KCC000650A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000650A_C01 KCC000650A_c01
ctccagtgcgttttcagacgctagctcgttttcgtttccggCGCGGTCAGCCCCGGCGGG
ACCAGTCGCCCGGCCTCCCCGAACTGGCGTCAGTCTACTCAGTCGCGCGCTCAGCACCGG
CGAGAAGGAGCAGGACCTTCTGGCGCACCTGCCGCCGGTGCTGCCGAGTACAGATGCGGC
CGACCCGCTGCTGTTTTTTCCGGGCATTCCCCTGGAGCTTCTCCGCGAGGCGCAGGCTGA
GTTTCCCATCTTCAACAACGAGCTGCTGGTGCACGCGTATGGCCTCGCCGCGCGCGCGCA
TCAAAACCAGCAGCGCAAGAATGGGGAGTCGCTTCTGAGCCACTGCGTCGCTGTCGCCAA
AACCGTTGCGGGCCTGGGCCTGGACGCGGAGACCGTGGCGGCTGCTCTGCTGCACGAGTG
CGTGGACATGGTTTCCCGCTCCCAGCTGGAGGAGTTCATGCCCCCCAGCGTTGTCAGTGT
CCTGGAGCACGTCAACACTATCAGTGAGATGAGCCGCCTGTACCGGCAGCACAGCGCCAC
GGGTTCGTTCAGCGACGAGACCTTCCAGCGCTTGCTGGTGGGTTTTGAGGACGTCAAGGC
GGTCATCGTGAAACTGTCGGACCGGCTGGCTGAGCTGCGTACCATCAGCGTTCTGCCAGC
TGACCGCCAGGCCGCGCTGGCTCGGGAGACCTTGGAGGTATACTCTGTGGTTGCCAACCG
CCTCGGCGTGTGGTGCTTGAAGGCGGAGCTGGAGGACCTGGCATTCAGCGTCCTGCACCC
CCAGGAGTATAACTGGCTGAAAGAGGCGGTGCGGACGAGGCAGGACCCGGTGGCGCTGGA
GACCGCCATCAACTCGATCAAGGGCGCCCTGCAGGCGCAGGGCGTTGCGTACGAGGACAT
CAGCGGGCGGCCCAAGAACCTGTACGGCATCTTCATGAAGCTGCAGAAGGACGGCAAGCC
GTTGACGATCGAGTCGCTCAACTCGCTGTACGACCTGATGGCGCTGCGCGTGGTCGTGGC
GCACAAGCACGAGTGCTACACGGCGCTGCGCGCGGTGCAGAGCGTCTACCGTGTCATGCC
CTCCCGCAGCA


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000650A_C01 KCC000650A_c01
         (1091 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

dbj|BAB91333.1| chloroplast ppGpp synthase/degradase [Chlamydomo...   704  0.0
pir||D96582 hypothetical protein F15I1.23 [imported] - Arabidops...   176  5e-43
dbj|BAC56909.1| RelA homolog [Suaeda japonica]                        176  8e-43
dbj|BAC81140.1| plastid (p)ppGpp synthase [Oryza sativa (japonic...   175  1e-42
ref|NP_485589.1| (p)ppGpp 3-pyrophosphohydrolase [Nostoc sp. PCC...   175  1e-42

>dbj|BAB91333.1| chloroplast ppGpp synthase/degradase [Chlamydomonas reinhardtii]
          Length = 735

 Score =  704 bits (1818), Expect = 0.0
 Identities = 363/363 (100%), Positives = 363/363 (100%)
 Frame = +2

Query: 2    SSAFSDASSFSFPARSAPAGPVARPPRTGVSLLSRALSTGEKEQDLLAHLPPVLPSTDAA 181
            SSAFSDASSFSFPARSAPAGPVARPPRTGVSLLSRALSTGEKEQDLLAHLPPVLPSTDAA
Sbjct: 109  SSAFSDASSFSFPARSAPAGPVARPPRTGVSLLSRALSTGEKEQDLLAHLPPVLPSTDAA 168

Query: 182  DPLLFFPGIPLELLREAQAEFPIFNNELLVHAYGLAARAHQNQQRKNGESLLSHCVAVAK 361
            DPLLFFPGIPLELLREAQAEFPIFNNELLVHAYGLAARAHQNQQRKNGESLLSHCVAVAK
Sbjct: 169  DPLLFFPGIPLELLREAQAEFPIFNNELLVHAYGLAARAHQNQQRKNGESLLSHCVAVAK 228

Query: 362  TVAGLGLDAETVAAALLHECVDMVSRSQLEEFMPPSVVSVLEHVNTISEMSRLYRQHSAT 541
            TVAGLGLDAETVAAALLHECVDMVSRSQLEEFMPPSVVSVLEHVNTISEMSRLYRQHSAT
Sbjct: 229  TVAGLGLDAETVAAALLHECVDMVSRSQLEEFMPPSVVSVLEHVNTISEMSRLYRQHSAT 288

Query: 542  GSFSDETFQRLLVGFEDVKAVIVKLSDRLAELRTISVLPADRQAALARETLEVYSVVANR 721
            GSFSDETFQRLLVGFEDVKAVIVKLSDRLAELRTISVLPADRQAALARETLEVYSVVANR
Sbjct: 289  GSFSDETFQRLLVGFEDVKAVIVKLSDRLAELRTISVLPADRQAALARETLEVYSVVANR 348

Query: 722  LGVWCLKAELEDLAFSVLHPQEYNWLKEAVRTRQDPVALETAINSIKGALQAQGVAYEDI 901
            LGVWCLKAELEDLAFSVLHPQEYNWLKEAVRTRQDPVALETAINSIKGALQAQGVAYEDI
Sbjct: 349  LGVWCLKAELEDLAFSVLHPQEYNWLKEAVRTRQDPVALETAINSIKGALQAQGVAYEDI 408

Query: 902  SGRPKNLYGIFMKLQKDGKPLTIESLNSLYDLMALRVVVAHKHECYTALRAVQSVYRVMP 1081
            SGRPKNLYGIFMKLQKDGKPLTIESLNSLYDLMALRVVVAHKHECYTALRAVQSVYRVMP
Sbjct: 409  SGRPKNLYGIFMKLQKDGKPLTIESLNSLYDLMALRVVVAHKHECYTALRAVQSVYRVMP 468

Query: 1082 SRS 1090
            SRS
Sbjct: 469  SRS 471

>pir||D96582 hypothetical protein F15I1.23 [imported] - Arabidopsis thaliana
            gi|4587556|gb|AAD25787.1|AC006577_23 Similar to
            gi|1653162 (p)ppGpp 3-pyrophosphohydrolase from
            Synechocystis sp genome gb|D90911.  EST gb|W43807 comes
            from this gene. [Arabidopsis thaliana]
          Length = 715

 Score =  176 bits (447), Expect = 5e-43
 Identities = 94/294 (31%), Positives = 174/294 (58%), Gaps = 3/294 (1%)
 Frame = +2

Query: 215  ELLREAQAEFPIFNNELLVHAYGLAARAHQNQQRKNGESLLSHCVAVAKTVAGLGLDAET 394
            +LLR AQ +  IF +E ++ A+  A +AH+ Q R  G+  L HCV  A  +A +G ++  
Sbjct: 198  DLLRRAQLKHKIFEDESVIKAFYEAEKAHRGQMRATGDPYLQHCVETAMLLADIGANSTV 257

Query: 395  VAAALLHECVD--MVSRSQLEEFMPPSVVSVLEHVNTISEMSRLYRQHS-ATGSFSDETF 565
            V A +LH+ +D   +S   +       V  ++E V+ +S++S+L R+++ A  +   +  
Sbjct: 258  VVAGILHDTLDDSFMSYDYILRTFGSGVADLVEGVSKLSQLSKLARENNTACKTVEADRL 317

Query: 566  QRLLVGFEDVKAVIVKLSDRLAELRTISVLPADRQAALARETLEVYSVVANRLGVWCLKA 745
              + +   D +AV++KL+DRL  + T+  LP  ++   A+ETLE+++ +ANRLG+   K 
Sbjct: 318  HTMFLAMADARAVLIKLADRLHNMMTLYALPPVKRQRFAKETLEIFAPLANRLGISSWKV 377

Query: 746  ELEDLAFSVLHPQEYNWLKEAVRTRQDPVALETAINSIKGALQAQGVAYEDISGRPKNLY 925
            +LE+L F  LHP +++ + + +    D   + +AI  ++ AL+ +G++Y  +SGR K+LY
Sbjct: 378  KLENLCFKHLHPDQHHEMSDMLEDSFDEAMITSAIEKLEQALKKEGISYHVVSGRHKSLY 437

Query: 926  GIFMKLQKDGKPLTIESLNSLYDLMALRVVVAHKHECYTALRAVQSVYRVMPSR 1087
             I+ K+ K  K LT   ++ ++D+  LR++V ++ +CY AL  V  ++  +P +
Sbjct: 438  SIYCKMLK--KKLT---MDEIHDIHGLRLIVDNEKDCYKALGVVHKLWSEVPGK 486

>dbj|BAC56909.1| RelA homolog [Suaeda japonica]
          Length = 708

 Score =  176 bits (445), Expect = 8e-43
 Identities = 94/294 (31%), Positives = 173/294 (57%), Gaps = 3/294 (1%)
 Frame = +2

Query: 215  ELLREAQAEFPIFNNELLVHAYGLAARAHQNQQRKNGESLLSHCVAVAKTVAGLGLDAET 394
            ELL  AQ    IF ++ ++ A+  A +AH+ Q R +G   L HC+  A  +A +G +A  
Sbjct: 187  ELLASAQIRHKIFYDQFVIKAFYEAEKAHRGQVRASGHPYLHHCMETAVLLASIGANATV 246

Query: 395  VAAALLHECVD--MVSRSQLEEFMPPSVVSVLEHVNTISEMSRLYRQHS-ATGSFSDETF 565
            VAA LLH+ +D   V+   +       V  ++  V+ +S +S+L R+++ A+ +   +  
Sbjct: 247  VAAGLLHDTIDDSFVTYDYILNIFGSGVADLVNGVSKLSHLSKLARENNTASKTIEADRL 306

Query: 566  QRLLVGFEDVKAVIVKLSDRLAELRTISVLPADRQAALARETLEVYSVVANRLGVWCLKA 745
              + +   D +AV++KL+DRL  + T+  LP+ +Q   A+ETLE+++ +ANRLG+   K 
Sbjct: 307  HTMFLAMADARAVLIKLADRLHNMMTLDALPSHKQQRFAKETLEIFAPLANRLGISTWKE 366

Query: 746  ELEDLAFSVLHPQEYNWLKEAVRTRQDPVALETAINSIKGALQAQGVAYEDISGRPKNLY 925
            +LE+L F  L+P +Y+ L   +    D   +++AI+ ++  L+ + ++Y D+SGR K+LY
Sbjct: 367  QLENLCFKHLYPNQYDELSSKLVKSFDQARIQSAIDKLEEGLKDEDLSYHDLSGRHKSLY 426

Query: 926  GIFMKLQKDGKPLTIESLNSLYDLMALRVVVAHKHECYTALRAVQSVYRVMPSR 1087
             I  K+ K  K LT   ++ ++D+  LR++V ++ +C+ AL+ V  ++  +P +
Sbjct: 427  SIHCKMSK--KKLT---MDQIHDIHGLRLIVENEDDCFRALKVVHQLWSEVPGK 475

>dbj|BAC81140.1| plastid (p)ppGpp synthase [Oryza sativa (japonica cultivar-group)]
          Length = 718

 Score =  175 bits (443), Expect = 1e-42
 Identities = 112/339 (33%), Positives = 187/339 (55%), Gaps = 3/339 (0%)
 Frame = +2

Query: 62   PVARPPRTGVSLLSRALSTGEKEQDLLAHLPPVLPSTDAADPLLFFPGIPLELLREAQAE 241
            PVA  P  GVS  +  +  GE   +L  HL    PS +             +LL  AQA 
Sbjct: 164  PVAALP-LGVSA-AVGVGAGELAFELDEHLSEAEPSCEP---------YARDLLAGAQAR 212

Query: 242  FPIFNNELLVHAYGLAARAHQNQQRKNGESLLSHCVAVAKTVAGLGLDAETVAAALLHEC 421
              IF++EL+V A+  A RAH+ Q R +G+  L HCV  A  +A +G +A  V+A LLH+ 
Sbjct: 213  HRIFHDELVVKAFFEAERAHRGQTRASGDPYLQHCVETAVLLAKIGANATVVSAGLLHDT 272

Query: 422  VD--MVSRSQLEEFMPPSVVSVLEHVNTISEMSRLYRQHS-ATGSFSDETFQRLLVGFED 592
            +D   +   Q+       V  ++E V+ +S +S+L R ++ A+ +   +    + +   D
Sbjct: 273  IDDSFMDYDQIFRMFGAGVADLVEGVSKLSHLSKLARDNNTASRTVEADRLHTMFLAMAD 332

Query: 593  VKAVIVKLSDRLAELRTISVLPADRQAALARETLEVYSVVANRLGVWCLKAELEDLAFSV 772
             +AV++KL+DRL  ++TI  LP  +Q   A+ET+E++  +ANRLG+   K +LE++ F  
Sbjct: 333  ARAVLIKLADRLHNMKTIEALPLVKQQRFAKETMEIFVPLANRLGIASWKDQLENICFKH 392

Query: 773  LHPQEYNWLKEAVRTRQDPVALETAINSIKGALQAQGVAYEDISGRPKNLYGIFMKLQKD 952
            L+P+E+  L   +    D   L + ++ +   L+ +G++Y  +SGR K+LY I+ K+ K 
Sbjct: 393  LNPEEHKELSSKLVISFDEALLTSTLDKLDKGLRDEGISYHSLSGRHKSLYSIYSKMIK- 451

Query: 953  GKPLTIESLNSLYDLMALRVVVAHKHECYTALRAVQSVY 1069
             K LT   ++ ++D+  LR+VV  + +CY AL  V  ++
Sbjct: 452  -KNLT---MDDVHDIHGLRLVVDTEQDCYQALDIVHKLW 486

>ref|NP_485589.1| (p)ppGpp 3-pyrophosphohydrolase [Nostoc sp. PCC 7120]
            gi|25289090|pir||AG1999 (p)ppGpp 3-pyrophosphohydrolase
            [imported] - Nostoc sp.  (strain PCC 7120)
            gi|17135369|dbj|BAB77915.1| (p)ppGpp
            3-pyrophosphohydrolase [Nostoc sp. PCC 7120]
          Length = 751

 Score =  175 bits (443), Expect = 1e-42
 Identities = 102/285 (35%), Positives = 164/285 (56%), Gaps = 7/285 (2%)
 Frame = +2

Query: 254  NNELLVHAYGLAARAHQNQQRKNGESLLSHCVAVAKTVAGLGLDAETVAAALLHECVDM- 430
            +N L+  A+  A + H  Q RK+GE  +SH +AVA  +  LG     +AA  LH+ V+  
Sbjct: 40   DNTLICRAFDFAYQLHHGQYRKSGELYISHPIAVAGLLRDLGGSPAMIAAGFLHDVVEDT 99

Query: 431  -VSRSQLEEFMPPSVVSVLEHVNTISEMSRLYRQHSATGSFSDETFQRLLVGF-EDVKAV 604
             V+  ++EE   P V  ++E V  +S+++   ++ S       E F+R+ +   +D++ +
Sbjct: 100  DVTIEEIEERFGPEVKQLVEGVTKLSKINFTSKKESQA-----ENFRRMFLAMAQDIRVI 154

Query: 605  IVKLSDRLAELRTISVLPADRQAALARETLEVYSVVANRLGVWCLKAELEDLAFSVLHPQ 784
            +VKL+DRL  +RT+  +  D +   A+ET ++++ +ANRLG+W +K ELEDLAF  L P+
Sbjct: 155  VVKLADRLHNMRTLQYMSEDSRRRSAQETRDIFAPLANRLGIWRIKWELEDLAFKNLEPE 214

Query: 785  EYNWLKEAVR----TRQDPVALETAINSIKGALQAQGVAYEDISGRPKNLYGIFMKLQKD 952
             +  +++ V      R++ +A  TAI  ++  LQ  GV   DISGRPK+LY I+ K+ + 
Sbjct: 215  AFRQMQKYVSEKRDAREEKLAKATAI--LRDRLQQAGVRCLDISGRPKHLYSIYQKMHRQ 272

Query: 953  GKPLTIESLNSLYDLMALRVVVAHKHECYTALRAVQSVYRVMPSR 1087
             K       N +YDL ALR++V    ECY AL  V   +R +P R
Sbjct: 273  QK-----EFNEIYDLAALRIIVETNEECYRALAVVHDAFRPIPGR 312



EST assemble image


clone accession position
1 LCL086d01_r AV630920 1 186
2 LCL069e11_r AV629944 42 423
3 LCL076a09_r AV630246 184 557
4 LCL031h10_r AV627782 229 539
5 HCL083c06_r AV644170 245 665
6 HCL014d08_r AV640334 409 967
7 MXL025c05_r BP094583 435 879
8 MXL100a01_r BP098836 504 872
9 LCL026b11_r AV627399 545 972
10 CL51g10_r AV395927 587 1091




Chlamydomonas reinhardtii
Kazusa DNA Research Institute