Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000621A_C01 KCC000621A_c01
(553 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO32311.1| putative chloroplast 50S ribosomal protein L6 [Or... 173 2e-42
ref|NP_172011.1| ribosomal protein L6p family [Arabidopsis thali... 165 3e-40
sp|O24703|RL6_SYNP6 50S ribosomal protein L6 gi|2446904|dbj|BAA2... 159 2e-38
ref|NP_765363.1| 50S ribosomal protein L6 [Staphylococcus epider... 155 4e-37
ref|NP_599777.1| ribosomal protein L6 [Corynebacterium glutamicu... 155 4e-37
>gb|AAO32311.1| putative chloroplast 50S ribosomal protein L6 [Oryza sativa
(japonica cultivar-group)]
Length = 226
Score = 173 bits (438), Expect = 2e-42
Identities = 83/166 (50%), Positives = 119/166 (71%), Gaps = 1/166 (0%)
Frame = +3
Query: 57 RLCVVAKDSRIGRAPITVPKGVTVTLEGQLVRVKGPNGTLEQTLSPLVKI-EQADGKLKL 233
R + K+SRIG+ PI VP VT+TLE Q ++ KGP G L VK+ ++ GKL++
Sbjct: 39 RKTIECKESRIGKKPIEVPSNVTLTLEEQFIKAKGPLGELSLNYPGEVKVVKEESGKLRV 98
Query: 234 FKLADDRVAMSQHGLNRSLVNNLVVGVSTGFEKRMEMVGTGYRAAVAGKDLTLNVGYSKP 413
K + + A HGL R+L +N++VGVS GF+K++++VG GYRAAV GKDL +N+G+S P
Sbjct: 99 SKTVETKRANQMHGLFRTLTDNIIVGVSKGFDKKLQLVGVGYRAAVEGKDLVMNLGFSHP 158
Query: 414 RVLAIPEGLKVVVEKNTTLVISGADKVKVGDFCATIRRQRPPEPYK 551
+A+PEGLKV VE+NT +++SG DK ++G F A+I++ RPPEPYK
Sbjct: 159 VRMAVPEGLKVKVEENTRIIVSGYDKSEIGQFAASIKKWRPPEPYK 204
>ref|NP_172011.1| ribosomal protein L6p family [Arabidopsis thaliana]
gi|25295056|pir||C86186 hypothetical protein [imported]
- Arabidopsis thaliana gi|2388578|gb|AAB71459.1| Similar
to Mycobacterium RlpF (gb|Z84395). ESTs
gb|T75785,gb|R30580,gb|T04698 come from this gene.
[Arabidopsis thaliana]
gi|13430706|gb|AAK25975.1|AF360265_1 putative
chloroplast 50S ribosomal protein L6 [Arabidopsis
thaliana] gi|14532906|gb|AAK64135.1| putative
chloroplast 50S ribosomal protein L6 [Arabidopsis
thaliana] gi|21553840|gb|AAM62933.1| putative
chloroplast 50S ribosomal protein L6 [Arabidopsis
thaliana]
Length = 223
Score = 165 bits (418), Expect = 3e-40
Identities = 87/173 (50%), Positives = 119/173 (68%), Gaps = 1/173 (0%)
Frame = +3
Query: 36 AAVSRSSRLCVVAKDSRIGRAPITVPKGVTVTLEGQLVRVKGPNGTLEQTLSPLVKI-EQ 212
A V SS+ + K+SRIG+ PI VP VT+ LEGQ ++VKGP G L T V++ ++
Sbjct: 30 AQVGYSSKT-IECKESRIGKQPIAVPSNVTIALEGQDLKVKGPLGELALTYPREVELTKE 88
Query: 213 ADGKLKLFKLADDRVAMSQHGLNRSLVNNLVVGVSTGFEKRMEMVGTGYRAAVAGKDLTL 392
G L++ K + R A HGL R+L +N+VVGVS GFEK++ +VG GYRA V GK+L L
Sbjct: 89 ESGFLRVKKTVETRRANQMHGLFRTLTDNMVVGVSKGFEKKLILVGVGYRATVDGKELVL 148
Query: 393 NVGYSKPRVLAIPEGLKVVVEKNTTLVISGADKVKVGDFCATIRRQRPPEPYK 551
N+G+S P + IP+ LKV VE+NT + +SG DK ++G F AT+R+ RPPEPYK
Sbjct: 149 NLGFSHPVKMQIPDSLKVKVEENTRITVSGYDKSEIGQFAATVRKWRPPEPYK 201
>sp|O24703|RL6_SYNP6 50S ribosomal protein L6 gi|2446904|dbj|BAA22463.1| 50S ribosomal
protein L6 [Synechococcus sp.]
Length = 179
Score = 159 bits (402), Expect = 2e-38
Identities = 80/157 (50%), Positives = 107/157 (67%)
Frame = +3
Query: 81 SRIGRAPITVPKGVTVTLEGQLVRVKGPNGTLEQTLSPLVKIEQADGKLKLFKLADDRVA 260
SRIG+ PI +P V+V ++G+LV VKGP G L + L V + Q DG + + + + R+A
Sbjct: 2 SRIGKRPIPIPAKVSVAIDGRLVSVKGPKGELSRELPSGVVVTQEDGNIIVSRADESRLA 61
Query: 261 MSQHGLNRSLVNNLVVGVSTGFEKRMEMVGTGYRAAVAGKDLTLNVGYSKPRVLAIPEGL 440
+HGL+R+LV NLV GV +GF+KR+E++G GYRA V G L LNVGYS P + PEG+
Sbjct: 62 RQRHGLSRTLVANLVEGVDSGFQKRLEIIGVGYRAQVQGTTLILNVGYSNPVQIEPPEGI 121
Query: 441 KVVVEKNTTLVISGADKVKVGDFCATIRRQRPPEPYK 551
+ VVE NT +V+SG K VG+ A IR RPPEPYK
Sbjct: 122 QFVVENNTNVVVSGISKEVVGNTAARIRAVRPPEPYK 158
>ref|NP_765363.1| 50S ribosomal protein L6 [Staphylococcus epidermidis ATCC 12228]
gi|27316274|gb|AAO05449.1|AE016750_54 50S ribosomal
protein L6 [Staphylococcus epidermidis ATCC 12228]
Length = 178
Score = 155 bits (391), Expect = 4e-37
Identities = 75/157 (47%), Positives = 105/157 (66%)
Frame = +3
Query: 81 SRIGRAPITVPKGVTVTLEGQLVRVKGPNGTLEQTLSPLVKIEQADGKLKLFKLADDRVA 260
SR+G+ I +P VTVT +G V VKGP G LE+TL+ + +Q + +++ + +D +
Sbjct: 2 SRVGKKIIDIPSDVTVTFDGSHVTVKGPKGELERTLNERMTFKQEENTVEVVRPSDSKED 61
Query: 261 MSQHGLNRSLVNNLVVGVSTGFEKRMEMVGTGYRAAVAGKDLTLNVGYSKPRVLAIPEGL 440
+ HG R+L+NN+V+GVS G+EK +E+VG GYRA + GKDL LNVGYS P + EG+
Sbjct: 62 RTDHGTTRALLNNMVLGVSQGYEKTLELVGVGYRAQMQGKDLVLNVGYSHPVEIKAEEGI 121
Query: 441 KVVVEKNTTLVISGADKVKVGDFCATIRRQRPPEPYK 551
VEKNTT+ +SG K +VG + IR RPPEPYK
Sbjct: 122 TFAVEKNTTVKVSGVSKEQVGAIASNIRSVRPPEPYK 158
>ref|NP_599777.1| ribosomal protein L6 [Corynebacterium glutamicum ATCC 13032]
gi|21323303|dbj|BAB97931.1| Ribosomal protein L6
[Corynebacterium glutamicum ATCC 13032]
Length = 178
Score = 155 bits (391), Expect = 4e-37
Identities = 78/157 (49%), Positives = 102/157 (64%)
Frame = +3
Query: 81 SRIGRAPITVPKGVTVTLEGQLVRVKGPNGTLEQTLSPLVKIEQADGKLKLFKLADDRVA 260
SRIG+ PIT+P GV ++GQLV VKGP GTL + + + DGK+ + + D R
Sbjct: 2 SRIGKEPITIPSGVETKIDGQLVEVKGPKGTLNVNVPEPISVAVEDGKIVVTRPDDHRTN 61
Query: 261 MSQHGLNRSLVNNLVVGVSTGFEKRMEMVGTGYRAAVAGKDLTLNVGYSKPRVLAIPEGL 440
S HGL+RSLVNNLVVGV+ G+ +ME+ G GYR A+ GKDL ++GYS P ++ EG+
Sbjct: 62 RSLHGLSRSLVNNLVVGVTEGYTIKMEIFGVGYRVALKGKDLEFSLGYSHPVLIEASEGI 121
Query: 441 KVVVEKNTTLVISGADKVKVGDFCATIRRQRPPEPYK 551
V+ NT L +SG DK KVG A IRR R +PYK
Sbjct: 122 TFAVDGNTKLSVSGIDKQKVGQVAAVIRRLRKDDPYK 158
