KCC000653A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000653A_C01 KCC000653A_c01
cgCAGTACTTAATATTGCTGCGTTACTCACAGGAAGCTTCCCCGCCTTCGTTTTCCTGTG
CGACCTCCTGTGAGGGGTTTCCAAGTCTCGGAGAGCAAAACCGGCGGTGACGACAGCCGC
ACAACATGCAGCTGCACTGCACGCAGCGCTCCGCAGCAGCGAGCTGCCATGCTCGCCGTG
GCGCTGCAGTGGCGCAAGCGCCAGTCCGCTGCAGCCACCCGTCAGGCGTTTTCCTGAATG
GAGCCTCGATTGCACCGAGCGTGCACCGCTCTCGCCGATGCGTAAAGGCGTTTGTGAGTG
TGGCGAGCCAGAATGCTGCCCAGATGGATGCTGCCCCTCAGAAGGCGCAGGCTACGCAGC
AAGATTGGACGCCCAAAACCACTGCCAGCGACTCAGTTCTCGCAGTGTGGAGGAAGGCGG
ACGCAGTTTGCTTCGATGTTGATTGCACCATTACCGTGAATGACTCGCTGGACCTGCTGG
CCGAGTTCATGGGCGTGAAGGAGCAGGTGGAAATCCTGACCAACAAGGCCATGGACGGCT
CTCTGTCTCTGGAGCAGGCCCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000653A_C01 KCC000653A_c01
         (562 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_502581.1| phosphatase (4O154) [Caenorhabditis elegans] gi...    58  1e-07
pir||T51362 phosphoserine phosphatase (EC 3.1.3.3) precursor, ch...    58  1e-07
ref|NP_173299.1| 3-phosphoserine phosphatase (PSP) [Arabidopsis ...    58  1e-07
ref|NP_502580.1| phosphatase (4O154) [Caenorhabditis elegans] gi...    58  1e-07
ref|NP_502582.1| phosphatase (4O154) [Caenorhabditis elegans] gi...    57  2e-07

>ref|NP_502581.1| phosphatase (4O154) [Caenorhabditis elegans]
           gi|6425505|emb|CAB60607.1| Hypothetical protein
           Y62E10A.13b [Caenorhabditis elegans]
          Length = 290

 Score = 57.8 bits (138), Expect = 1e-07
 Identities = 30/77 (38%), Positives = 44/77 (56%)
 Frame = +3

Query: 330 AAPQKAQATQQDWTPKTTASDSVLAVWRKADAVCFDVDCTITVNDSLDLLAEFMGVKEQV 509
           +A  ++ +T    T      + V  VWRKADAVCFDVD T+  ++ +D LA ++GV E V
Sbjct: 27  SAIPRSISTSPGETISKNHEEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAV 86

Query: 510 EILTNKAMDGSLSLEQA 560
             +T  AM+G+     A
Sbjct: 87  ANVTRTAMNGNARFRDA 103

>pir||T51362 phosphoserine phosphatase (EC 3.1.3.3) precursor, chloroplast
           [validated] - Arabidopsis thaliana
           gi|3759177|dbj|BAA33806.1| 3-phosphoserine phosphatase
           [Arabidopsis thaliana] gi|3759179|dbj|BAA33807.1|
           3-phosphoserin phosphatase [Arabidopsis thaliana]
          Length = 295

 Score = 57.8 bits (138), Expect = 1e-07
 Identities = 27/58 (46%), Positives = 38/58 (64%)
 Frame = +3

Query: 387 SDSVLAVWRKADAVCFDVDCTITVNDSLDLLAEFMGVKEQVEILTNKAMDGSLSLEQA 560
           S  +L +WR  +AVCFDVD T+ V++ +D LAEF G  + V   T +AM GS+  E+A
Sbjct: 73  SKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEA 130

>ref|NP_173299.1| 3-phosphoserine phosphatase (PSP) [Arabidopsis thaliana]
           gi|25402864|pir||B86320 3-phosphoserine phosphatase
           [imported] - Arabidopsis thaliana
           gi|9795592|gb|AAF98410.1|AC026238_2 3-phosphoserine
           phosphatase [Arabidopsis thaliana]
           gi|17529132|gb|AAL38792.1| putative 3-phosphoserine
           phosphatase [Arabidopsis thaliana]
           gi|20465705|gb|AAM20321.1| putative 3-phosphoserine
           phosphatase [Arabidopsis thaliana]
           gi|21592986|gb|AAM64935.1| 3-phosphoserine phosphatase
           [Arabidopsis thaliana]
          Length = 295

 Score = 57.8 bits (138), Expect = 1e-07
 Identities = 27/58 (46%), Positives = 38/58 (64%)
 Frame = +3

Query: 387 SDSVLAVWRKADAVCFDVDCTITVNDSLDLLAEFMGVKEQVEILTNKAMDGSLSLEQA 560
           S  +L +WR  +AVCFDVD T+ V++ +D LAEF G  + V   T +AM GS+  E+A
Sbjct: 73  SKEILDLWRSVEAVCFDVDSTVCVDEGIDELAEFCGAGKAVAEWTARAMGGSVPFEEA 130

>ref|NP_502580.1| phosphatase (4O154) [Caenorhabditis elegans]
           gi|6425506|emb|CAB60608.1| Hypothetical protein
           Y62E10A.13a [Caenorhabditis elegans]
          Length = 287

 Score = 57.8 bits (138), Expect = 1e-07
 Identities = 30/77 (38%), Positives = 44/77 (56%)
 Frame = +3

Query: 330 AAPQKAQATQQDWTPKTTASDSVLAVWRKADAVCFDVDCTITVNDSLDLLAEFMGVKEQV 509
           +A  ++ +T    T      + V  VWRKADAVCFDVD T+  ++ +D LA ++GV E V
Sbjct: 24  SAIPRSISTSPGETISKNHEEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAV 83

Query: 510 EILTNKAMDGSLSLEQA 560
             +T  AM+G+     A
Sbjct: 84  ANVTRTAMNGNARFRDA 100

>ref|NP_502582.1| phosphatase (4O154) [Caenorhabditis elegans]
           gi|14530660|emb|CAC42380.1| Hypothetical protein
           Y62E10A.13c [Caenorhabditis elegans]
          Length = 276

 Score = 57.0 bits (136), Expect = 2e-07
 Identities = 29/71 (40%), Positives = 43/71 (59%)
 Frame = +3

Query: 330 AAPQKAQATQQDWTPKTTASDSVLAVWRKADAVCFDVDCTITVNDSLDLLAEFMGVKEQV 509
           +A  ++ +T    T      + V  VWRKADAVCFDVD T+  ++ +D LA ++GV E V
Sbjct: 11  SAIPRSISTSPGETISKNHEEEVKRVWRKADAVCFDVDSTVCQDEGIDELAAYLGVGEAV 70

Query: 510 EILTNKAMDGS 542
             +T  AM+G+
Sbjct: 71  ANVTRTAMNGN 81



EST assemble image


clone accession position
1 LCL002a05_r AV626075 1 308
2 LCL035h04_r AV628044 3 505
3 LCL047f05_r AV628824 18 486
4 HCL009e02_r AV640054 22 514
5 HCL088b03_r AV644415 32 553
6 LCL094d11_r AV631460 32 332
7 LCL046c03_r AV628726 55 511
8 LCL004g09_r AV626232 55 458
9 CL52b03_r AV395836 72 551
10 LCL073g03_r AV630132 86 472
11 MXL044h11_r BP095633 114 562




Chlamydomonas reinhardtii
Kazusa DNA Research Institute