KCC000641A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000641A_C01 KCC000641A_c01
CGTCGCTGAGCATTCTTCCCTGCTACTTCTTGCAACCACACAGTCGCGTGCCTCGCTCCA
CACAAGCACAATCAATTCGCCTTTAGTCGCTCAAGAAAAAGCACGAATGAGTCGCCCCCA
GGATGCCAGCTGTTAAGCGCACTTCCATGCGTAGTGTTTACGACCCTATCGCCACTGAGC
CGATCGTCGCGTCTGAGCCTGCTCGCCTGGTTGTGAAGCGGACTGCTTGCTTCGCCGATA
CCGGCTCGCTCCCCAGCTAAGGCTTCTGCCCCCTCGAGGGGCTCAAGTGATTCTGCGTCT
GCAATAGTTTGTCCCGGCAACCAATTTAGCATCAGAGAGTGATTGTTTCCAACACAGCAC
ACAGCACCTGTGGTCTCCCCAAGGCCCGCGCGAGCGAGCACTAAAAAAGCCTAAAAATGA
CCGTGAACGAGAATGGTGTCCTGCACATGCCCTATCTTCGAGGGCAGCGAGAAGCGCATC
GAGGTGGACTTCCGCCTCGGCCCCAACGTGCCCGCCAATGGCCTCCGCTCCATCCCGCGC
GAGACGCTGGACGAGCTGATGACCCTGGCGCGCTGCTGCATCGTGTCGTCGCGCAGCAAC
GACAAGCTGGACGCGTACGTGCTGTCTGAGAGCAGCCTCTTCGTGTACCCCACGAAGTGG
ATTCTGAAGACCTGCGGCACTACACGCCTGCTGAACTCGGTGCCGCGCCTGCTGGAGGTG
GCGCGCTCCATTGGTCTGGAGCCCCGCCGCTGCAAGTACACGCGTGCCAGCTTCCTCTTC
CCGGAGAACCAGCCCTTCCCCTACACTGCCTTCGAGCACGAGGTGGGCTTCCTGGACGAG
CACTTTGGCGCCATGTGCGCCAACGGCGGCACCGCCTTCATGCTGGGCGAGCCCTACCAG
GGCCTGCAGTGGCACGTGTACCTGGCGGACGACATGCTGCCGCTGGGCCCCGAGTTCAAG
CCCACCTACAACTTCGAGGTGACGATGACGGACCTGGGCACCGAGGCGGCCGCGCAGTTC
TTCCGCGACAACAACCCCAAGTTTGTCTCGGCGGAGCGCACCACCAAGGACACCGGCATC
GCTGAGCTCAAGCCCAAGGCCATCATCGACGACTACGTCTTTGAGCCGTGCGGCTACTCG
ATGAACGGCATTGACAACACCGGACTGATCACCATTCACGTGACGCCGGAGGCGCACCAG
AGCTACGCGTCGGTTGAGTTTTCGGGCTTTGGGGAGGACCTGATGGCGCCGGTCCAGGAG
CTGCTGAACAAGGTGGTCAAGATCTTCGCGCCGGGCAAAGTCTCGGTGACCATGTCTGTG
GACAAGGTCGATATGGACGCGACGGGCTGCTGGGGCAACCTGACGATGTGCCCCGCGGGC
TTCGGCCTGCAGGGCGCCTCGAGCCAGGTCAGCCCCTGCGGCGGCAAGGTGGCGTACTAC
ACGCTGATTGAGAAGCTGGCGGCGCCCGGCTCCCCGATCACGCCCCTGCACCACGCCGCG
TCCTTCCTGTCCATTGTCACGTCCTCGGACTCCGAGGCGGACAATGGCAGCGAGCCCGAG
CGCGAGATCGTTACCACCGCCACGGCCTGATGAGCTGGAGGGAGAGAGGCTGACGGCGGC
GGCGGCGGCGGGTGAAGCGCCGCTAGCTGCTGGTGGCTCCT


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000641A_C01 KCC000641A_c01
         (1661 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL16065.1|AF420239_1 S-adenosyl-L-methionine decarboxylase [...   236  9e-61
sp|O65354|DCAM_HELAN S-adenosylmethionine decarboxylase proenzym...   233  6e-60
gb|AAM44307.1|AF512545_1 S-adenosylmethionine decarboxylase [x C...   233  8e-60
dbj|BAC55114.1| S-adenosylmethionine decarboxylase [Malus x dome...   230  6e-59
sp|O24215|DCAM_ORYSA S-adenosylmethionine decarboxylase proenzym...   230  6e-59

>gb|AAL16065.1|AF420239_1 S-adenosyl-L-methionine decarboxylase [Dendrobium crumenatum]
          Length = 369

 Score =  236 bits (602), Expect = 9e-61
 Identities = 132/300 (44%), Positives = 189/300 (63%), Gaps = 5/300 (1%)
 Frame = +1

Query: 436  VSCTCPIFEGSEKRIEVDFRLGP---NVPANGLRSIPRETLDELMTLARCCIVSSRSNDK 606
            ++C+   FEG EKR+E+ F   P   +   +GLR++ R  +D ++  A+C IVS  SN  
Sbjct: 1    MACSPIGFEGYEKRLEITFSEAPLFVDPHGHGLRALTRPQIDSILEPAKCTIVSQLSNKH 60

Query: 607  LDAYVLSESSLFVYPTKWILKTCGTTRLLNSVPRLLEVARSIGLEPRRCKYTRASFLFPE 786
             D+YVLSESSLFVYP K ILKTCGTTRLL S+P +L++A  + L     KY+R SF+FP 
Sbjct: 61   FDSYVLSESSLFVYPCKMILKTCGTTRLLLSIPVILDLAAELSLSVTAVKYSRGSFIFPG 120

Query: 787  NQPFPYTAFEHEVGFLDEHFGAMCANGGTAFMLGEP-YQGLQWHVYLADDMLPLGPEFKP 963
             QP P+ +F  EV  L++ FG +  +GG A+++G P +  L WHVY A +     PE +P
Sbjct: 121  AQPAPHRSFSEEVAVLNQFFGGL-GSGGNAYVIGNPAHPNLNWHVYYASEK----PE-QP 174

Query: 964  TYNFEVTMTDLGTEAAAQFFRDNNPKF-VSAERTTKDTGIAELKPKAIIDDYVFEPCGYS 1140
                E+ MT L TE A+ FF+++ P+   SA+  TK +GI ++ P+  I D+ F+PCGYS
Sbjct: 175  MVTIEMCMTGLNTEKASIFFKNSVPRHESSAKEMTKRSGICDIIPEMKICDFEFDPCGYS 234

Query: 1141 MNGIDNTGLITIHVTPEAHQSYASVEFSGFGEDLMAPVQELLNKVVKIFAPGKVSVTMSV 1320
            MNGI+   L TIHVTPE   SYAS E  GF    ++  + L+ +V++ F P   SV +++
Sbjct: 235  MNGINKQALSTIHVTPEDGFSYASYEAMGFKPSAIS-YRNLIERVLRCFEPANFSVAVTI 293

>sp|O65354|DCAM_HELAN S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC)
            [Contains: S-adenosylmethionine decarboxylase alpha
            chain; S-adenosylmethionine decarboxylase beta chain]
            gi|7436595|pir||T12613 adenosylmethionine decarboxylase
            (EC 4.1.1.50) - common sunflower
            gi|3153906|gb|AAC17449.1| S-adenosylmethionine
            decarboxylase [Helianthus annuus]
          Length = 361

 Score =  233 bits (595), Expect = 6e-60
 Identities = 145/356 (40%), Positives = 207/356 (57%), Gaps = 7/356 (1%)
 Frame = +1

Query: 457  FEGSEKRIEVDF-RLGPNVP--ANGLRSIPRETLDELMTLARCCIVSSRSNDKLDAYVLS 627
            FEG EKR+E+ F   GP+V   A GLRS+ +  LD+ +  A C IVSS SND LD+YVLS
Sbjct: 7    FEGFEKRLEISFFNPGPSVDPVARGLRSLTKNQLDKFLAPAECTIVSSLSNDLLDSYVLS 66

Query: 628  ESSLFVYPTKWILKTCGTTRLLNSVPRLLEVARSIGLEPRRCKYTRASFLFPENQPFPYT 807
            ESSLFVYP K I+KTCGTT+LL S+P +LE++  + L  +  +YTR SF+FP  Q FP+ 
Sbjct: 67   ESSLFVYPYKIIIKTCGTTKLLLSIPHILELSGELSLTVQSVRYTRGSFIFPGAQTFPHR 126

Query: 808  AFEHEVGFLDEHFG--AMCANGGTAFMLGEPYQGLQWHVYLAD-DMLPLGPEFKPTYNFE 978
            +F  EV  LD HFG   MC+N   A+++G   +  +WHVY A  +   L  +  P Y  E
Sbjct: 127  SFTEEVMVLDSHFGKLGMCSN---AYVMGGAEKDQKWHVYSASAESANLVTQTAPVYTLE 183

Query: 979  VTMTDLGTEAAAQFFRDNNPKFVSAERTTKDTGIAELKPKAIIDDYVFEPCGYSMNGIDN 1158
            ++MT L    A+ FF+  +    SA   T+D+GI ++ P++ I D+ F+PCGYSMN I+ 
Sbjct: 184  MSMTGLSKRNASVFFKSESS---SAAVMTEDSGIRKILPESQICDFDFDPCGYSMNAIEG 240

Query: 1159 TGLITIHVTPEAHQSYASVEFSGFGEDLMAPVQELLNKVVKIFAPGKVSVTMSVDKVDMD 1338
              + TIHVTPE   SYAS E  G+    M  +  L+ +V+  F P + SV +  ++  + 
Sbjct: 241  DAISTIHVTPEDGFSYASFEAVGYDFKSMG-LTVLIERVLACFEPSEFSVALHGNENVVK 299

Query: 1339 ATGCWGNLTMCPAGFGLQGASSQV-SPCGGKVAYYTLIEKLAAPGSPITPLHHAAS 1503
                  N  +   G+ ++    +V    GG + YY      ++ GSP + LH   S
Sbjct: 300  DLNLENN-DVNVKGYNVEETKFEVLGGEGGSMVYYGFARGGSSCGSPRSTLHRCWS 354

>gb|AAM44307.1|AF512545_1 S-adenosylmethionine decarboxylase [x Citrofortunella mitis]
          Length = 361

 Score =  233 bits (594), Expect = 8e-60
 Identities = 135/295 (45%), Positives = 181/295 (60%), Gaps = 4/295 (1%)
 Frame = +1

Query: 457  FEGSEKRIEVDFRLGPNVPAN----GLRSIPRETLDELMTLARCCIVSSRSNDKLDAYVL 624
            FEG EKR+EV F   P V A+    GLRS+ +  LDE++  A C IVSS SN+ LD+YVL
Sbjct: 10   FEGYEKRLEVSF-FEPGVFADPGGRGLRSLSKHQLDEILKPAECTIVSSLSNEYLDSYVL 68

Query: 625  SESSLFVYPTKWILKTCGTTRLLNSVPRLLEVARSIGLEPRRCKYTRASFLFPENQPFPY 804
            SESSLFVYP K I+KTCGTT+LL S+P +L++A S+ L  R  ++TR SF+F   QPFP+
Sbjct: 69   SESSLFVYPYKVIIKTCGTTKLLLSIPAILKLAESLSLSVRSVRFTRGSFIFAGAQPFPH 128

Query: 805  TAFEHEVGFLDEHFGAMCANGGTAFMLGEPYQGLQWHVYLADDMLPLGPEFKPTYNFEVT 984
             +F  EV  LD HFG       TAF++G P    +WHVY A      G      Y  E+ 
Sbjct: 129  RSFSEEVAVLDGHFGKF-GMDSTAFVMGSPDNTKRWHVYSAS--AEAGSHVNLVYTLEMC 185

Query: 985  MTDLGTEAAAQFFRDNNPKFVSAERTTKDTGIAELKPKAIIDDYVFEPCGYSMNGIDNTG 1164
            MT L  + A+ F++ N     SA   T+D+GI ++ PK+ I D+ F+PCGYSMN I+   
Sbjct: 186  MTGLDRKRASVFYKTNES---SAAMMTEDSGIRKILPKSEICDFEFDPCGYSMNSIEGDA 242

Query: 1165 LITIHVTPEAHQSYASVEFSGFGEDLMAPVQELLNKVVKIFAPGKVSVTMSVDKV 1329
            + TIHVTPE   SYAS E  G+  +++  +  LL +V+  F P + SV +  D V
Sbjct: 243  VSTIHVTPEDGFSYASFEAVGYDFEVV-KLTSLLERVLACFKPAEFSVALHSDIV 296

>dbj|BAC55114.1| S-adenosylmethionine decarboxylase [Malus x domestica]
          Length = 374

 Score =  230 bits (586), Expect = 6e-59
 Identities = 143/354 (40%), Positives = 205/354 (57%), Gaps = 14/354 (3%)
 Frame = +1

Query: 457  FEGSEKRIEVDFRLGPNVPAN----GLRSIPRETLDELMTLARCCIVSSRSNDKLDAYVL 624
            FEG EKR+EV F   P + A+    GLRS+ +  +DE++T A C IVSS SND LD+YVL
Sbjct: 10   FEGYEKRLEVSF-FEPGLFADPKGMGLRSLSKAQIDEILTPAECTIVSSLSNDDLDSYVL 68

Query: 625  SESSLFVYPTKWILKTCGTTRLLNSVPRLLEVARSIGLEPRRCKYTRASFLFPENQPFPY 804
            SESSLFVYP K I+KTCGTT+LL S+P +L++A S+ L  +  +Y+R SF+FP   P P+
Sbjct: 69   SESSLFVYPYKVIIKTCGTTKLLRSIPAILKLADSLSLAVKSVRYSRGSFIFPGAHPSPH 128

Query: 805  TAFEHEVGFLDEHFGAMCANGGTAFMLGEPYQGLQWHVYLAD----DMLPLGPEFKPTYN 972
             +F  EV  LD HFG +      A+++G P +  +WH+Y A      +L    +  PTY 
Sbjct: 129  RSFSEEVAVLDGHFGKL-GLASKAYVMGSPDKTQKWHIYSASAELASLLWGSRQSGPTYT 187

Query: 973  FEVTMTDLGTEAAAQFFRDNNPKFVSAERTTKDTGIAELKPKAIIDDYVFEPCGYSMNGI 1152
             E+ MT L  + A+ F++ +     SA   T ++GI  + P++ I D+ FEPCGYSMN I
Sbjct: 188  LEMCMTGLDRKRASVFYKSDAS---SAAGMTVESGIRNILPQSDICDFEFEPCGYSMNSI 244

Query: 1153 DNTGLITIHVTPEAHQSYASVEFSGFGEDLMAPVQELLNKVVKIFAPGKVSV---TMSVD 1323
            +   + TIHVTPE   SYAS E  G+ +     + +LL +V+  F P + S+   T S  
Sbjct: 245  EGNAVSTIHVTPEDGFSYASFETVGY-DFKDVNLTQLLYRVLDCFKPAEFSIALHTTSTA 303

Query: 1324 KVDMDATGCWGNLTMCP---AGFGLQGASSQVSPCGGKVAYYTLIEKLAAPGSP 1476
              D+DA         CP    G+   G+S +    GG V Y++ ++  +   SP
Sbjct: 304  GEDLDA--------KCPLDLKGYCCGGSSYEGLGLGGAVMYHSFVKDDSGSQSP 349

>sp|O24215|DCAM_ORYSA S-adenosylmethionine decarboxylase proenzyme (AdoMetDC) (SamDC)
            [Contains: S-adenosylmethionine decarboxylase alpha
            chain; S-adenosylmethionine decarboxylase beta chain]
            gi|6646848|emb|CAA69074.2| S-adenosylmethionine
            decarboxylase [Oryza sativa (japonica cultivar-group)]
            gi|32488575|emb|CAE03118.1| OSJNBa0067K08.26 [Oryza
            sativa (japonica cultivar-group)]
          Length = 398

 Score =  230 bits (586), Expect = 6e-59
 Identities = 140/353 (39%), Positives = 201/353 (56%), Gaps = 8/353 (2%)
 Frame = +1

Query: 457  FEGSEKRIEVDFRLGP---NVPANGLRSIPRETLDELMTLARCCIVSSRSNDKLDAYVLS 627
            FEG EKR+E+ F   P   +    GLR++ R  +D ++ LARC IVS  SN   D+YVLS
Sbjct: 17   FEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLS 76

Query: 628  ESSLFVYPTKWILKTCGTTRLLNSVPRLLEVARSIGLEPRRCKYTRASFLFPENQPFPYT 807
            ESSLF+Y  K ++KTCGTT+LL ++PR+LE+A  + +     KY+R  F+FP  QP P+ 
Sbjct: 77   ESSLFIYSDKIVIKTCGTTKLLLTIPRILELAEGLSMPLAAVKYSRGMFIFPSAQPAPHR 136

Query: 808  AFEHEVGFLDEHFGAMCANGGTAFMLGEPYQ-GLQWHVYLADDMLPLGPEFKPTYNFEVT 984
            +F  EV  L+ +FG +  +GG A+++G+P + G +WH+Y A       PE +P    E+ 
Sbjct: 137  SFSEEVAVLNRYFGHL-KSGGNAYVIGDPAKPGQKWHIYYATQ----HPE-QPMVTLEMC 190

Query: 985  MTDLGTEAAAQFFRDNNPKFVS-AERTTKDTGIAELKPKAIIDDYVFEPCGYSMNGIDNT 1161
            MT L  E A+ FF+ +     S A+  TK +GI+++ P+  I D+ FEPCGYSMN I  +
Sbjct: 191  MTGLDKEKASVFFKTSADGHTSCAKEMTKLSGISDIIPEMEICDFDFEPCGYSMNAIHGS 250

Query: 1162 GLITIHVTPEAHQSYASVEFSGFGEDLMAPVQELLNKVVKIFAPGKVSVTMSVDKVDMDA 1341
               TIHVTPE   SYAS E  GF    +A   +L+ +V++ F P + SV +++      A
Sbjct: 251  AFSTIHVTPEDGFSYASYEVVGFDASTLA-YGDLVKRVLRCFGPSEFSVAVTIFGGHGHA 309

Query: 1342 TGCWGNLTMCPAGFGLQGASSQVSPCGGKVAYYTLIEKLAAP---GSPITPLH 1491
             G W       A +       Q  PCGG + Y +       P   GSP + LH
Sbjct: 310  -GTWAKELNADA-YKCNNMVEQELPCGGLLIYQSFDATEDVPVAVGSPKSVLH 360



EST assemble image


clone accession position
1 HC088e04_r AV638608 1 532
2 HCL089a03_r AV644459 16 547
3 LCL060a08_r AV629509 97 529
4 LCL063f08_r AV629683 97 527
5 LCL082e09_r AV630676 103 527
6 HCL027f04_r AV641089 103 589
7 MXL011h10_r BP093678 106 542
8 HCL024h07_r AV640932 108 408
9 HCL062f10_r AV643039 108 613
10 HCL071a04_r AV643517 108 561
11 HCL047b05_r AV642190 108 391
12 HCL053f11_r AV642545 109 577
13 HCL002d01_r AV639644 109 579
14 CL51c08_r AV395933 113 588
15 HCL095d03_r AV644905 114 588
16 HCL016b11_r AV640433 115 402
17 MXL072e12_r BP097254 117 487
18 HCL059d02_r AV642856 117 627
19 LCL026b03_r AV627392 117 285
20 HCL067g11_r AV643337 118 603
21 HC034g02_r AV634539 122 601
22 LCL034b01_r AV627932 130 508
23 HCL058h12_r AV642835 130 595
24 MXL042d01_r BP095470 201 677
25 HCL075a06_r AV643733 208 666
26 MXL014d05_r BP093828 530 1027
27 HCL095b07_r AV644890 574 1030
28 MXL077d06_r BP097533 643 1093
29 MXL002g07_r BP093058 965 1352
30 CM051e07_r AV389859 1219 1768




Chlamydomonas reinhardtii
Kazusa DNA Research Institute