KCC000660A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000660A_C01 KCC000660A_c01
AGCGCCGTTCACTAAGAGCGTGCCACACTTGCAGAGCTGCGAAAGTCTGGTGCCTCGGTC
TCGAGCGACCCGGCGCCCTTGTGGCAAGCTAAGGGCGCTGATGCCATGCTTCGCGCTTTT
AATAAGACCAGTCTTCTGAGTTTGGGCGCAAGCTCGCAAGGCCAGCCAGCGGGAATGGGT
GAAATAGCCTCGGCCGAGGGCACTCTGGAGCACCGGAACACCTCAGTGACGCTGAACCCG
GAGGAGCGCAATGACACTGTGGCGAAATGGATGGTTGGCATCGCAGAATGGCGGGCAACA
GGGTGCCTTCTGGCTGGGGCTGGTGGGGCTTCGCTGCCGCTGTTCGTCACTGGCGTCATG
ATTCGAGGCCACAAAGGCGATCTGGCTCGTTTCTTTGAGCTTCCTCCTTCAGAGAGCCTG
CGTGGGGACTTCCACTGCGCGCTACGAAAGAGGGTGCTGCTGCAGGGCCGGATGTACGTC
TTCGACCACTACGTGTGCTTCTACTCGGCGGTGTTTGGCTTCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000660A_C01 KCC000660A_c01
         (523 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL57639.1| At1g02120/T7I23_26 [Arabidopsis thaliana] gi|2136...    59  4e-08
dbj|BAB31347.1| unnamed protein product [Mus musculus]                 52  5e-06
ref|XP_225748.2| similar to RIKEN cDNA 9130427A09 [Rattus norveg...    52  5e-06
gb|AAH57978.1| 9130427A09Rik protein [Mus musculus]                    52  5e-06
ref|NP_080516.1| RIKEN cDNA 9130427A09 [Mus musculus] gi|1285831...    52  5e-06

>gb|AAL57639.1| At1g02120/T7I23_26 [Arabidopsis thaliana]
           gi|21360409|gb|AAM47320.1| At1g02120/T7I23_26
           [Arabidopsis thaliana]
          Length = 379

 Score = 58.9 bits (141), Expect = 4e-08
 Identities = 23/45 (51%), Positives = 33/45 (73%)
 Frame = +1

Query: 388 RFFELPPSESLRGDFHCALRKRVLLQGRMYVFDHYVCFYSAVFGF 522
           + F LP  E L  DF+CA ++ +L+QG MY+F HY+CFYS +FG+
Sbjct: 74  QLFRLPADEILVQDFNCACQESILMQGHMYLFIHYICFYSNIFGY 118

>dbj|BAB31347.1| unnamed protein product [Mus musculus]
          Length = 432

 Score = 52.0 bits (123), Expect = 5e-06
 Identities = 20/43 (46%), Positives = 32/43 (73%)
 Frame = +1

Query: 391 FFELPPSESLRGDFHCALRKRVLLQGRMYVFDHYVCFYSAVFG 519
           F ++P  E LR  F CAL+K +L QG+++V ++++CF+S VFG
Sbjct: 116 FLDVPTEEPLRQSFTCALQKEILYQGKLFVSENWICFHSKVFG 158

>ref|XP_225748.2| similar to RIKEN cDNA 9130427A09 [Rattus norvegicus]
          Length = 464

 Score = 52.0 bits (123), Expect = 5e-06
 Identities = 20/43 (46%), Positives = 32/43 (73%)
 Frame = +1

Query: 391 FFELPPSESLRGDFHCALRKRVLLQGRMYVFDHYVCFYSAVFG 519
           F ++P  E LR  F CAL+K +L QG+++V ++++CF+S VFG
Sbjct: 172 FLDVPTEEPLRQSFTCALQKEILYQGKLFVSENWICFHSKVFG 214

>gb|AAH57978.1| 9130427A09Rik protein [Mus musculus]
          Length = 445

 Score = 52.0 bits (123), Expect = 5e-06
 Identities = 20/43 (46%), Positives = 32/43 (73%)
 Frame = +1

Query: 391 FFELPPSESLRGDFHCALRKRVLLQGRMYVFDHYVCFYSAVFG 519
           F ++P  E LR  F CAL+K +L QG+++V ++++CF+S VFG
Sbjct: 129 FLDVPTEEPLRQSFTCALQKEILYQGKLFVSENWICFHSKVFG 171

>ref|NP_080516.1| RIKEN cDNA 9130427A09 [Mus musculus] gi|12858310|dbj|BAB31270.1|
           unnamed protein product [Mus musculus]
          Length = 514

 Score = 52.0 bits (123), Expect = 5e-06
 Identities = 20/43 (46%), Positives = 32/43 (73%)
 Frame = +1

Query: 391 FFELPPSESLRGDFHCALRKRVLLQGRMYVFDHYVCFYSAVFG 519
           F ++P  E LR  F CAL+K +L QG+++V ++++CF+S VFG
Sbjct: 198 FLDVPTEEPLRQSFTCALQKEILYQGKLFVSENWICFHSKVFG 240



EST assemble image


clone accession position
1 CL52e02_r AV395852 1 620
2 MXL064g01_r BP096778 102 433




Chlamydomonas reinhardtii
Kazusa DNA Research Institute