KCC000649A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000649A_C01 KCC000649A_c01
caagtgattaaataccgcccatagggccTCTCAGCACGCATTTGAAAAGGAGACGCGAGA
CTTGAAAGTCGTCTCGGTCGCGCCCAGCTGCGCGAAAATGTCGCTGCTGGACGATCCTAA
CTTTGTAGGGCAAGACGAGGATGACGACGTGGCGAACCAGCTGGCCGAGGAGGACACTCA
GGACCAGGCGGAGGACGACGACGACGACGAGAGCGTAAAGACGGAGGATGTGGACTATGA
GCCGGAGCTCGGGGATGACGCGGTGGTCTCCCCTGCAAAGCTGGCAGTTGCGAAGGCGGA
AACGGAACGCCTTAAGCATCAGGCAAAGCAGAAGAAGGAGATGCTGGAGCGCATGCGCGA
GCAGCAGAACCAGCTGGCCACGATGGGCGACGCGGAGCGGGCGCGGCACCGCATCAACTT
CCTGTTGAAGCAGGCGGAGATTTTCCAGCACTTCGCGTCGGACTCGGCCGTGAAGGAGGC
CAAGAAGGCCAAGACCAAGGGCCGCGGCCAGCGCAAGGAGGAGGACGAGGACGCTGAGCT
G


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000649A_C01 KCC000649A_c01
         (541 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_850847.1| DNA-dependent ATPase, putative [Arabidopsis tha...    73  2e-12
ref|NP_568365.2| DNA-dependent ATPase, putative [Arabidopsis tha...    73  2e-12
gb|AAF08585.1|AC011623_18 putative ATPase (ISW2-like) [Arabidops...    73  3e-12
gb|AAM13851.1| putative ATPase (ISW2) [Arabidopsis thaliana]           73  3e-12
ref|NP_187291.2| DNA-dependent ATPase, putative [Arabidopsis tha...    73  3e-12

>ref|NP_850847.1| DNA-dependent ATPase, putative [Arabidopsis thaliana]
          Length = 1072

 Score = 73.2 bits (178), Expect = 2e-12
 Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
 Frame = +2

Query: 110 DDPNFVGQDEDDDVANQLAEEDTQDQAEDD---DDDESVKTEDVDYEPELGDDAVVSPAK 280
           D  N    D++ +   + A  D +D A D+    DDE V  ED   E E  ++      K
Sbjct: 25  DQANVEEDDDELEAVARSAGSDEEDVAPDEAPVSDDEVVPVEDDAEEDEEDEE------K 78

Query: 281 LAVAKAETERLKHQAKQKKEMLERMREQQNQLATMGDAERARHRINFLLKQAEIFQHFAS 460
             ++K E  RLK   K KK+ ++++ + QN         + + RI +LL+Q E+F HFA 
Sbjct: 79  AEISKREKARLKEMQKMKKQKIQQILDSQNASIDADMNNKGKGRIKYLLQQTELFAHFAK 138

Query: 461 DSAVKEAKKAKTKGRGQRK--EEDEDAE 538
                  KK K +GR   K  EE+ED E
Sbjct: 139 SDPSPSQKKGKGRGRHSSKLTEEEEDEE 166

>ref|NP_568365.2| DNA-dependent ATPase, putative [Arabidopsis thaliana]
          Length = 1069

 Score = 73.2 bits (178), Expect = 2e-12
 Identities = 48/148 (32%), Positives = 71/148 (47%), Gaps = 5/148 (3%)
 Frame = +2

Query: 110 DDPNFVGQDEDDDVANQLAEEDTQDQAEDD---DDDESVKTEDVDYEPELGDDAVVSPAK 280
           D  N    D++ +   + A  D +D A D+    DDE V  ED   E E  ++      K
Sbjct: 25  DQANVEEDDDELEAVARSAGSDEEDVAPDEAPVSDDEVVPVEDDAEEDEEDEE------K 78

Query: 281 LAVAKAETERLKHQAKQKKEMLERMREQQNQLATMGDAERARHRINFLLKQAEIFQHFAS 460
             ++K E  RLK   K KK+ ++++ + QN         + + RI +LL+Q E+F HFA 
Sbjct: 79  AEISKREKARLKEMQKMKKQKIQQILDSQNASIDADMNNKGKGRIKYLLQQTELFAHFAK 138

Query: 461 DSAVKEAKKAKTKGRGQRK--EEDEDAE 538
                  KK K +GR   K  EE+ED E
Sbjct: 139 SDPSPSQKKGKGRGRHSSKLTEEEEDEE 166

>gb|AAF08585.1|AC011623_18 putative ATPase (ISW2-like) [Arabidopsis thaliana]
          Length = 1057

 Score = 72.8 bits (177), Expect = 3e-12
 Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
 Frame = +2

Query: 131 QDEDDDVANQLAEEDTQDQAEDDD---DDESVKTEDVDYEPELGDDAVVSPAKLAVAKAE 301
           ++E + VA     +D +  A D+    D E+   ED DYE E  ++      K  ++K E
Sbjct: 28  EEELEAVARSSGSDDDEVAAADESPVSDGEAAPVED-DYEDEEDEE------KAEISKRE 80

Query: 302 TERLKHQAKQKKEMLERMREQQNQLATMGDAERARHRINFLLKQAEIFQHFASDSAVKEA 481
             RLK   K KK+ ++ M E QN         + + R+ +LL+Q E+F HFA        
Sbjct: 81  KARLKEMQKLKKQKIQEMLESQNASIDADMNNKGKGRLKYLLQQTELFAHFAKSDGSSSQ 140

Query: 482 KKAKTKGRGQRK--EEDEDAE 538
           KKAK +GR   K  EE+ED E
Sbjct: 141 KKAKGRGRHASKITEEEEDEE 161

>gb|AAM13851.1| putative ATPase (ISW2) [Arabidopsis thaliana]
          Length = 1055

 Score = 72.8 bits (177), Expect = 3e-12
 Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
 Frame = +2

Query: 131 QDEDDDVANQLAEEDTQDQAEDDD---DDESVKTEDVDYEPELGDDAVVSPAKLAVAKAE 301
           ++E + VA     +D +  A D+    D E+   ED DYE E  ++      K  ++K E
Sbjct: 28  EEELEAVARSSGSDDDEVAAADESPVSDGEAAPVED-DYEDEEDEE------KAEISKRE 80

Query: 302 TERLKHQAKQKKEMLERMREQQNQLATMGDAERARHRINFLLKQAEIFQHFASDSAVKEA 481
             RLK   K KK+ ++ M E QN         + + R+ +LL+Q E+F HFA        
Sbjct: 81  KARLKEMQKLKKQKIQEMLESQNASIDADMNNKGKGRLKYLLQQTELFAHFAKSDGSSSQ 140

Query: 482 KKAKTKGRGQRK--EEDEDAE 538
           KKAK +GR   K  EE+ED E
Sbjct: 141 KKAKGRGRHASKITEEEEDEE 161

>ref|NP_187291.2| DNA-dependent ATPase, putative [Arabidopsis thaliana]
          Length = 1055

 Score = 72.8 bits (177), Expect = 3e-12
 Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
 Frame = +2

Query: 131 QDEDDDVANQLAEEDTQDQAEDDD---DDESVKTEDVDYEPELGDDAVVSPAKLAVAKAE 301
           ++E + VA     +D +  A D+    D E+   ED DYE E  ++      K  ++K E
Sbjct: 28  EEELEAVARSSGSDDDEVAAADESPVSDGEAAPVED-DYEDEEDEE------KAEISKRE 80

Query: 302 TERLKHQAKQKKEMLERMREQQNQLATMGDAERARHRINFLLKQAEIFQHFASDSAVKEA 481
             RLK   K KK+ ++ M E QN         + + R+ +LL+Q E+F HFA        
Sbjct: 81  KARLKEMQKLKKQKIQEMLESQNASIDADMNNKGKGRLKYLLQQTELFAHFAKSDGSSSQ 140

Query: 482 KKAKTKGRGQRK--EEDEDAE 538
           KKAK +GR   K  EE+ED E
Sbjct: 141 KKAKGRGRHASKITEEEEDEE 161



EST assemble image


clone accession position
1 MXL036e12_r BP095146 1 395
2 CL51g06_r AV395900 29 541




Chlamydomonas reinhardtii
Kazusa DNA Research Institute