Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KCC000619A_C01 KCC000619A_c01
(545 letters)
Database: nr
1,537,769 sequences; 498,525,298 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680894.1| 30S ribosomal protein S13 [Thermosynechococcus ... 137 7e-32
ref|ZP_00061922.1| COG0099: Ribosomal protein S13 [Clostridium t... 137 1e-31
ref|NP_568299.1| 30S ribosomal protein S13, chloroplast precurso... 136 2e-31
ref|NP_691064.1| 30S ribosomal protein S13 [Oceanobacillus iheye... 135 3e-31
ref|NP_926520.1| 30S ribosomal protein S13 [Gloeobacter violaceu... 134 8e-31
>ref|NP_680894.1| 30S ribosomal protein S13 [Thermosynechococcus elongatus BP-1]
gi|32363319|sp|Q8DML1|RS13_SYNEL 30S ribosomal protein
S13 gi|22293824|dbj|BAC07656.1| 30S ribosomal protein
S13 [Thermosynechococcus elongatus BP-1]
Length = 126
Score = 137 bits (346), Expect = 7e-32
Identities = 67/123 (54%), Positives = 90/123 (72%), Gaps = 1/123 (0%)
Frame = +2
Query: 176 RVNNVEIPNSKRIEVSLQYIFGIGETTAQTILRDTGVE-NKKTYELNEEEINKLRSEVEK 352
R+ V++P KRIE++L YI+GIG T ++ IL TGV + +T +L + +I LR+ +++
Sbjct: 3 RIAGVDLPRDKRIEIALTYIYGIGLTRSKEILAKTGVNPDTRTRDLTDADIAALRAAIDE 62
Query: 353 YTTEADLRRVVAQNIKRLKDIGCYRGRRHIMGLPVRGQRTKTNARTRKGKAKTVCNKTKA 532
Y E DLRR+ A NIKRL DIGCYRGRRH +GLPVRGQRT+TNARTR+G +TV K K
Sbjct: 63 YQVEGDLRRLEAMNIKRLMDIGCYRGRRHRLGLPVRGQRTRTNARTRRGSRRTVAGKKKP 122
Query: 533 TSK 541
+K
Sbjct: 123 AAK 125
>ref|ZP_00061922.1| COG0099: Ribosomal protein S13 [Clostridium thermocellum ATCC
27405]
Length = 123
Score = 137 bits (344), Expect = 1e-31
Identities = 69/115 (60%), Positives = 85/115 (73%), Gaps = 2/115 (1%)
Frame = +2
Query: 176 RVNNVEIPNSKRIEVSLQYIFGIGETTAQTILRDTGVE-NKKTYELNEEEINKLRSEVEK 352
R+ V++P KR+E+ L YIFGIG T + ILR TG+ + + +L +EEI+KLR ++K
Sbjct: 3 RIAGVDLPREKRVEIGLTYIFGIGRTLSNEILRKTGINPDTRVKDLTDEEISKLREVIDK 62
Query: 353 -YTTEADLRRVVAQNIKRLKDIGCYRGRRHIMGLPVRGQRTKTNARTRKGKAKTV 514
Y E DLRR +A NIKRL +IGCYRGRRH GLPVRGQRTKTNARTRKG KTV
Sbjct: 63 EYKVEGDLRREIALNIKRLMEIGCYRGRRHRAGLPVRGQRTKTNARTRKGPKKTV 117
>ref|NP_568299.1| 30S ribosomal protein S13, chloroplast precursor (CS13)
[Arabidopsis thaliana] gi|1173194|sp|P42732|RR13_ARATH
30S ribosomal protein S13, chloroplast precursor (CS13)
gi|2119093|pir||S59594 ribosomal protein S13 precursor,
chloroplast - Arabidopsis thaliana
gi|16767|emb|CAA79013.1| chloroplast 30S ribosomal
protein S13 [Arabidopsis thaliana]
gi|662869|emb|CAA88028.1| chloroplast ribosomal protein
S13 [Arabidopsis thaliana] gi|1107483|emb|CAA63021.1|
30S ribosomal protein S13 [Arabidopsis thaliana]
gi|1515107|emb|CAA60413.1| plastid ribosomal protein S13
[Arabidopsis thaliana] gi|14517397|gb|AAK62589.1|
AT5g14320/F18O22_110 [Arabidopsis thaliana]
gi|15450549|gb|AAK96452.1| AT5g14320/F18O22_110
[Arabidopsis thaliana]
Length = 169
Score = 136 bits (343), Expect = 2e-31
Identities = 75/131 (57%), Positives = 85/131 (64%)
Frame = +2
Query: 143 PRRAPLHIMNLRVNNVEIPNSKRIEVSLQYIFGIGETTAQTILRDTGVENKKTYELNEEE 322
P + L I RV VEIP +KRIE SLQYI GIG T A+ IL D +ENK T ++ EEE
Sbjct: 38 PNKQSLSIRCARVGGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEE 97
Query: 323 INKLRSEVEKYTTEADLRRVVAQNIKRLKDIGCYRGRRHIMGLPVRGQRTKTNARTRKGK 502
+ LR EV KY E DLRR A IKRLK+I CYRG RHI GLP RGQRTK N RT KGK
Sbjct: 98 LIILRDEVSKYMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGK 157
Query: 503 AKTVCNKTKAT 535
+ K K +
Sbjct: 158 KIAIAGKKKVS 168
>ref|NP_691064.1| 30S ribosomal protein S13 [Oceanobacillus iheyensis HTE831]
gi|32363325|sp|Q8ETW0|RS13_OCEIH 30S ribosomal protein
S13 gi|22775821|dbj|BAC12099.1| 30S ribosomal protein
S13 [Oceanobacillus iheyensis HTE831]
Length = 121
Score = 135 bits (341), Expect = 3e-31
Identities = 65/119 (54%), Positives = 89/119 (74%), Gaps = 1/119 (0%)
Frame = +2
Query: 176 RVNNVEIPNSKRIEVSLQYIFGIGETTAQTILRDTGV-ENKKTYELNEEEINKLRSEVEK 352
R+ ++IP KR+ +SL YI+G+G+TTAQ IL++ GV E+ + +L E+E+ ++R V++
Sbjct: 3 RIAGIDIPRDKRVVISLTYIYGVGKTTAQQILKEAGVSEDTRVRDLTEDELGRIRQAVDQ 62
Query: 353 YTTEADLRRVVAQNIKRLKDIGCYRGRRHIMGLPVRGQRTKTNARTRKGKAKTVCNKTK 529
Y TE DLRR V+ NIKRL +IG YRG RH GLPVRGQ+TK N+RTRKG KT+ NK K
Sbjct: 63 YNTEGDLRREVSLNIKRLIEIGSYRGIRHRRGLPVRGQKTKNNSRTRKGPRKTMANKKK 121
>ref|NP_926520.1| 30S ribosomal protein S13 [Gloeobacter violaceus]
gi|35214146|dbj|BAC91515.1| 30S ribosomal protein S13
[Gloeobacter violaceus]
Length = 127
Score = 134 bits (337), Expect = 8e-31
Identities = 70/124 (56%), Positives = 87/124 (69%), Gaps = 2/124 (1%)
Frame = +2
Query: 176 RVNNVEIPNSKRIEVSLQYIFGIGETTAQTILRDTGVE-NKKTYELNEEEINKLRSEVE- 349
R+ V+IP KR+E++L YIFGIG + A IL TG+ N + EL + +++ LR E+E
Sbjct: 3 RIAGVDIPREKRVEIALTYIFGIGPSRATQILLSTGINPNLRVRELTDVQVSLLREEIEQ 62
Query: 350 KYTTEADLRRVVAQNIKRLKDIGCYRGRRHIMGLPVRGQRTKTNARTRKGKAKTVCNKTK 529
KY E DLRR NIKRL DIGC RGRRH +GLPVRGQRT+TNARTR+G KTV K K
Sbjct: 63 KYQVEGDLRRFENINIKRLMDIGCLRGRRHRLGLPVRGQRTRTNARTRRGGRKTVAGKKK 122
Query: 530 ATSK 541
A +K
Sbjct: 123 AAAK 126
