KCC000630A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000630A_C01 KCC000630A_c01
catcctttctccttacacgtaattaaatagataccatctcttctccgtccacatgcgacc
cttggcgggcttcaaatggcAGTGCGTCCCGAACCTCCTCAGGACCCTACCCATGACTGG
CGCACGGGGTCCAGATGAAATAAAAGATCAAATCAGCCGCCCGCCACCACGACATGGGCG
CTTACGATTTTGGTGCCTCTTCCAAAATGAATGGTTTAAGGGGTCTCCGGGCGAGCAACA
GTTTACGGAGCTACTTGACCTCGTTCAAACGTTGAACATCCCCCTCGGGGCACACACCGC
AGTCCGCACGCGTTCTCCCAGTTCTGCGTGAACGGATTGCCTAATCGCACTCTAACCTTC
ATAGGCATACAGACGCCCCCAGTAGAGCAACTGCCCGAGCCACTGCATTGCGCCGCAAGC
GCCGTCACCTCAAACACCGCGCCCGCACTGTCACCGGGAGCCAGCAATACCTCAAACACG
CAACCTCCAGTTGTTGCCTTGGCACGGCAGCAAGCTCCCAGCCCGACACCTTCCGCAGTC
CCGCGCCCTCTGTTGCAGTCCCTCGTGCAGCCACGAATGCCGTGGGCAGGTGCGCGCAAC
AGTCCACGCCCCTTGGCGGAACATACTAAAAAAACACGGTTCTAAACACCGATCCTCTGC
ATCGAGGCACCGGCACACACACCCATTCATGGCCGTAAACAGACATAAAATCCACGCGTC
ACAAGCACGGGCCAGCGTACAGAGCCGTACAGAGCATACACCGTTTGCAGCGGAatacac
acattaaattggcacatggacacacacacacacacacacacaaacgtgaaactgcatgca
tgcatgacatgcgg


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000630A_C01 KCC000630A_c01
         (854 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAL55824.1|AF318317_1 unknown [Homo sapiens]                        47  3e-04
ref|NP_079268.1| hypothetical protein FLJ12547 [Homo sapiens] gi...    45  0.002
dbj|BAC35633.1| unnamed protein product [Mus musculus]                 44  0.003
ref|XP_148820.1| hypothetical protein XP_148820 [Mus musculus]         44  0.003
dbj|BAC87611.1| unnamed protein product [Homo sapiens]                 44  0.004

>gb|AAL55824.1|AF318317_1 unknown [Homo sapiens]
          Length = 400

 Score = 47.4 bits (111), Expect = 3e-04
 Identities = 35/116 (30%), Positives = 44/116 (37%), Gaps = 20/116 (17%)
 Frame = -3

Query: 846 HACMQFHVCVCVCVCV--------------HVPI*CVYSAANGVCSVRLCTLARACDAWI 709
           + C     CVCVCVCV              HV I CVY        V  C     C +  
Sbjct: 131 YVCASVCACVCVCVCVCVHVCMRVCAHQCLHVCI-CVYVCVCARICVCACVYVCVCISVC 189

Query: 708 LCLFTAMNGCVCRCLDA---EDRCLEPCFFSMFRQGAWTV---ARTCPRHSWLHEG 559
            C++  ++ CVC C+ A      C+  C  +    GA  V     TCPR S    G
Sbjct: 190 ACVYVCVHLCVCACVHACVCVCACVHLCVCACAHVGATLVCICTYTCPRPSMFAHG 245

 Score = 42.4 bits (98), Expect = 0.010
 Identities = 24/67 (35%), Positives = 37/67 (54%), Gaps = 6/67 (8%)
 Frame = -3

Query: 846 HACMQFHVCVCVCVCVHVPI*-----CVYSAANGVCS-VRLCTLARACDAWILCLFTAMN 685
           H CM+ +VCVC+CV ++V +      CVY+    VC  +RLC   R C +   C++    
Sbjct: 67  HVCMRVYVCVCICVHLYVCVCVCLCACVYAC---VCMCLRLCV--RLCVSVCACVYA--- 118

Query: 684 GCVCRCL 664
            C+C C+
Sbjct: 119 -CICMCI 124

 Score = 39.7 bits (91), Expect = 0.064
 Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 16/87 (18%)
 Frame = -3

Query: 846 HACMQ---FHVCVCVCVCVHVPI-------------*CVYSAANGVCSVRLCTLARACDA 715
           H CM    F +CV VCVCVHV +              CV  +     SV +C     C  
Sbjct: 18  HLCMHVCAFCMCVYVCVCVHVHVCASVCAFVCMCVCVCVCGSVCAFVSVHVCMRVYVC-- 75

Query: 714 WILCLFTAMNGCVCRCLDAEDRCLEPC 634
             +C+   +  CVC CL A   C+  C
Sbjct: 76  --VCICVHLYVCVCVCLCA---CVYAC 97

 Score = 38.5 bits (88), Expect = 0.14
 Identities = 36/143 (25%), Positives = 51/143 (35%), Gaps = 8/143 (5%)
 Frame = -2

Query: 844 CMHAVSRLCVCVCVCPCANL---MCVFRCKRCMLCTALYAGPCL*RVDFMSVYGHEWVCV 674
           C H    +C+CV VC CA +    CV+ C    +C  +Y   C+       V+    VC 
Sbjct: 155 CAHQCLHVCICVYVCVCARICVCACVYVCVCISVCACVYV--CVHLCVCACVHACVCVCA 212

Query: 673 PVPRCRGSVFRTVFF*YVPPRGVDCCAHLPTAFVA-ARGTATEGAGLRKVSGWELAAVPR 497
            V  C                 V  CAH+    V     T    +       W +A  PR
Sbjct: 213 CVHLC-----------------VCACAHVGATLVCICTYTCPRPSMFAHGGRWGVAGRPR 255

Query: 496 QQL----EVACLRYCWLPVTVRA 440
           Q +    +    R   LP +V+A
Sbjct: 256 QPMSLGVQAQAQRVIHLPQSVQA 278

 Score = 37.4 bits (85), Expect = 0.32
 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 14/73 (19%)
 Frame = -3

Query: 840 CMQFHVC------VCVCVCVHVPI*CVYSAANGVCSVRLCTLARACDAWIL--------C 703
           C+  HVC      VC+CVCV     CV  +     SV +C     C    +        C
Sbjct: 35  CVHVHVCASVCAFVCMCVCV-----CVCGSVCAFVSVHVCMRVYVCVCICVHLYVCVCVC 89

Query: 702 LFTAMNGCVCRCL 664
           L   +  CVC CL
Sbjct: 90  LCACVYACVCMCL 102

 Score = 36.6 bits (83), Expect = 0.54
 Identities = 29/93 (31%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
 Frame = -3

Query: 852 AC-HACMQFHVCVCVCVCVHVPI*CVYSAANGVCSVRLCTLARACDAWILCLFTAMNGCV 676
           AC + C+   VC CV VCVH+   CV            C    AC    +C+   ++ CV
Sbjct: 178 ACVYVCVCISVCACVYVCVHL---CV------------CACVHAC----VCVCACVHLCV 218

Query: 675 CRCLDAEDRCLEPCFF-----SMFRQGA-WTVA 595
           C C       +  C +     SMF  G  W VA
Sbjct: 219 CACAHVGATLVCICTYTCPRPSMFAHGGRWGVA 251

 Score = 35.4 bits (80), Expect = 1.2
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
 Frame = -3

Query: 840 CMQFHVCVCVC------VCVHVPI*CVYSAANGVCSVRLCTLARACDAWILCLFTAMNGC 679
           C++ HV +C+C      +C+HV   C +     VC   +C     C +  +C F  M  C
Sbjct: 2   CIRVHVSMCMCVHVCVHLCMHV---CAFCMCVYVC---VCVHVHVCAS--VCAFVCMCVC 53

Query: 678 VCRC 667
           VC C
Sbjct: 54  VCVC 57

>ref|NP_079268.1| hypothetical protein FLJ12547 [Homo sapiens]
           gi|10434098|dbj|BAB14128.1| unnamed protein product
           [Homo sapiens]
          Length = 307

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 21/59 (35%), Positives = 29/59 (48%)
 Frame = -3

Query: 840 CMQFHVCVCVCVCVHVPI*CVYSAANGVCSVRLCTLARACDAWILCLFTAMNGCVCRCL 664
           C+  H+CVCV VCV   + CV+        V +C   R C    +C+   +  CVC CL
Sbjct: 6   CVWVHICVCVPVCVGAHL-CVW--------VHICVCVRLCGCTFVCVCACVCACVCGCL 55

 Score = 43.5 bits (101), Expect = 0.004
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 5/64 (7%)
 Frame = -3

Query: 840 CMQFHVCVCVCVCVHVPI*CVYSAANGVC-----SVRLCTLARACDAWILCLFTAMNGCV 676
           C+  H+CVCVC+CV V I         +C      V LC     C    LC++  +  CV
Sbjct: 196 CVWVHICVCVCLCVWVHICVCACVWVHICVCVPVCVCLCVWVHICVCVCLCVWVHICVCV 255

Query: 675 CRCL 664
           C C+
Sbjct: 256 CACV 259

 Score = 42.0 bits (97), Expect = 0.013
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -3

Query: 843 ACMQFHVCVCVCVCVHVPI*C--VYSAANGVCSVRLCTLARACDAWILCLFTAMNGCVCR 670
           AC+  H+CVC  VCV V   C   +        V +C  A  C    +C+   + GC+C 
Sbjct: 66  ACVWVHICVCASVCVPV---CGGAHLCVRLCVGVHICVCACVCGCTFVCVCACVCGCLCV 122

Query: 669 C 667
           C
Sbjct: 123 C 123

 Score = 38.9 bits (89), Expect = 0.11
 Identities = 22/74 (29%), Positives = 30/74 (39%), Gaps = 15/74 (20%)
 Frame = -3

Query: 840 CMQFHVCVCVCVCVHV---------------PI*CVYSAANGVCSVRLCTLARACDAWIL 706
           C+  H+CVC+CVC  V                  CV +   G   V +C     C    +
Sbjct: 134 CVGAHLCVCLCVCACVWGCTFVCVCACVWGCTFVCVCACVCGCTFVCVCACVCGCTFVCV 193

Query: 705 CLFTAMNGCVCRCL 664
           CL   ++ CVC CL
Sbjct: 194 CLCVWVHICVCVCL 207

 Score = 38.5 bits (88), Expect = 0.14
 Identities = 25/87 (28%), Positives = 32/87 (36%), Gaps = 2/87 (2%)
 Frame = -3

Query: 840 CMQFHVCVC--VCVCVHVPI*CVYSAANGVCSVRLCTLARACDAWILCLFTAMNGCVCRC 667
           C+  H+CVC  VC C  V +         VC   LC          +CL    + CVC C
Sbjct: 93  CVGVHICVCACVCGCTFVCVCACVCGCLCVCGAHLCV--------CVCLCVGAHLCVCLC 144

Query: 666 LDAEDRCLEPCFFSMFRQGAWTVARTC 586
           + A   C+  C F       W     C
Sbjct: 145 VCA---CVWGCTFVCVCACVWGCTFVC 168

 Score = 38.1 bits (87), Expect = 0.19
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
 Frame = -2

Query: 847 SCMHAVSRLCVCVCVCPC-----ANL-MCVFRCKRCMLCTALYAGPCL*RVDFMSVYGHE 686
           +C+   + +CVC CVC C     A+L +CV  C    LC  L    C+    F+ V    
Sbjct: 102 ACVCGCTFVCVCACVCGCLCVCGAHLCVCVCLCVGAHLCVCLCVCACVWGCTFVCVCACV 161

Query: 685 WVCVPVPRC 659
           W C  V  C
Sbjct: 162 WGCTFVCVC 170

 Score = 35.4 bits (80), Expect = 1.2
 Identities = 20/59 (33%), Positives = 26/59 (43%)
 Frame = -3

Query: 840 CMQFHVCVCVCVCVHVPI*CVYSAANGVCSVRLCTLARACDAWILCLFTAMNGCVCRCL 664
           C    VC CVC C  V +         VC V LC     C    LC++  ++ CVC C+
Sbjct: 164 CTFVCVCACVCGCTFVCVCACVCGCTFVC-VCLCVWVHICVCVCLCVW--VHICVCACV 219

 Score = 35.0 bits (79), Expect = 1.6
 Identities = 19/61 (31%), Positives = 26/61 (42%)
 Frame = -3

Query: 846 HACMQFHVCVCVCVCVHVPI*CVYSAANGVCSVRLCTLARACDAWILCLFTAMNGCVCRC 667
           H C+  H+CVCV +C             G   V +C    AC    LC++     CVC C
Sbjct: 22  HLCVWVHICVCVRLC-------------GCTFVCVCACVCACVCGCLCVWGTF-VCVCAC 67

Query: 666 L 664
           +
Sbjct: 68  V 68

 Score = 34.3 bits (77), Expect = 2.7
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = -3

Query: 846 HACMQFHVCVCVCVCVHVPI*CVYSAANGVCSVRLCTLARACDAWILCLFTAMNGC 679
           H C+   VCVC+CV VH+   CV         V LC     C     C+  A  GC
Sbjct: 222 HICVCVPVCVCLCVWVHI---CV--------CVCLCVWVHICVCVCACVCVAGPGC 266

 Score = 33.1 bits (74), Expect = 6.0
 Identities = 19/58 (32%), Positives = 27/58 (45%)
 Frame = -2

Query: 847 SCMHAVSRLCVCVCVCPCANLMCVFRCKRCMLCTALYAGPCL*RVDFMSVYGHEWVCV 674
           +C+   + +CVC CVC C   +CV  C    +C   +   CL       V+ H  VCV
Sbjct: 159 ACVWGCTFVCVCACVCGC-TFVCVCAC----VCGCTFVCVCL------CVWVHICVCV 205

>dbj|BAC35633.1| unnamed protein product [Mus musculus]
          Length = 126

 Score = 44.3 bits (103), Expect = 0.003
 Identities = 24/54 (44%), Positives = 29/54 (53%)
 Frame = +3

Query: 660 HRGTGTHTHSWP*TDIKSTRHKHGPAYRAVQSIHRLQRNTHIKLAHGHTHTHTH 821
           H  T THTH++    I  T HKH P    +  IH    NT+I+  H H HTHTH
Sbjct: 40  HTHTYTHTHTYTCVPIH-THHKHIPFLYMLPYIH----NTYIRYIHKHKHTHTH 88

>ref|XP_148820.1| hypothetical protein XP_148820 [Mus musculus]
          Length = 129

 Score = 43.9 bits (102), Expect = 0.003
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
 Frame = -3

Query: 846 HACMQFHVCVCVCVCVHVPI*CVYSAANGVCSVRLCTLARAC----DAWILCLFTAMNGC 679
           + CM  +VCVC+CVCV V + CV S       V +C     C    + W +C+   ++ C
Sbjct: 16  YVCMYVYVCVCLCVCVFVCV-CVVSVVCVYAFVYMCICVSMCFCQWNEWHVCMCMYVDMC 74

Query: 678 VC-RCLDAEDRC 646
           V   CL    +C
Sbjct: 75  VVFMCLCIRGKC 86

 Score = 35.4 bits (80), Expect = 1.2
 Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 21/83 (25%)
 Frame = -1

Query: 845 MHACSFTFVCVCVCVSMCQFNVCIPLQTVYALYGSVRWPVLVTRGF------------YV 702
           M+ C + +VCVC+CV  C F VC+ + +V  +Y  V   + V+  F            YV
Sbjct: 15  MYVCMYVYVCVCLCV--CVF-VCVCVVSVVCVYAFVYMCICVSMCFCQWNEWHVCMCMYV 71

Query: 701 ---------CLRP*MGVCAGASM 660
                    C+R   GVCA  S+
Sbjct: 72  DMCVVFMCLCIRGKCGVCACVSV 94

>dbj|BAC87611.1| unnamed protein product [Homo sapiens]
          Length = 201

 Score = 43.5 bits (101), Expect = 0.004
 Identities = 27/74 (36%), Positives = 37/74 (49%), Gaps = 3/74 (4%)
 Frame = -3

Query: 840 CMQFHVCVCVCVCVHVPI*CVYSAANGVC---SVRLCTLARACDAWILCLFTAMNGCVCR 670
           C+   VC+CVCVC+H+ + CV      VC   SV +C     C    +C++  +  CVC 
Sbjct: 98  CLCVCVCLCVCVCLHLCV-CV-GLCVSVCFCVSVCVCLCVCVCICVFVCVWVCVCLCVCV 155

Query: 669 CLDAEDRCLEPCFF 628
           CL     CL  C F
Sbjct: 156 CLCV---CLCLCVF 166

 Score = 41.6 bits (96), Expect = 0.017
 Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
 Frame = -3

Query: 849 CHACMQFHVCVCVCVCVHVPI---*CVYSAANGVC---SVRLCT-LARACDAWILCLFTA 691
           C  C+   VCVC+CVCV V +    CV S +  +C   SV LC  L   C    +CL   
Sbjct: 19  CVLCVSVCVCVCLCVCVCVCVCLCLCVLSVSVCLCVCVSVCLCVCLVSVC--LCVCLCVC 76

Query: 690 MNGCVCRCL 664
           ++ C+C CL
Sbjct: 77  VSVCLCVCL 85

 Score = 40.0 bits (92), Expect = 0.049
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -3

Query: 840 CMQFHVCVCVCVCVHVPI*CVYSAANGVCSVRLCTLARACDAWILCLFTAM--NGCVCRC 667
           C+   VC+CVCVC+ V + CV+        V LC     C    +C+F ++  + CVC C
Sbjct: 126 CVSVCVCLCVCVCICVFV-CVWVCVCLCVCVCLCVCLCLCVFLCVCVFVSVCVSVCVCVC 184

Query: 666 L 664
           +
Sbjct: 185 M 185

 Score = 38.1 bits (87), Expect = 0.19
 Identities = 26/76 (34%), Positives = 33/76 (43%)
 Frame = -3

Query: 849 CHACMQFHVCVCVCVCVHVPI*CVYSAANGVCSVRLCTLARACDAWILCLFTAMNGCVCR 670
           C  C    VCVCVCVCV     CV         V LC     C    LC+  +++ C+C 
Sbjct: 8   CEGC----VCVCVCVCVLCVSVCV--------CVCLCVCVCVCVCLCLCVL-SVSVCLCV 54

Query: 669 CLDAEDRCLEPCFFSM 622
           C+     CL  C  S+
Sbjct: 55  CVSV---CLCVCLVSV 67

 Score = 35.8 bits (81), Expect = 0.92
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 844 CMHAVSRLCVCVCVCPCANLMCVFRCKRCMLCTALYAGPCL 722
           C+     +CVC+CVC C   +CV  C    LC  ++   C+
Sbjct: 140 CVFVCVWVCVCLCVCVC---LCVCLCLCVFLCVCVFVSVCV 177

 Score = 34.7 bits (78), Expect = 2.0
 Identities = 22/54 (40%), Positives = 27/54 (49%)
 Frame = -2

Query: 820 CVCVCVCPCANLMCVFRCKRCMLCTALYAGPCL*RVDFMSVYGHEWVCVPVPRC 659
           CVCVCVC C  ++CV  C    LC  +    CL  +  +SV     VCV V  C
Sbjct: 11  CVCVCVCVC--VLCVSVCVCVCLCVCVCVCVCL-CLCVLSVSVCLCVCVSVCLC 61

 Score = 34.3 bits (77), Expect = 2.7
 Identities = 23/67 (34%), Positives = 29/67 (42%), Gaps = 9/67 (13%)
 Frame = -3

Query: 840 CMQFHVCVC---------VCVCVHVPI*CVYSAANGVCSVRLCTLARACDAWILCLFTAM 688
           C+   VCVC         VC+CV     CV S    VC V +C     C    +CL   +
Sbjct: 32  CVCVCVCVCLCLCVLSVSVCLCV-----CV-SVCLCVCLVSVCLCVCLCVCVSVCLCVCL 85

Query: 687 NGCVCRC 667
           + CVC C
Sbjct: 86  HLCVCVC 92

 Score = 34.3 bits (77), Expect = 2.7
 Identities = 22/62 (35%), Positives = 28/62 (44%)
 Frame = -2

Query: 844 CMHAVSRLCVCVCVCPCANLMCVFRCKRCMLCTALYAGPCL*RVDFMSVYGHEWVCVPVP 665
           C+     LCVCVC+C     +CV+ C    +C  L    CL    F+ V     VCV V 
Sbjct: 126 CVSVCVCLCVCVCICV---FVCVWVCVCLCVCVCLCV--CLCLCVFLCVCVFVSVCVSVC 180

Query: 664 RC 659
            C
Sbjct: 181 VC 182

 Score = 33.1 bits (74), Expect = 6.0
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = -2

Query: 844 CMHAVSRLCVCVC--VCPCANLMCVFRCKRCMLCTALYAGPCL*RVDFMSVYGHEWVCVP 671
           C+     LCVCVC  +C C  L CV  C    +C  L    C+       V+   WVCV 
Sbjct: 98  CLCVCVCLCVCVCLHLCVCVGL-CVSVCFCVSVCVCLCVCVCI------CVFVCVWVCVC 150

Query: 670 VPRC 659
           +  C
Sbjct: 151 LCVC 154



EST assemble image


clone accession position
1 CL50a07_r AV395746 1 544
2 CM068g04_r AV391045 238 854




Chlamydomonas reinhardtii
Kazusa DNA Research Institute