Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000638A_C01 KCC000638A_c01
(476 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC24516.1| class A calcium channel variant riA-I [Rattus nor... 36 0.26
sp|O97581|LHX3_PIG LIM/homeobox protein Lhx3 (Homeobox protein L... 35 0.58
ref|NP_055379.1| LIM homeobox protein 3 isoform b; LIM/homeodoma... 34 0.76
ref|NP_835258.1| LIM homeobox protein 3 isoform a; LIM/homeodoma... 34 0.76
gb|AAF17291.1| LHX3 protein [Homo sapiens] gi|6572501|gb|AAF1729... 34 0.76
>gb|AAC24516.1| class A calcium channel variant riA-I [Rattus norvegicus]
Length = 791
Score = 35.8 bits (81), Expect = 0.26
Identities = 36/109 (33%), Positives = 43/109 (39%), Gaps = 3/109 (2%)
Frame = -2
Query: 472 RATLPQPPLY-RLHAHYSPTARLWQSLHVPAAAALAASRS--GGNFLACRVAARCPLATP 302
R LPQ P R YSP R PAA +A + GG+ CR A R P P
Sbjct: 658 RRQLPQTPCTPRPLVSYSPAPRR------PAARRMAGPPAPPGGSPRGCRRAPRWPAHAP 711
Query: 301 DGPVAPKLGTYPSPFVLSLVFPEYGAGLRSSSPRGMMAQRRSGNYSPGH 155
+GP P+ Y P E G +PR R +G SP H
Sbjct: 712 EGP-RPRGADYTEPDSPR----EPPGGAHEPAPRSPRTPRAAGCASPRH 755
>sp|O97581|LHX3_PIG LIM/homeobox protein Lhx3 (Homeobox protein LIM-3) (Homeobox
protein P-LIM) (LIM homeobox protein 3)
gi|4091889|gb|AAC99331.1| LIM homeodomain transcription
factor [Sus scrofa]
Length = 383
Score = 34.7 bits (78), Expect = 0.58
Identities = 23/68 (33%), Positives = 31/68 (44%), Gaps = 2/68 (2%)
Frame = -2
Query: 316 PLATPDGPVAPKLGTYPSPFVLSLVFPEYGAGLRSSSPRGMMAQRR--SGNYSPGHYSPG 143
P P P A + P P + SLV+PE G GL + P G R +GN P
Sbjct: 300 PYGVPSSPAALQSLPGPQPLLSSLVYPEAGLGLVPAGPPGGPPPMRVLAGN------GPS 353
Query: 142 HDISCGNN 119
D+S G++
Sbjct: 354 SDLSTGSS 361
>ref|NP_055379.1| LIM homeobox protein 3 isoform b; LIM/homeodomain protein LHX3; LIM
homeobox protein 3 [Homo sapiens]
gi|7110145|gb|AAF36809.1|AF156889_1 LIM homeobox protein
3 isoform b [Homo sapiens]
Length = 402
Score = 34.3 bits (77), Expect = 0.76
Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Frame = -2
Query: 433 AHYSPTARLWQSLHVPAAAALAASRSGGNF------LACRVAAR-----CPLATPDGPVA 287
A P L+ SL P A S + GNF LA R P P P A
Sbjct: 269 AEMGPANGLYGSLGEPTQALGRPSGALGNFSLEHGGLAGPEQYRELRPGSPYGVPPSPAA 328
Query: 286 PKLGTYPSPFVLSLVFPEYGAGL-RSSSPRGMMAQR-RSGNYSPGHYSPGHDISCGNN 119
P+ P P + SLV+P+ GL S +P G R +GN P D+S G++
Sbjct: 329 PQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGPPPMRVLAGN------GPSSDLSTGSS 380
>ref|NP_835258.1| LIM homeobox protein 3 isoform a; LIM/homeodomain protein LHX3; LIM
homeobox protein 3 [Homo sapiens]
gi|12643415|sp|Q9UBR4|LHX3_HUMAN LIM/homeobox protein
Lhx3 gi|7110143|gb|AAF36808.1|AF156888_1 LIM homeobox
protein 3 isoform a [Homo sapiens]
gi|16565927|gb|AAL26314.1| LIM homeobox protein 3 [Homo
sapiens]
Length = 397
Score = 34.3 bits (77), Expect = 0.76
Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Frame = -2
Query: 433 AHYSPTARLWQSLHVPAAAALAASRSGGNF------LACRVAAR-----CPLATPDGPVA 287
A P L+ SL P A S + GNF LA R P P P A
Sbjct: 264 AEMGPANGLYGSLGEPTQALGRPSGALGNFSLEHGGLAGPEQYRELRPGSPYGVPPSPAA 323
Query: 286 PKLGTYPSPFVLSLVFPEYGAGL-RSSSPRGMMAQR-RSGNYSPGHYSPGHDISCGNN 119
P+ P P + SLV+P+ GL S +P G R +GN P D+S G++
Sbjct: 324 PQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGPPPMRVLAGN------GPSSDLSTGSS 375
>gb|AAF17291.1| LHX3 protein [Homo sapiens] gi|6572501|gb|AAF17292.1| LHX3 protein
[Homo sapiens]
Length = 370
Score = 34.3 bits (77), Expect = 0.76
Identities = 37/118 (31%), Positives = 48/118 (40%), Gaps = 13/118 (11%)
Frame = -2
Query: 433 AHYSPTARLWQSLHVPAAAALAASRSGGNF------LACRVAAR-----CPLATPDGPVA 287
A P L+ SL P A S + GNF LA R P P P A
Sbjct: 237 AEMGPANGLYGSLGEPTQALGRPSGALGNFSLEHGGLAGPEQYRELRPGSPYGVPPSPAA 296
Query: 286 PKLGTYPSPFVLSLVFPEYGAGL-RSSSPRGMMAQR-RSGNYSPGHYSPGHDISCGNN 119
P+ P P + SLV+P+ GL S +P G R +GN P D+S G++
Sbjct: 297 PQSLPGPQPLLSSLVYPDTSLGLVPSGAPGGPPPMRVLAGN------GPSSDLSTGSS 348
