KCC000622A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000622A_C01 KCC000622A_c01
cgcacgcaggcagagctggaggacaccatcctgcacctgctgtccaccgccaccggctcg
ctgctggacaacgtgacgctGATCAACACGCTGGACCAGTCCAAGACCACCTGGGAGGAG
GTCAACGCCTCACTGGCCGTGGCGGAGGAGACGCAGAAGAAGATTGAGGCGGCTAGCCAG
CTGTACCGACCTTGCTCGGTCCGGGCCTCGGTCCTGTACTTCGTGCTCAACGACCTGTCC
ACCATCGACCCCATGTACCAGTTCTCGCTGGACGCCTACAACGACCTGTTCCTGCTGTCC
ATCAAGAACAGCCCCAAGAATGACAACCTGGCGGAGCGCATCAAGTCGCTCAATGACTTC
CACACCTACGCCGTGTACGAGTACACCTCGCGCGGCCTGTTCGAGCGGCACAAGCTGCTG
CTGTCGCTGCAGATGTGCGTGCGCATCCTGCAGACCGCCAACCAGGTCAACACCGAGGAG
TGGCAGTTCTTCCTGCGCGGCGGCACCGTGCTGGACCGCTCCTCGCAGCCCAACAACCCG
TCACAGGAGTGGATCTCGGAGGAGGCCTGGGACAACATAACCGAGCTTGACGCGCTGCCC
AACTTCAAGGGCGTCGTGTCCAGCTTCGAGTCCAACCTGTGCGAGTGGGAGGCCTG


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000622A_C01 KCC000622A_c01
         (656 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q9MBF8|DY1B_CHLRE Dynein 1-beta heavy chain, flagellar inner ...   430  e-120
ref|XP_126450.2| similar to 1-beta dynein [Drosophila melanogast...   252  4e-66
dbj|BAC87476.1| unnamed protein product [Homo sapiens]                249  3e-65
ref|XP_085578.4| similar to 1-beta dynein [Homo sapiens]              249  3e-65
gb|EAA41168.1| GLP_38_45618_28885 [Giardia lamblia ATCC 50803]        229  3e-59

>sp|Q9MBF8|DY1B_CHLRE Dynein 1-beta heavy chain, flagellar inner arm I1 complex (1-beta
            DHC) (Dynein 1, subspecies f) gi|9409781|emb|CAB99316.1|
            1 beta dynein heavy chain [Chlamydomonas reinhardtii]
          Length = 4513

 Score =  430 bits (1106), Expect = e-120
 Identities = 216/218 (99%), Positives = 217/218 (99%)
 Frame = +1

Query: 1    RTQAELEDTILHLLSTATGSLLDNVTLINTLDQSKTTWEEVNASLAVAEETQKKIEAASQ 180
            RTQAELEDTILHLLSTATGSLLDNVTLINTLDQSKTTWEEVNASLAVAEETQKKIEAASQ
Sbjct: 3632 RTQAELEDTILHLLSTATGSLLDNVTLINTLDQSKTTWEEVNASLAVAEETQKKIEAASQ 3691

Query: 181  LYRPCSVRASVLYFVLNDLSTIDPMYQFSLDAYNDLFLLSIKNSPKNDNLAERIKSLNDF 360
            LYRPCSVRASVLYFVLNDLSTIDPMYQFSLDAYNDLFLLSIKNSPKNDNLAERIKSLNDF
Sbjct: 3692 LYRPCSVRASVLYFVLNDLSTIDPMYQFSLDAYNDLFLLSIKNSPKNDNLAERIKSLNDF 3751

Query: 361  HTYAVYEYTSRGLFERHKLLLSLQMCVRILQTANQVNTEEWQFFLRGGTVLDRSSQPNNP 540
            HTYAVY+YTSRGLFERHKLLLSLQMCVRILQTANQVNTEEWQFFLRGGTVLDRSSQPNNP
Sbjct: 3752 HTYAVYKYTSRGLFERHKLLLSLQMCVRILQTANQVNTEEWQFFLRGGTVLDRSSQPNNP 3811

Query: 541  SQEWISEEAWDNITELDALPNFKGVVSSFESNLCEWEA 654
            SQEWISEEAWDNITELDALPNFKGVVSSFESNL EWEA
Sbjct: 3812 SQEWISEEAWDNITELDALPNFKGVVSSFESNLGEWEA 3849

>ref|XP_126450.2| similar to 1-beta dynein [Drosophila melanogaster] [Mus musculus]
            gi|29243996|ref|NP_808285.1| 1-beta dynein [Mus musculus]
            gi|26325730|dbj|BAC26619.1| unnamed protein product [Mus
            musculus]
          Length = 1472

 Score =  252 bits (643), Expect = 4e-66
 Identities = 124/216 (57%), Positives = 156/216 (71%)
 Frame = +1

Query: 1    RTQAELEDTILHLLSTATGSLLDNVTLINTLDQSKTTWEEVNASLAVAEETQKKIEAASQ 180
            R   ELED IL LL+ ATGSLLD+V L+NTL  SK T  EV   L  +E T+  I+ A +
Sbjct: 591  RKLKELEDEILRLLNEATGSLLDDVQLVNTLQTSKITATEVTEQLETSETTEINIDLARE 650

Query: 181  LYRPCSVRASVLYFVLNDLSTIDPMYQFSLDAYNDLFLLSIKNSPKNDNLAERIKSLNDF 360
             YRPC+ RASVL+FVLND+  IDPMYQFSLDAY  LF+LSI  S +++ L +RI+ LND+
Sbjct: 651  AYRPCAQRASVLFFVLNDMGRIDPMYQFSLDAYIGLFILSIDKSHRSNKLEDRIEYLNDY 710

Query: 361  HTYAVYEYTSRGLFERHKLLLSLQMCVRILQTANQVNTEEWQFFLRGGTVLDRSSQPNNP 540
            HTYAVY YT R LFERHKLL S  MC +IL+T+ ++N +E+ FFLRGG VLDR  Q +NP
Sbjct: 711  HTYAVYRYTCRTLFERHKLLFSFHMCAKILETSGKLNMDEYNFFLRGGVVLDREGQMDNP 770

Query: 541  SQEWISEEAWDNITELDALPNFKGVVSSFESNLCEW 648
               W+++  WDNITELD L NF G+++SFE    +W
Sbjct: 771  CTSWLADAYWDNITELDKLTNFHGLMNSFEQYPRDW 806

>dbj|BAC87476.1| unnamed protein product [Homo sapiens]
          Length = 901

 Score =  249 bits (636), Expect = 3e-65
 Identities = 122/216 (56%), Positives = 154/216 (70%)
 Frame = +1

Query: 1    RTQAELEDTILHLLSTATGSLLDNVTLINTLDQSKTTWEEVNASLAVAEETQKKIEAASQ 180
            R   ELED IL LL+ ATGSLLD+V L+NTL  SK T  EV   L  +E T+   + A +
Sbjct: 484  RKLKELEDEILRLLNEATGSLLDDVQLVNTLHTSKITATEVTEQLETSETTEINTDLARE 543

Query: 181  LYRPCSVRASVLYFVLNDLSTIDPMYQFSLDAYNDLFLLSIKNSPKNDNLAERIKSLNDF 360
             YRPC+ RAS+L+FVLND+  IDPMYQFSLDAY  LF+LSI  S +++ L +RI  LND+
Sbjct: 544  AYRPCAQRASILFFVLNDMGCIDPMYQFSLDAYISLFILSIDKSHRSNKLEDRIDYLNDY 603

Query: 361  HTYAVYEYTSRGLFERHKLLLSLQMCVRILQTANQVNTEEWQFFLRGGTVLDRSSQPNNP 540
            HTYAVY YT R LFERHKLL S  MC +IL+T+ ++N +E+ FFLRGG VLDR  Q +NP
Sbjct: 604  HTYAVYRYTCRTLFERHKLLFSFHMCAKILETSGKLNMDEYNFFLRGGVVLDREGQMDNP 663

Query: 541  SQEWISEEAWDNITELDALPNFKGVVSSFESNLCEW 648
               W+++  WDNITELD L NF G+++SFE    +W
Sbjct: 664  CSSWLADAYWDNITELDKLTNFHGLMNSFEQYPRDW 699

>ref|XP_085578.4| similar to 1-beta dynein [Homo sapiens]
          Length = 3914

 Score =  249 bits (636), Expect = 3e-65
 Identities = 122/216 (56%), Positives = 154/216 (70%)
 Frame = +1

Query: 1    RTQAELEDTILHLLSTATGSLLDNVTLINTLDQSKTTWEEVNASLAVAEETQKKIEAASQ 180
            R   ELED IL LL+ ATGSLLD+V L+NTL  SK T  EV   L  +E T+   + A +
Sbjct: 3023 RKLKELEDEILRLLNEATGSLLDDVQLVNTLHTSKITATEVTEQLETSETTEINTDLARE 3082

Query: 181  LYRPCSVRASVLYFVLNDLSTIDPMYQFSLDAYNDLFLLSIKNSPKNDNLAERIKSLNDF 360
             YRPC+ RAS+L+FVLND+  IDPMYQFSLDAY  LF+LSI  S +++ L +RI  LND+
Sbjct: 3083 AYRPCAQRASILFFVLNDMGCIDPMYQFSLDAYISLFILSIDKSHRSNKLEDRIDYLNDY 3142

Query: 361  HTYAVYEYTSRGLFERHKLLLSLQMCVRILQTANQVNTEEWQFFLRGGTVLDRSSQPNNP 540
            HTYAVY YT R LFERHKLL S  MC +IL+T+ ++N +E+ FFLRGG VLDR  Q +NP
Sbjct: 3143 HTYAVYRYTCRTLFERHKLLFSFHMCAKILETSGKLNMDEYNFFLRGGVVLDREGQMDNP 3202

Query: 541  SQEWISEEAWDNITELDALPNFKGVVSSFESNLCEW 648
               W+++  WDNITELD L NF G+++SFE    +W
Sbjct: 3203 CSSWLADAYWDNITELDKLTNFHGLMNSFEQYPRDW 3238

>gb|EAA41168.1| GLP_38_45618_28885 [Giardia lamblia ATCC 50803]
          Length = 5577

 Score =  229 bits (584), Expect = 3e-59
 Identities = 111/211 (52%), Positives = 150/211 (70%)
 Frame = +1

Query: 16   LEDTILHLLSTATGSLLDNVTLINTLDQSKTTWEEVNASLAVAEETQKKIEAASQLYRPC 195
            LED IL LL+T++GSLLD+  LI TL+ SK T  E+   L  +  T+KKI+ A + Y+P 
Sbjct: 4633 LEDEILRLLATSSGSLLDDEELIATLENSKVTSAEITKQLETSAITEKKIDMARRAYQPV 4692

Query: 196  SVRASVLYFVLNDLSTIDPMYQFSLDAYNDLFLLSIKNSPKNDNLAERIKSLNDFHTYAV 375
            S RAS+LYFVL DL ++DPMYQFSL+AY  LF+ SI NS K+++++ RI+ LND+HTYAV
Sbjct: 4693 SERASLLYFVLEDLGSVDPMYQFSLEAYMKLFINSINNSQKHEDVSARIRLLNDYHTYAV 4752

Query: 376  YEYTSRGLFERHKLLLSLQMCVRILQTANQVNTEEWQFFLRGGTVLDRSSQPNNPSQEWI 555
            Y+Y  RGLF RHK+LLSL MCV+IL++  ++N  E+ F L+GG V D+S QP NP   WI
Sbjct: 4753 YKYCCRGLFTRHKILLSLHMCVKILESYGRINMSEYAFLLKGGQVFDKSQQPPNPDPTWI 4812

Query: 556  SEEAWDNITELDALPNFKGVVSSFESNLCEW 648
            S   WD++  LD +P F  ++ S E  L +W
Sbjct: 4813 SGAMWDSLCILDKMPAFSNLLPSIEQRLKDW 4843



EST assemble image


clone accession position
1 MXL058d12_r BP096420 1 365
2 CL49b01_r AV397716 159 656
3 MXL097g03_r BP098709 269 371




Chlamydomonas reinhardtii
Kazusa DNA Research Institute