KCC000616A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KCC000616A_C01 KCC000616A_c01
GCACACGCACGCTCCATAATTGAAGCACACACCACCTGGTGCCTCTGGCTTTCGGCCGAA
CCCCACAAAATGAAGACAAGTTTCTTTGTCGTCGCGGCTGTTGCGTTGTATCTGGGTCAG
CTCGCGCTTGCGGCTCAGCGCAATCCTCGCACCGATGAGGACATCCTTCCTGGCTGGATG
GGCACTGACTTCAAGCCTGATGTGGTCCAGCCCGACTTGATCAGCCACCGCCTTGGCAAG
ATGAAGGTTCTTGATGCTGATGCCCGCATTTTTCTGATTGAGCACTTCCTTACCGACGAG
GAGGCCGACCACATCGTCCAAGTCTCTGAGCGCCGTCTGGAGCGCTCGGGCGTCGTCGCC
ACCAACGGCGGCTCTGAAGAGTCCCAGATCCGCACCTCGTTCGGCGTCTTCCTGGAGCGC
GGCGAGGACCCCGTTGTCAAGGGTGTAGAGGAGCGCATCTCCGCCCTGACCCTCATGCCC
GTCGGCAACGGCGAGGGCCTGCAAGTGCTGCGCTACCAGAAGGAGCAGAAGTACGACGCC
CACTGGGACTACTTCTTCCACAAGGACGGCATTGCCAACGGCGGCAACCGCTACGCCACC
GTACTCATGTACCTGGTGGACACCGAGGAGGGCGGCGAGACCGTGTTCCCCAACATCGCA
GCCCCCGGTGGCGAGAACGTGGGCTTCTCCGAGTGCGCGCGCTACCACCTGGCCGCCAAG
CCCAAGAAGGGCACCGCCATCCTATTCCACAGCATCAAGCCCACCGGCGAGCTGGAGCGC
AAGTCGCTGCACACCGCCTGCCCCGTGATCAAGGGTATCAAGTGGTCTGCCGCCAAGTGG
ATCCACGTCGGCCACTACGCCATGGGCAACGAGCAGGCTGAGATGATTGAGCAGCACCCC
CAGCCCAAGGTCAAGCCCCAGAACCTGCCCCCCGGCTGCGAGGACAGCGACGAGATGTGC
CCTGACTGGGCTGAGGCGGGCGAGTGCGAGCGCAACGCTAGCTTCATGATCGGCACCCGC
GCCCGCCCTGGCAAGTGCGTGGCCAGCTGCAAGCGCTGCGACGTAGTCGTGGACACTGGC
GCCGAGCGCACGCAGTCGGAGTGGAAGAAGTCGCAGACCGGCAGCCGCCGCAGCCTGGGC
GCCTAAGCAGCTAAAGGAGCTAGAAGCGGCCTGAAGCGACAGCGTCTGGCGGCTGGCTTA
GCCTATGGTAGAAGCCGCGCAGCAGCGTACATGGTATGTGCGATGTGCGTGGGCGTGTGA
CTAATCTTGACGTTGTGTGCGGCAATGGTTCTTGCGTTGTTGACGCGGGTTTGAACGCAA
TGACTGTCACGGATCATGACCCAATCCTAGAAATTGTTGATTAAATGATTCTGACCAAGG
CTGCGGGCAGGCGCCTGCGTGGGCGCGGAAGCGGTCGGGGC


Nr search


BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KCC000616A_C01 KCC000616A_c01
         (1421 letters)

Database: nr 
           1,537,769 sequences; 498,525,298 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AAO72377.1| putative oxidoreductase [Oryza sativa (japonica c...   239  7e-62
dbj|BAC83179.1| prolyl 4-hydroxylase alpha-1 subunit precursor-l...   239  1e-61
ref|NP_566279.1| oxidoreductase, 2OG-Fe(II) oxygenase family [Ar...   233  5e-60
gb|AAM67123.1| prolyl 4-hydroxylase alpha subunit-like protein [...   233  5e-60
gb|AAM13038.1| unknown protein [Arabidopsis thaliana] gi|2213652...   233  5e-60

>gb|AAO72377.1| putative oxidoreductase [Oryza sativa (japonica cultivar-group)]
          Length = 310

 Score =  239 bits (611), Expect = 7e-62
 Identities = 127/272 (46%), Positives = 170/272 (61%), Gaps = 5/272 (1%)
 Frame = +1

Query: 265  RIFLIEHFLTDEEADHIVQVSERRLERSGVVATNGG-SEESQIRTSFGVFLERGEDPVVK 441
            RIF  + FL+D+E DH+V++ + +L+RS V     G S  S++RTS G+FL++ +DPVV 
Sbjct: 56   RIFFYKGFLSDDECDHLVKLGKEKLKRSMVADNESGKSVMSEVRTSSGMFLDKQQDPVVS 115

Query: 442  GVEERISALTLMPVGNGEGLQVLRYQKEQKYDAHWDYFFHKDGIANGGNRYATVLMYLVD 621
            G+EERI+A TL+P  N E +Q+LRY+  QKYD H+DYF  K     GG+RYATVL YL  
Sbjct: 116  GIEERIAAWTLLPQENAENIQILRYENGQKYDPHFDYFQDKVNQLQGGHRYATVLTYLST 175

Query: 622  TEEGGETVFPNIAAPGGENV----GFSECARYHLAAKPKKGTAILFHSIKPTGELERKSL 789
             E+GGETVFPN  A G E+      FS+CA+  LA K  KG ++LF +++P G  +  SL
Sbjct: 176  VEKGGETVFPN--AEGWESQPKDDSFSDCAKKGLAVKAVKGDSVLFFNLQPDGTPDPLSL 233

Query: 790  HTACPVIKGIKWSAAKWIHVGHYAMGNEQAEMIEQHPQPKVKPQNLPPGCEDSDEMCPDW 969
            H +CPVI+G KWSA KWIHV  Y    + A  ++Q  +           C D  E C  W
Sbjct: 234  HGSCPVIEGEKWSAPKWIHVRSY----DNASSMKQSEE-----------CSDLSENCAAW 278

Query: 970  AEAGECERNASFMIGTRARPGKCVASCKRCDV 1065
            A +GEC  NA +MIGT   PG+C  SC  C +
Sbjct: 279  AASGECNNNAVYMIGTEDAPGQCQKSCNACSL 310

>dbj|BAC83179.1| prolyl 4-hydroxylase alpha-1 subunit precursor-like protein [Oryza
            sativa (japonica cultivar-group)]
          Length = 313

 Score =  239 bits (609), Expect = 1e-61
 Identities = 128/271 (47%), Positives = 168/271 (61%), Gaps = 5/271 (1%)
 Frame = +1

Query: 265  RIFLIEHFLTDEEADHIVQVSERRLERSGVVATNGG-SEESQIRTSFGVFLERGEDPVVK 441
            R+F+ + FL+D+E DH+V++ +R+++RS V     G S  S++RTS G+FL++ +DPVV 
Sbjct: 59   RVFVYKGFLSDDECDHLVKLGKRKMQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVS 118

Query: 442  GVEERISALTLMPVGNGEGLQVLRYQKEQKYDAHWDYFFHKDGIANGGNRYATVLMYLVD 621
             +E+RI+A T +P  N E +Q+LRY+  QKY+ H+DYF  K   A GG+RYATVLMYL  
Sbjct: 119  RIEKRIAAWTFLPEENAENIQILRYEHGQKYEPHFDYFHDKVNQALGGHRYATVLMYLST 178

Query: 622  TEEGGETVFPNIAAPGGENV----GFSECARYHLAAKPKKGTAILFHSIKPTGELERKSL 789
             E+GGETVFPN  A G EN      FSECA+  LA KP KG  +LF S+   G  +  SL
Sbjct: 179  VEKGGETVFPN--AEGWENQPKDDTFSECAQKGLAVKPVKGDTVLFFSLHIDGVPDPLSL 236

Query: 790  HTACPVIKGIKWSAAKWIHVGHYAMGNEQAEMIEQHPQPKVKPQNLPPGCEDSDEMCPDW 969
            H +CPVI+G KWSA KWI +  Y          E  P  KV       GC D+   C  W
Sbjct: 237  HGSCPVIEGEKWSAPKWIRIRSY----------EHPPVSKV-----TEGCSDNSARCAKW 281

Query: 970  AEAGECERNASFMIGTRARPGKCVASCKRCD 1062
            AEAGECE+N  +M+G    PG C  SC  CD
Sbjct: 282  AEAGECEKNPVYMVGAEGLPGNCRKSCGVCD 312

>ref|NP_566279.1| oxidoreductase, 2OG-Fe(II) oxygenase family [Arabidopsis thaliana]
          Length = 299

 Score =  233 bits (595), Expect = 5e-60
 Identities = 122/280 (43%), Positives = 167/280 (59%), Gaps = 6/280 (2%)
 Frame = +1

Query: 238  KMKVLDADARIFLIEHFLTDEEADHIVQVSERRLERSGVVAT-NGGSEESQIRTSFGVFL 414
            K+K + +  R F+ E FLTD E DH++ +++  L+RS V    NG S+ S +RTS G F+
Sbjct: 37   KVKQVSSKPRAFVYEGFLTDLECDHLISLAKENLQRSAVADNDNGESQVSDVRTSSGTFI 96

Query: 415  ERGEDPVVKGVEERISALTLMPVGNGEGLQVLRYQKEQKYDAHWDYFFHKDGIANGGNRY 594
             +G+DP+V G+E+++S  T +P  NGE LQVLRY+  QKYDAH+DYF  K  IA GG+R 
Sbjct: 97   SKGKDPIVSGIEDKLSTWTFLPKENGEDLQVLRYEHGQKYDAHFDYFHDKVNIARGGHRI 156

Query: 595  ATVLMYLVDTEEGGETVFPNIAAPGGENVG-----FSECARYHLAAKPKKGTAILFHSIK 759
            ATVL+YL +  +GGETVFP+       ++       S+CA+  +A KPKKG A+LF +++
Sbjct: 157  ATVLLYLSNVTKGGETVFPDAQEFSRRSLSENKDDLSDCAKKGIAVKPKKGNALLFFNLQ 216

Query: 760  PTGELERKSLHTACPVIKGIKWSAAKWIHVGHYAMGNEQAEMIEQHPQPKVKPQNLPPGC 939
                 +  SLH  CPVI+G KWSA KWIHV  +       + I  H             C
Sbjct: 217  QDAIPDPFSLHGGCPVIEGEKWSATKWIHVDSF-------DKILTH----------DGNC 259

Query: 940  EDSDEMCPDWAEAGECERNASFMIGTRARPGKCVASCKRC 1059
             D +E C  WA  GEC +N  +M+GT   PG C  SCK C
Sbjct: 260  TDVNESCERWAVLGECGKNPEYMVGTPEIPGNCRRSCKAC 299

>gb|AAM67123.1| prolyl 4-hydroxylase alpha subunit-like protein [Arabidopsis
            thaliana]
          Length = 297

 Score =  233 bits (595), Expect = 5e-60
 Identities = 122/280 (43%), Positives = 167/280 (59%), Gaps = 6/280 (2%)
 Frame = +1

Query: 238  KMKVLDADARIFLIEHFLTDEEADHIVQVSERRLERSGVVAT-NGGSEESQIRTSFGVFL 414
            K+K + +  R F+ E FLTD E DH++ +++  L+RS V    NG S+ S +RTS G F+
Sbjct: 35   KVKQVSSKPRAFVYEGFLTDLECDHLISLAKENLQRSAVADNDNGESQVSDVRTSSGTFI 94

Query: 415  ERGEDPVVKGVEERISALTLMPVGNGEGLQVLRYQKEQKYDAHWDYFFHKDGIANGGNRY 594
             +G+DP+V G+E+++S  T +P  NGE LQVLRY+  QKYDAH+DYF  K  IA GG+R 
Sbjct: 95   SKGKDPIVSGIEDKLSTWTFLPKENGEDLQVLRYEHGQKYDAHFDYFHDKVNIARGGHRI 154

Query: 595  ATVLMYLVDTEEGGETVFPNIAAPGGENVG-----FSECARYHLAAKPKKGTAILFHSIK 759
            ATVL+YL +  +GGETVFP+       ++       S+CA+  +A KPKKG A+LF +++
Sbjct: 155  ATVLLYLSNVTKGGETVFPDAQEFSRRSLSENKDDLSDCAKKGIAVKPKKGNALLFFNLQ 214

Query: 760  PTGELERKSLHTACPVIKGIKWSAAKWIHVGHYAMGNEQAEMIEQHPQPKVKPQNLPPGC 939
                 +  SLH  CPVI+G KWSA KWIHV  +       + I  H             C
Sbjct: 215  QDAIPDPFSLHGGCPVIEGEKWSATKWIHVDSF-------DKILTH----------DGNC 257

Query: 940  EDSDEMCPDWAEAGECERNASFMIGTRARPGKCVASCKRC 1059
             D +E C  WA  GEC +N  +M+GT   PG C  SCK C
Sbjct: 258  TDVNESCERWAVLGECGKNPEYMVGTPEIPGNCRRSCKAC 297

>gb|AAM13038.1| unknown protein [Arabidopsis thaliana] gi|22136524|gb|AAM91340.1|
            unknown protein [Arabidopsis thaliana]
          Length = 298

 Score =  233 bits (595), Expect = 5e-60
 Identities = 123/280 (43%), Positives = 167/280 (58%), Gaps = 6/280 (2%)
 Frame = +1

Query: 238  KMKVLDADARIFLIEHFLTDEEADHIVQVSERRLERSGVVATNGG-SEESQIRTSFGVFL 414
            K+K + +  R F+ E FLT+ E DH+V +++  L+RS V   + G S+ S++RTS G F+
Sbjct: 36   KVKQVSSKPRAFVYEGFLTELECDHMVSLAKASLKRSAVADNDSGESKFSEVRTSSGTFI 95

Query: 415  ERGEDPVVKGVEERISALTLMPVGNGEGLQVLRYQKEQKYDAHWDYFFHKDGIANGGNRY 594
             +G+DP+V G+E++IS  T +P  NGE +QVLRY+  QKYDAH+DYF  K  I  GG+R 
Sbjct: 96   SKGKDPIVSGIEDKISTWTFLPKENGEDIQVLRYEHGQKYDAHFDYFHDKVNIVRGGHRM 155

Query: 595  ATVLMYLVDTEEGGETVFPNIAAPG----GEN-VGFSECARYHLAAKPKKGTAILFHSIK 759
            AT+LMYL +  +GGETVFP+   P      EN    S+CA+  +A KP+KG A+LF ++ 
Sbjct: 156  ATILMYLSNVTKGGETVFPDAEIPSRRVLSENEEDLSDCAKRGIAVKPRKGDALLFFNLH 215

Query: 760  PTGELERKSLHTACPVIKGIKWSAAKWIHVGHYAMGNEQAEMIEQHPQPKVKPQNLPPGC 939
            P    +  SLH  CPVI+G KWSA KWIHV  +                 V P      C
Sbjct: 216  PDAIPDPLSLHGGCPVIEGEKWSATKWIHVDSF--------------DRIVTPSG---NC 258

Query: 940  EDSDEMCPDWAEAGECERNASFMIGTRARPGKCVASCKRC 1059
             D +E C  WA  GEC +N  +M+GT   PG C  SCK C
Sbjct: 259  TDMNESCERWAVLGECTKNPEYMVGTTELPGYCRRSCKAC 298



EST assemble image


clone accession position
1 MX236g03_r BP091307 1 509
2 CL48d08_r AV395803 102 597
3 HCL002d04_r AV639646 110 590
4 HCL017g06_r AV640522 112 642
5 HC002c04_r AV631965 113 625
6 MXL079h01_r BP097697 116 508
7 HCL090c02_r AV644539 126 465
8 HC053b12_r AV635951 229 656
9 HCL067d12_r AV643316 329 752
10 HC011a09_r AV632663 345 819
11 LC071g08_r AV624015 458 957
12 HCL017h10_r AV640535 612 1119
13 CM031a07_r AV388300 691 1111
14 CM072e05_r AV391486 839 1327
15 LC071d08_r AV623987 1033 1528




Chlamydomonas reinhardtii
Kazusa DNA Research Institute