KCC000632A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000632A_C01 KCC000632A_c01
gtgaTCCCTCACTAGAATTCATCTTCCTCCTTAGGGGTAGACTGTGTAGACACAACAAGC
GGGACCGCAACTTGGTCGCCGCCGCACCGAGCGCTCCTAGGCGCTCCCAGTCACCTCTTA
TCCACTTGAATTATAATCTGGCTCCATTTAGGTAGCCTCTCGCTCCGGATTTAGGAGGAT
CGCCGAAATGGCGTCCAAGAAGGGCACGGATGCGCCCGCAGCGCTCACGGACCCTCTGAA
GGAGGACCCGACCGTCATTCGCGATGAGGCACAGTTTCCGGAGCCTTCCCTTTACTTTAA
GGTCTTCGAGTCTGAGGCGGGCGAGCCGGAGGCGAAAATCCGTGCGGATGTGAACAAGCT
CTATGACCGCTGGATTGAGAAATACGGCCGCCGCTGGCCTGAGGATGGCATTAACACCGA
GGACATGGTGTGGCTGGCGGAGGAGGCCAACAAGCGCAAGCGGGCCAAGCCCCGGCCCCG
GGGCACAGTCGCGGCGGAGAAGACTGAGTACGAGGACGAGTTCATGCCCGACCCCACCGT
GGGCGCGCCCGTGAGCGCG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000632A_C01 KCC000632A_c01
         (559 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAK53449.1| unknown [Streptomyces aureofaciens]                     50  3e-05
pir||D29149 proline-rich protein - mouse (fragment) gi|200543|gb...    44  0.002
ref|XP_317892.1| ENSANGP00000004934 [Anopheles gambiae] gi|30175...    43  0.003
ref|ZP_00005455.1| COG1012: NAD-dependent aldehyde dehydrogenase...    34  0.005
pir||S22697 extensin - Volvox carteri (fragment) gi|21992|emb|CA...    40  0.016

>gb|AAK53449.1| unknown [Streptomyces aureofaciens]
          Length = 579

 Score = 49.7 bits (117), Expect = 3e-05
 Identities = 42/120 (35%), Positives = 46/120 (38%), Gaps = 9/120 (7%)
 Frame = -3

Query: 521 TRPRTQSSPPRLCPGAGAWPACACWPPPPAT-PCPRC*CHPQASGGR----ISQSSGHRA 357
           TRP   S  P   P A A P  A  PPPP T P PR    P A  GR      +++G RA
Sbjct: 436 TRPTAPSPAPAAPPRAAAAPTPARRPPPPPTPPVPRARRGPAAGNGRPPSTRDRTAGTRA 495

Query: 356 CSHPHGFSPPAR----PPQTRRP*SKGKAPETVPHRE*RSGPPSEGP*ALRAHPCPSWTP 189
            + P G  PP R    PP    P     A         R  PP     A R  P P   P
Sbjct: 496 PASPPGAPPPVRRRRPPPPRAPPPHHPSARNPSARATPRPRPPPRPSAAARPEPPPRAAP 555

>pir||D29149 proline-rich protein - mouse (fragment) gi|200543|gb|AAA40002.1|
           proline-rich salivary protein
          Length = 188

 Score = 43.5 bits (101), Expect = 0.002
 Identities = 34/95 (35%), Positives = 36/95 (37%)
 Frame = -3

Query: 512 RTQSSPPRLCPGAGAWPACACWPPPPATPCPRC*CHPQASGGRISQSSGHRACSHPHGFS 333
           R    PP   P  G  P     PPPPA P PR    P  +GG   +S      S P    
Sbjct: 30  RPPQGPP---PPGGPQPKPPQGPPPPAGPQPRPPQGPPPTGGPQQRSPQ----SPPPPGG 82

Query: 332 PPARPPQTRRP*SKGKAPETVPHRE*RSGPPSEGP 228
           P  RPPQ       G  P   PH     GPP  GP
Sbjct: 83  PQPRPPQ-------GPPPPAGPHPRPTQGPPPTGP 110

 Score = 40.8 bits (94), Expect = 0.012
 Identities = 37/111 (33%), Positives = 42/111 (37%), Gaps = 5/111 (4%)
 Frame = -3

Query: 545 RPRWGRA*TRPRTQSSPPRLCPGAGAWPACACWPPPPATPCPRC*CHPQASGGRISQSSG 366
           RP  G   T    Q SP    P  G  P     PPPPA P PR    P  +G +   + G
Sbjct: 58  RPPQGPPPTGGPQQRSPQSPPPPGGPQPRPPQGPPPPAGPHPRPTQGPPPTGPQPRPTQG 117

Query: 365 HRACSHPHGFSPPARP----PQTRRP*SKGKAPETVPHRE*RSGP-PSEGP 228
                 P    P   P    PQ R P  +G  P T P      GP P+ GP
Sbjct: 118 PPPTGGPQQRPPQGPPPPGGPQPRPP--QGPPPPTGPQPRPTQGPHPTGGP 166

>ref|XP_317892.1| ENSANGP00000004934 [Anopheles gambiae] gi|30175186|gb|EAA12932.2|
           ENSANGP00000004934 [Anopheles gambiae str. PEST]
          Length = 430

 Score = 42.7 bits (99), Expect = 0.003
 Identities = 47/160 (29%), Positives = 60/160 (37%)
 Frame = -3

Query: 512 RTQSSPPRLCPGAGAWPACACWPPPPATPCPRC*CHPQASGGRISQSSGHRACSHPHGFS 333
           R   SPP   P  G  PA  C PPPP+ P      HP A            +C+     S
Sbjct: 272 RLSPSPPSSPPSGGCAPAAPCAPPPPSAPS----AHPSAP-----------SCATFAPLS 316

Query: 332 PPARPPQTRRP*SKGKAPETVPHRE*RSGPPSEGP*ALRAHPCPSWTPFRRSS*IRSERL 153
           P ++    R+P +   A    PH      P   G   L A+P PS +P  +         
Sbjct: 317 PGSQRASGRQPTAGQLAGAPHPHHH-PHHPGHHGAHQLHANP-PSTSPAAQ--------- 365

Query: 152 PKWSQIIIQVDKR*LGAPRSARCGGDQVAVPLVVSTQSTP 33
              +Q   Q   + LGA  +A     Q A  LV  T STP
Sbjct: 366 ---AQAAAQAAAQALGAQAAAAVAAAQAAQSLV--TASTP 400

>ref|ZP_00005455.1| COG1012: NAD-dependent aldehyde dehydrogenases [Rhodobacter
           sphaeroides]
          Length = 752

 Score = 34.3 bits (77), Expect(2) = 0.005
 Identities = 27/63 (42%), Positives = 29/63 (45%), Gaps = 5/63 (7%)
 Frame = +3

Query: 378 RNTAAAGLRMALTPRTWCGWR-RRPTSASGPSPGPGAQSRRR----RLSTRTSSCPTPPW 542
           R  AA G R    PR   G   RRP SA G   GP  Q  RR    RLS R S   +P  
Sbjct: 212 RRAAAPGRRAGGRPRRRSGRADRRPLSARGAEGGPARQRGRRCLCPRLSERPSEGMSPVR 271

Query: 543 ARP 551
           A+P
Sbjct: 272 AQP 274

 Score = 26.9 bits (58), Expect(2) = 0.005
 Identities = 22/56 (39%), Positives = 23/56 (40%), Gaps = 7/56 (12%)
 Frame = +1

Query: 202 GHGCARSAHGPSEGGPDRHSR*GTVSG-AFPLL*G------LRV*GGRAGGENPCG 348
           G G  R+A G   GGPD     G V G  FP   G      LR    RA GE   G
Sbjct: 145 GRGAGRAARGGDPGGPDHRHPAGLVLGHEFPARGGGGVAEFLRSGPDRAPGEAASG 200

>pir||S22697 extensin - Volvox carteri (fragment) gi|21992|emb|CAA46283.1|
           extensin [Volvox carteri]
          Length = 464

 Score = 40.4 bits (93), Expect = 0.016
 Identities = 38/112 (33%), Positives = 42/112 (36%)
 Frame = -3

Query: 518 RPRTQSSPPRLCPGAGAWPACACWPPPPATPCPRC*CHPQASGGRISQSSGHRACSHPHG 339
           RP     PPR  P     P+    PPPP+ P PR    P     R S S        P  
Sbjct: 317 RPSPSPPPPRSSPSPPP-PS----PPPPSPPPPRP--SPSPPPPRSSPSPP------PPV 363

Query: 338 FSPPARPPQTRRP*SKGKAPETVPHRE*RSGPPSEGP*ALRAHPCPSWTPFR 183
            SPP  PP+   P     +P   P     S PPS  P A  A   PS  P R
Sbjct: 364 VSPPPPPPRASPPPPPASSPPPPPRPPPPSPPPSPPPPATAAANPPSPAPSR 415



EST assemble image


clone accession position
1 MXL100h09_r BP098891 1 439
2 CL50c12_r AV395776 5 547
3 HCL066d09_r AV643255 23 530
4 MXL010g05_r BP093601 27 379
5 MXL064f11_r BP096777 51 431
6 CL63a06_r AV396531 53 559
7 LCL010a08_r AV626488 59 254
8 HCL059f09_r AV642874 91 368
9 HCL045h01_r AV642114 213 447




Chlamydomonas reinhardtii
Kazusa DNA Research Institute