTTCAGCCTGGGTCCGTCAGCGCCGCAAGAA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000665A_C01 KCC000665A_c01
         (539 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|EAA40334.1| GLP_22_4218_6245 [Giardia lamblia ATCC 50803]           33  2.4
ref|XP_223768.2| similar to Discs, large homolog 5 (Placenta and...    33  3.2
ref|NP_871992.1| argonaute (plant)-Like Gene (101.6 kD) (alg-2) ...    33  3.2
dbj|BAC04919.1| unnamed protein product [Homo sapiens]                 33  3.2
ref|NP_493837.1| argonaute (plant)-Like Gene (99.5 kD) (alg-2) [...    33  3.2

>gb|EAA40334.1| GLP_22_4218_6245 [Giardia lamblia ATCC 50803]
          Length = 675

 Score = 33.1 bits (74), Expect = 2.4
 Identities = 25/78 (32%), Positives = 32/78 (40%), Gaps = 6/78 (7%)
 Frame = +2

Query: 35  KPGAPRLRISAYDMPTHPGLPRRCAMSSTCSWR---PEREDAVPAPLAQQLYWTL---SS 196
           KP A  L  S  D PT+         S+  S+R   P+R+   P P  +Q         S
Sbjct: 319 KPKADELETSPCDTPTY---------SNPMSFRKEVPQRQATAPQPSTEQKKQEEPQPQS 369

Query: 197 ATNPSAMCLVPTHEYGSP 250
             NP  +CL   H Y SP
Sbjct: 370 DVNPQVICLPTIHRYNSP 387

>ref|XP_223768.2| similar to Discs, large homolog 5 (Placenta and prostate DLG) (Discs
            large protein P-dlg) [Rattus norvegicus]
          Length = 2122

 Score = 32.7 bits (73), Expect = 3.2
 Identities = 19/63 (30%), Positives = 29/63 (45%)
 Frame = +1

Query: 79   HPSRPASPLRDEQHLLLATRERGCCPSTACAATLLDIIFSHQPFGNVPCANTRVREPSSL 258
            H SRP +PL       + T  R   PST  ++ L + I++ +    VPC +  V   +  
Sbjct: 1323 HASRPGNPLLYPNRPSVGTVPRSMTPSTTVSSILRNPIYTVRSHRVVPCGSPPVPRDAGS 1382

Query: 259  HML 267
            H L
Sbjct: 1383 HSL 1385

>ref|NP_871992.1| argonaute (plant)-Like Gene (101.6 kD) (alg-2) [Caenorhabditis
           elegans] gi|24418217|gb|AAB66187.2| Argonaute
           (plant)-like gene protein 2, isoform a [Caenorhabditis
           elegans]
          Length = 910

 Score = 32.7 bits (73), Expect = 3.2
 Identities = 18/39 (46%), Positives = 25/39 (63%), Gaps = 1/39 (2%)
 Frame = +1

Query: 7   CGLTTSAAVETRRPT-PAHFGLRYAHPSRPASPLRDEQH 120
           C +T  AA +TR+P+  A  G   AHPSR A+ +R +QH
Sbjct: 645 CDITHPAAGDTRKPSIAAVVGSMDAHPSRYAATVRVQQH 683

>dbj|BAC04919.1| unnamed protein product [Homo sapiens]
          Length = 178

 Score = 32.7 bits (73), Expect = 3.2
 Identities = 28/94 (29%), Positives = 40/94 (41%), Gaps = 2/94 (2%)
 Frame = +1

Query: 4   SCGLTTSAAVETRRPTPAHFGLRYAHPS--RPASPLRDEQHLLLATRERGCCPSTACAAT 177
           +C LTT+A ++ R P  AH   R  HP+  RP+    + +H L   R  G          
Sbjct: 23  ACVLTTAAVLQVRPPRAAHLWARPTHPAPDRPSPVGLEARHQLPLLRAPGI--QLLLQHA 80

Query: 178 LLDIIFSHQPFGNVPCANTRVREPSSLHMLPCGP 279
           L   +  H   G +P  + R+R   SL   P  P
Sbjct: 81  LRVPLLPHAGRGLLPRPHGRLRLHVSLRGRPYDP 114

>ref|NP_493837.1| argonaute (plant)-Like Gene (99.5 kD) (alg-2) [Caenorhabditis
           elegans] gi|7507380|pir||T32079 hypothetical protein
           T07D3.7 - Caenorhabditis elegans
           gi|28275097|gb|AAO38604.1| Argonaute (plant)-like gene
           protein 2, isoform b [Caenorhabditis elegans]
          Length = 891

 Score = 32.7 bits (73), Expect = 3.2
 Identities = 18/39 (46%), Positives = 25/39 (63%), Gaps = 1/39 (2%)
 Frame = +1

Query: 7   CGLTTSAAVETRRPT-PAHFGLRYAHPSRPASPLRDEQH 120
           C +T  AA +TR+P+  A  G   AHPSR A+ +R +QH
Sbjct: 626 CDITHPAAGDTRKPSIAAVVGSMDAHPSRYAATVRVQQH 664



EST assemble image


clone accession position
1 HCL098b12_r AV645099 1 444
2 CL53a11_r AV395990 11 466
3 HCL097b09_r AV645028 15 340
4 MXL093c11_r BP098439 100 539




Chlamydomonas reinhardtii
Kazusa DNA Research Institute