KCC000659A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000659A_C01 KCC000659A_c01
cttccaaGCCTGTGACCTATACACCACACATTCTTTCCTTTGCGTCGGTATAATTTATAG
CTTATTTGTGTCTGCAGTCGGAAAGGGCTCCCAAAGCATCGCAGGCGTCCTGGGAGCTCT
CAGCAGCGGTTATCGGAGCATCTGTGAATAGACCGGTTATAGCAAAGAGCCCAAAATGAA
GGGCACAGCTGGCCAGCGCCAGGGCAACCAGGCTCGCGCGGGCGGAAGGACTGTATCCGT
GGTCTGTAATGCAAAGTACAGCGCGCCACTACGCAACCAGCAGAGTGGCGCTGCGGCTCC
GCAAACTGCAGAGTTTTCTGGGCGTGGGGCCACAACATGTGGGACGTTCATTCCGGGGTT
GCCCGAGCTCTCGGGGCTCGCTGTGCGTCCCAGCTCGCCGACATGGCGCATCGTCCAGAG
CCGCCAGCGTGAATCGGTCATCGCAAACTCAACTGACTACACGTCCAGCGCCAGCGATGA
GGGCGTTCTGCGCTTGCCAGGGCGCACCGAGCTGGAGCCCCATATGGTCACCAACGTCTT
CGGCTTCCCGCGCAACCTGGTGGACAAGTACCACCTGGGGCGCGTGATTGGCGCCGGCAG
CTTCGGGGTGGTGCGCGAGGTGGTGGAGAAAGCCACCGGCAAGACGGCCGCGGTGAAGAC
CATCCCCAAGGTGCCCAAGCGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000659A_C01 KCC000659A_c01
         (683 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAC33136.1| unnamed protein product [Mus musculus]                 45  8e-04
ref|NP_081815.2| RIKEN cDNA 6330415M09 [Mus musculus] gi|2633985...    45  8e-04
ref|NP_689832.1| hypothetical protein MGC45428 [Homo sapiens] gi...    45  0.001
emb|CAD39156.1| hypothetical protein [Homo sapiens]                    45  0.001
dbj|BAC82422.1| hypothetical protein [Entamoeba histolytica]           45  0.001

>dbj|BAC33136.1| unnamed protein product [Mus musculus]
          Length = 452

 Score = 45.4 bits (106), Expect = 8e-04
 Identities = 30/94 (31%), Positives = 44/94 (45%)
 Frame = +2

Query: 389 PSSPTWRIVQSRQRESVIANSTDYTSSASDEGVLRLPGRTELEPHMVTNVFGFPRNLVDK 568
           P S   + +      S   +ST   SS  D      PG  E E       F  P  + ++
Sbjct: 31  PGSLRKQRISQHGGSSTSLSSTKVCSSMDDNDG---PGEEESEEG-----FQIPATITER 82

Query: 569 YHLGRVIGAGSFGVVREVVEKATGKTAAVKTIPK 670
           Y +GR IG G+F VV+E +E++T +  A+K I K
Sbjct: 83  YKVGRTIGDGNFAVVKECIERSTAREYALKIIKK 116

>ref|NP_081815.2| RIKEN cDNA 6330415M09 [Mus musculus] gi|26339854|dbj|BAC33590.1|
           unnamed protein product [Mus musculus]
          Length = 755

 Score = 45.4 bits (106), Expect = 8e-04
 Identities = 45/150 (30%), Positives = 64/150 (42%), Gaps = 7/150 (4%)
 Frame = +2

Query: 242 VCNAKYSAPLRNQQSGAAAPQTAEFSGRGATTCGTFIPGLPELSGLAVRPSSPT------ 403
           V  + YS     + SG+ +P  +  S   A+  GT    L          SSPT      
Sbjct: 289 VLKSSYSRASAAKYSGSRSPGFSRRSKSPASVNGTPSSQLSTPKSTKSSSSSPTSPGSFR 348

Query: 404 -WRIVQSRQRESVIANSTDYTSSASDEGVLRLPGRTELEPHMVTNVFGFPRNLVDKYHLG 580
             +I    +  S +    +     S EGV    G    E         FP  L++KY +G
Sbjct: 349 GLKISAQGRSSSNVNGGPELDRCLSPEGV---NGNRCSE--------SFP--LLEKYRIG 395

Query: 581 RVIGAGSFGVVREVVEKATGKTAAVKTIPK 670
           +VIG G+F VV+E V++ TGK  A+K I K
Sbjct: 396 KVIGDGNFAVVKECVDRYTGKEFALKIIDK 425

>ref|NP_689832.1| hypothetical protein MGC45428 [Homo sapiens]
           gi|21619202|gb|AAH32726.1| Hypothetical protein MGC45428
           [Homo sapiens]
          Length = 695

 Score = 45.1 bits (105), Expect = 0.001
 Identities = 19/38 (50%), Positives = 30/38 (78%)
 Frame = +2

Query: 557 LVDKYHLGRVIGAGSFGVVREVVEKATGKTAAVKTIPK 670
           L++KY +G+VIG G+F VV+E ++++TGK  A+K I K
Sbjct: 389 LLEKYKIGKVIGDGNFAVVKECIDRSTGKEFALKIIDK 426

>emb|CAD39156.1| hypothetical protein [Homo sapiens]
          Length = 716

 Score = 45.1 bits (105), Expect = 0.001
 Identities = 19/38 (50%), Positives = 30/38 (78%)
 Frame = +2

Query: 557 LVDKYHLGRVIGAGSFGVVREVVEKATGKTAAVKTIPK 670
           L++KY +G+VIG G+F VV+E ++++TGK  A+K I K
Sbjct: 340 LLEKYKIGKVIGDGNFAVVKECIDRSTGKEFALKIIDK 377

>dbj|BAC82422.1| hypothetical protein [Entamoeba histolytica]
          Length = 398

 Score = 45.1 bits (105), Expect = 0.001
 Identities = 22/39 (56%), Positives = 27/39 (68%)
 Frame = +2

Query: 554 NLVDKYHLGRVIGAGSFGVVREVVEKATGKTAAVKTIPK 670
           +L  KY LG+ IG GSFGVVRE++E AT    A+K I K
Sbjct: 116 SLFKKYQLGKYIGKGSFGVVREIMELATNTKFAIKIINK 154



EST assemble image


clone accession position
1 LCL017a01_r AV626866 1 268
2 LCL049a12_r AV628925 8 247
3 LCL090b05_r AV631198 10 451
4 LCL048d08_r AV628883 10 252
5 LCL046d03_r AV628736 16 527
6 MXL003a07_r BP093074 16 464
7 CL52c07_r AV395842 25 550
8 HCL041c03_r AV641845 68 587
9 HCL082b05_r AV644110 69 531
10 LCL006h12_r AV626324 134 351
11 LCL018e11_r AV626946 144 618
12 HCL086h06_r AV644352 203 684




Chlamydomonas reinhardtii
Kazusa DNA Research Institute