KCC000664A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000664A_C01 KCC000664A_c01
cgaaagtatattcggttgccgtcatgtggttgtgcacacttgccggtgcacacagtagtc
gggggaaatcgaactactggTGGATTTAGGAAAGGGAGAAGTAGGGTAGGTAAAACGCCG
ATTGTTGTACACGGATGCCCGAGGAGTTGTACAGCGGCTTTGCGACAGCTGTGCGGCGGA
GACATTCGGCTGCGGTTGGATGGCTGCTTTCTAAAGTGGTGTCAAGTATGGTTCTTGGTC
GTGGCGCAACGGAGAATGGCCGCGCGGCAGATAGGCTGACGGGGTCTGTGGTACGCAACA
AGTGTGCATGGCAGAGAGAGGCGCGCACCGCATCCTCTGGGGTAGCCCTTGCCCGGCGCC
ACCAGGAGGTCTGCGGCTGCACTGCTACACGTGCCTCGCAAATGCTGCGCCAGTGGAATG
CGCATGAAGGGTTCGGGATTGATTTTCCATTTCTGTTGCGAAGGTGAAGGAACGCTGGGC
CTGGCGGGCTAGCGCAGGGCGAGCTTCACCACCAGACGACGCAAACAAGTGCTGGTGTTA
TGGCGAGGTGTGCGAAGCAAGGAGGTGTTCGGCCAGGCTGTGGACGACGAATGGTGGTCG
A


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000664A_C01 KCC000664A_c01
         (601 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB22822.1| unnamed protein product [Mus musculus]                 37  0.16
emb|CAD98028.1| hypothetical protein [Homo sapiens]                    37  0.28
ref|XP_343634.1| similar to PP238 [Rattus norvegicus]                  35  0.62
ref|XP_308664.1| ENSANGP00000011176 [Anopheles gambiae] gi|21292...    35  0.81
ref|NP_630263.1| hypothetical protein SC1A9.22c [Streptomyces co...    33  1.1

>dbj|BAB22822.1| unnamed protein product [Mus musculus]
          Length = 104

 Score = 37.4 bits (85), Expect = 0.16
 Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 1/78 (1%)
 Frame = -3

Query: 479 PSVPSPSQQKWKINP-EPFMRIPLAQHLRGTCSSAAADLLVAPGKGYPRGCGARLSLPCT 303
           P VP+ +Q+ WK NP EP+  +P  +  R +  S  A+      KG P GC    S  C 
Sbjct: 2   PRVPAEAQRTWKPNPREPYGAVPRPRRQRASLRSKRAE-----QKGPPLGCKLPWSSVCV 56

Query: 302 LVAYHRPRQPICRAAILR 249
           L+     R P+ R  + R
Sbjct: 57  LL-----RGPLKRGELRR 69

>emb|CAD98028.1| hypothetical protein [Homo sapiens]
          Length = 451

 Score = 36.6 bits (83), Expect = 0.28
 Identities = 22/52 (42%), Positives = 26/52 (49%), Gaps = 8/52 (15%)
 Frame = -2

Query: 378 SRRPPGGAGQGLP--------QRMRCAPLSAMHTCCVPQTPSAYLPRGHSPL 247
           +RRP  GAG+G          QR    P S+M +C  P  PSA LP G  PL
Sbjct: 8   ARRPRLGAGRGAQDPKWGSRSQRANSCPPSSMASCAEPSEPSAPLPAGVPPL 59

>ref|XP_343634.1| similar to PP238 [Rattus norvegicus]
          Length = 615

 Score = 35.4 bits (80), Expect = 0.62
 Identities = 38/160 (23%), Positives = 58/160 (35%)
 Frame = -2

Query: 534 QHLFASSGGEARPALARQAQRSFTFATEMENQSRTLHAHSTGAAFARHV*QCSRRPPGGA 355
           Q L  + G +A P LAR  + +   ATE ++Q  +  A   G A    +      PPG  
Sbjct: 164 QSLERTPGDQAAP-LARGQEEAQVSATEADHQKASSSAADAGGADKSGISMDDFTPPGSG 222

Query: 354 GQGLPQRMRCAPLSAMHTCCVPQTPSAYLPRGHSPLRHDQEPYLTPL*KAAIQPQPNVSA 175
                  +     S+ HT   P  P    P     L+ D EP  +    +  Q  P+ S 
Sbjct: 223 ACKFIGSLHSYSFSSKHTRERPSVPRE--PMDRKRLKRDIEPRCSG--NSVAQSPPSSSL 278

Query: 174 AQLSQSRCTTPRASVYNNRRFTYPTSPFPKSTSSSISPDY 55
               Q    +P A          PT   PK  + ++  ++
Sbjct: 279 TATPQKASQSPSAP---------PTDVTPKPAAEAVQSEH 309

>ref|XP_308664.1| ENSANGP00000011176 [Anopheles gambiae] gi|21292416|gb|EAA04561.1|
           ENSANGP00000011176 [Anopheles gambiae str. PEST]
          Length = 317

 Score = 35.0 bits (79), Expect = 0.81
 Identities = 21/57 (36%), Positives = 31/57 (53%), Gaps = 6/57 (10%)
 Frame = -3

Query: 209 KQPSNRSRMSPPHSCRKAAV------QLLGHPCTTIGVLPTLLLPFLNPPVVRFPPT 57
           KQ S  ++ S PHS +K  +      +L   P T++ + PT+ LPF     VR+PPT
Sbjct: 15  KQASGTAKSSEPHSRKKRLIWVTDDGRLALPPGTSLTIAPTIALPF-----VRYPPT 66

>ref|NP_630263.1| hypothetical protein SC1A9.22c [Streptomyces coelicolor A3(2)]
           gi|7479347|pir||T34671 probable [2Fe-2S] iron-sulfur
           protein SC1A9.22c [similarity] - Streptomyces coelicolor
           gi|4007707|emb|CAA22392.1| hypothetical protein
           SC1A9.22c [Streptomyces coelicolor A3(2)]
          Length = 281

 Score = 32.7 bits (73), Expect(2) = 1.1
 Identities = 15/28 (53%), Positives = 17/28 (60%)
 Frame = +1

Query: 283 GLWYATSVHGRERRAPHPLG*PLPGATR 366
           GLWY   + G + RA H L   LPGATR
Sbjct: 195 GLWYVAHLLGEQERARHELELLLPGATR 222

 Score = 20.8 bits (42), Expect(2) = 1.1
 Identities = 10/30 (33%), Positives = 15/30 (49%)
 Frame = +3

Query: 141 EELYSGFATAVRRRHSAAVGWLLSKVVSSM 230
           E + +GF   +RRR  A  G    +VV  +
Sbjct: 167 EPVLAGFGPRMRRRGRALWGMATDEVVEGL 196



EST assemble image


clone accession position
1 CL52h11_r AV395863 1 376
2 HC022h04_r AV633606 117 560
3 MX018c01_r BP086841 193 601




Chlamydomonas reinhardtii
Kazusa DNA Research Institute